mRNA_H-elongata_contig49579.12154.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49579.12154.1
Unique NamemRNA_H-elongata_contig49579.12154.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: D7FKR7_ECTSI (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR7_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.550e-92
Identity = 150/217 (69.12%), Postives = 172/217 (79.26%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPLEHRDEIPISQVQI 657
            +VERIIS+AH  GKR+RVVGNALSPNG+GLSE+ MLSLG CDR+L VD++K TVT EAG                     SI+EQQLGGFLQVGAHGTGA IPPVDEQVV MKLVTP+LGT+ELSN+ +P+LFR+ KVGLGA GVVTEVTIKCV RH+L E+T+VMTRAEVKANH ALLRSNKHIRYMWIPYTDAVVVVR NP++   +     VQ+
Sbjct:   86 EVERIISEAHNSGKRIRVVGNALSPNGLGLSEDAMLSLGQCDRVLHVDKKKGTVTVEAGXXXXXXXXXXXXXXXXXXXXXSISEQQLGGFLQVGAHGTGATIPPVDEQVVGMKLVTPKLGTLELSNEKNPSLFRMAKVGLGAFGVVTEVTIKCVERHQLVESTAVMTRAEVKANHDALLRSNKHIRYMWIPYTDAVVVVRCNPVDLHGKSTTRPVQM 302          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A835ZG22_9STRA (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG22_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.910e-91
Identity = 145/204 (71.08%), Postives = 167/204 (81.86%), Query Frame = 1
Query:   10 VERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPLE 621
            VE+II+ AH+ G +VRVVGNALSPN IGLS +TML+L  CD++L VD  +KTV  +AGARVQQVVD L P+ LTLQNYASI+EQQ+GGFLQVGAHGTG  IPPVDEQ+++M+LVTP LG IELS    P LFRL KVGLGA+GVVTEVTI+CV RH L E T V+TRAEVKA H  LL+ N+HIRYMWIPYTDAVVVV  NP E
Sbjct:   54 VEQIIAGAHKAGTKVRVVGNALSPNAIGLSTDTMLTLALCDKVLSVDPMRKTVRVQAGARVQQVVDALTPYNLTLQNYASISEQQIGGFLQVGAHGTGVTIPPVDEQIISMRLVTPGLGAIELSEDLDPDLFRLAKVGLGALGVVTEVTIQCVPRHLLTEKTWVLTRAEVKAQHRRLLKENRHIRYMWIPYTDAVVVVACNPAE 257          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A061R9J8_9CHLO (L-galactono-1,4-lactone dehydorogenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R9J8_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 4.740e-81
Identity = 129/202 (63.86%), Postives = 161/202 (79.70%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSN 612
            ++ERI+++AH EG+++R VG+ LSPNGI  SE+ M+S+G  D++L VD+    VT +AGARVQ VV+ L PHGLTLQN+ASI EQQ+GGF QVGAHGTGAAIPPVDEQVV+MKLVTP  GT+ELS   +P LFRL + GLGA+GVV EVT++CV  H+L ETT V + AEVK  H + LR N+H+RYMWIPYTD VVVV +N
Sbjct:  115 ELERIVAEAHNEGRKIRAVGSGLSPNGIAFSEQCMISMGLLDKVLSVDEGAGRVTVQAGARVQDVVEALRPHGLTLQNFASIREQQIGGFTQVGAHGTGAAIPPVDEQVVSMKLVTPGQGTVELSESVNPELFRLARCGLGALGVVAEVTLQCVPAHRLVETTWVSSMAEVKKKHASWLRENQHLRYMWIPYTDTVVVVANN 316          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A250XCV1_9CHLO (FAD-binding PCMH-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCV1_9CHLO)

HSP 1 Score: 263 bits (673), Expect = 1.300e-80
Identity = 129/207 (62.32%), Postives = 162/207 (78.26%), Query Frame = 1
Query:    1 ELQVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPLE 621
            E +VE  +  AH  G+++RV+G+ +SPNG+GLSEE ML +   D+I+ V+ EK  VT +AG RVQQV D L P+GLTLQNYASI +QQ+GGF+QVGAHGTGA +PPVD+QVVAM+LVTP +G I LS +  P LF L KVGLGA+GV+++VT++CV RH+L ETTS  T AEVK NH   L+ N H+RYMWIPYTD VVVVRSNPL+
Sbjct:  142 EAEVEVFVRAAHDAGQKLRVMGSGISPNGLGLSEEGMLGMALMDKIVDVNTEKMQVTVQAGCRVQQVADALKPYGLTLQNYASIRDQQIGGFVQVGAHGTGATLPPVDDQVVAMRLVTPAMGVITLSKQDEPELFSLAKVGLGALGVLSQVTLRCVPRHQLLETTSTATVAEVKKNHKRWLQENLHLRYMWIPYTDTVVVVRSNPLQ 348          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A2P6TFJ6_CHLSO (L-galactono-1,4-lactone mitochondrial-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFJ6_CHLSO)

HSP 1 Score: 257 bits (656), Expect = 2.690e-78
Identity = 130/213 (61.03%), Postives = 160/213 (75.12%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSN--PLEHRDEIP 639
            ++E  +  AH  G+++R VG+ LSPNG+G SEE M+SL   DR+L+VD+EK+ VT +AGARVQ V DEL  HGL+LQNYASI EQ +GGF QV AHGTGA+IPPVDEQVVA+KLVTP LGTIELS    P LF L KVGLG +GVV EVT++CV  H+L E TSV + AEV+A H   L+ NKH+RYMW+P+TD+VVVV  N  P +    IP
Sbjct:  137 ELEATVRAAHDAGRKLRCVGSGLSPNGLGFSEEGMVSLALMDRVLKVDEEKQQVTVQAGARVQAVADELRKHGLSLQNYASIREQTIGGFTQVSAHGTGASIPPVDEQVVALKLVTPALGTIELSKSQDPQLFDLAKVGLGCLGVVAEVTLQCVPAHRLLEQTSVASVAEVQAQHAQRLKDNKHLRYMWLPHTDSVVVVTCNKVPQDQEPAIP 349          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A2K3N5G9_TRIPR (L-galactono-1,4-lactone dehydrogenase (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N5G9_TRIPR)

HSP 1 Score: 248 bits (632), Expect = 9.780e-78
Identity = 122/204 (59.80%), Postives = 156/204 (76.47%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPL 618
            ++ER++S+AH+   R+R VG+ LSPNGIGLS   M++L   D IL VD+EKK V  +AG RVQQ+VD +  HGLTLQN+ASI EQQ+GG +QVGAHGTGA +PP+DEQV+AMKLVTP  GTIE+S +  P LF L + GLG +GVV EVT++CV R +L E T V T  E+K NH  LL  NKH++Y++IPYTD+VVVVR NP+
Sbjct:   90 ELERVVSEAHKGKTRIRPVGSGLSPNGIGLSRIGMVNLSLMDSILEVDKEKKIVRVQAGIRVQQLVDGIKEHGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDEQVIAMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQCVDRQELVEHTVVSTMDEIKKNHKKLLSENKHVKYLYIPYTDSVVVVRCNPV 293          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A7S0NSM8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSM8_9EUKA)

HSP 1 Score: 252 bits (643), Expect = 1.430e-77
Identity = 126/203 (62.07%), Postives = 159/203 (78.33%), Query Frame = 1
Query:   10 VERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPL 618
            VE ++S AH  G ++RVVG+ALSPNGIGLSE  ML++  CDR+L +D EK   T EAGARV++VV+ L P+GLTLQNYASI EQQ+GGFLQVGAHGTGA +PPVDEQ++ M+L TP LG++ELS +H+P LFRL +VGLGA+G+VTEVTI+CV  H+L + T   TR  V   H   L +++H+RYMWIPYTD VVVV  +PL
Sbjct:   24 VESLLSAAHAAGSKLRVVGSALSPNGIGLSEGGMLNMVLCDRVLSIDAEKMQATVEAGARVKEVVEALRPYGLTLQNYASIAEQQIGGFLQVGAHGTGARVPPVDEQIIRMRLQTPALGSLELSEEHNPRLFRLARVGLGALGIVTEVTIQCVPAHRLLQHTYTDTREGVIKRHQENL-AHQHMRYMWIPYTDTVVVVTCDPL 225          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: K3ZIZ6_SETIT (FAD-binding PCMH-type domain-containing protein n=2 Tax=Paniceae TaxID=147428 RepID=K3ZIZ6_SETIT)

HSP 1 Score: 247 bits (630), Expect = 4.270e-77
Identity = 123/202 (60.89%), Postives = 153/202 (75.74%), Query Frame = 1
Query:   10 VERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNP 615
            +E  ++ AH+E +++R +G+ LSPNGIGLS   M+SL   D++L VD +KKTVT +AG RV ++VD L  HGLTLQN+ASI EQQ+GGF+QVGAHGTGA +PPVDEQV++MKLVTP  GTIELS +  P LF L + GLG +GVV EVT++CV RH+L E T V    EVK NH   L  NKHI+Y+WIPYTD VVVVR NP
Sbjct:  115 LEDALATAHKERRKLRPLGSGLSPNGIGLSRAGMVSLALMDKVLDVDVKKKTVTVQAGIRVAELVDALREHGLTLQNFASIREQQVGGFIQVGAHGTGARLPPVDEQVISMKLVTPAKGTIELSREKDPELFYLARCGLGGLGVVAEVTLQCVERHQLVEHTFVSNADEVKKNHKKWLSENKHIKYLWIPYTDTVVVVRCNP 316          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A7S0R7R7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R7R7_9CHLO)

HSP 1 Score: 254 bits (648), Expect = 5.160e-77
Identity = 121/204 (59.31%), Postives = 158/204 (77.45%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPL 618
            ++E +++KAH++G ++R +G+ALSPNG+G S+E +++L   D+++ VD E+  VT +AGARV QV D L PHGL LQN+ASI EQQLGGF QVGAHGTGA +PPVDE+VV +K+VTP  GT++LS + +P LF L KV +G +GVV EVTIKCV  HKL E T V++R+ +K NH  LLR NKHIRYMWIPYT  V+VV  NPL
Sbjct:  112 ELETLVAKAHKKGTKLRPIGSALSPNGVGFSDEELVNLAMLDQVVNVDAERGLVTVQAGARVSQVTDALRPHGLVLQNFASIAEQQLGGFTQVGAHGTGATLPPVDERVVGLKIVTPGRGTLQLSAESNPELFNLAKVAMGCLGVVAEVTIKCVPAHKLVERTYVVSRSFIKENHERLLRENKHIRYMWIPYTQDVIVVACNPL 315          
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Match: A0A7R9Y180_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y180_9VIRI)

HSP 1 Score: 248 bits (634), Expect = 9.070e-77
Identity = 123/216 (56.94%), Postives = 166/216 (76.85%), Query Frame = 1
Query:    7 QVERIISKAHREGKRVRVVGNALSPNGIGLSEETMLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINEQQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPA-LFRLVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKHIRYMWIPYTDAVVVVRSNPLEHRDEIPISQV 651
            ++E I++ AH  G+RVRVVG+ALSPNG GL  + M+SL  CD++L VD+++K VT EAG RV+++V+ L P+GLTL+NYASI EQQ+GGF+ VGAHGTGAA+PPVDEQVV++KLVTP  GT+ELS + + A LFRL +V +G +G ++EVT++ V  H+L E T V TR  V+  H A L+  KH+RYMW+PYTD VVVV SNP++   E+P  +V
Sbjct:   11 ELEAIVAGAHAAGERVRVVGSALSPNGTGLCADGMVSLALCDKVLAVDEKRKRVTVEAGCRVRELVEALRPYGLTLENYASIAEQQVGGFVSVGAHGTGAAVPPVDEQVVSLKLVTPARGTLELSAEGADAGLFRLARVAMGTLGAISEVTLQLVDAHRLHEVTYVATRERVRREHEATLKRFKHVRYMWLPYTDDVVVVGSNPVKKGAELPDCKV 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49579.12154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR7_ECTSI1.550e-9269.12L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ecto... [more]
A0A835ZG22_9STRA1.910e-9171.08L-galactono-1,4-lactone dehydrogenase n=1 Tax=Trib... [more]
A0A061R9J8_9CHLO4.740e-8163.86L-galactono-1,4-lactone dehydorogenase n=2 Tax=Tet... [more]
A0A250XCV1_9CHLO1.300e-8062.32FAD-binding PCMH-type domain-containing protein n=... [more]
A0A2P6TFJ6_CHLSO2.690e-7861.03L-galactono-1,4-lactone mitochondrial-like n=1 Tax... [more]
A0A2K3N5G9_TRIPR9.780e-7859.80L-galactono-1,4-lactone dehydrogenase (Fragment) n... [more]
A0A7S0NSM8_9EUKA1.430e-7762.07Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
K3ZIZ6_SETIT4.270e-7760.89FAD-binding PCMH-type domain-containing protein n=... [more]
A0A7S0R7R7_9CHLO5.160e-7759.31Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7R9Y180_9VIRI9.070e-7756.94Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49579contigH-elongata_contig49579:1815..3747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue1.2e-60
Seed eggNOG ortholog2880.D7FKR7
Preferred nameGLDH
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009536,GO:0016491,GO:0016627,GO:0016632,GO:0016633,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0080049
EggNOG free text desc.D-arabinono-1,4-lactone oxidase activity
EggNOG OGsCOG0277@1,KOG4730@2759
EC1.3.2.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size813
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.1920855-UTR-H-elongata_contig49579:1814..19221622930816.1920855-UTR-H-elongata_contig49579:1814..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49579 1815..1922 +
1691679582.4177139-UTR-H-elongata_contig49579:1814..19221691679582.4177139-UTR-H-elongata_contig49579:1814..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49579 1815..1922 +
1622930816.2857523-UTR-H-elongata_contig49579:3609..37471622930816.2857523-UTR-H-elongata_contig49579:3609..3747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49579 3610..3747 +
1691679582.4894795-UTR-H-elongata_contig49579:3609..37471691679582.4894795-UTR-H-elongata_contig49579:3609..3747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49579 3610..3747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.2109177-CDS-H-elongata_contig49579:1922..19911622930816.2109177-CDS-H-elongata_contig49579:1922..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 1923..1991 +
1691679582.4305449-CDS-H-elongata_contig49579:1922..19911691679582.4305449-CDS-H-elongata_contig49579:1922..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 1923..1991 +
1622930816.2224033-CDS-H-elongata_contig49579:2355..24601622930816.2224033-CDS-H-elongata_contig49579:2355..2460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 2356..2460 +
1691679582.4509249-CDS-H-elongata_contig49579:2355..24601691679582.4509249-CDS-H-elongata_contig49579:2355..2460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 2356..2460 +
1622930816.2349904-CDS-H-elongata_contig49579:2701..28361622930816.2349904-CDS-H-elongata_contig49579:2701..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 2702..2836 +
1691679582.4617734-CDS-H-elongata_contig49579:2701..28361691679582.4617734-CDS-H-elongata_contig49579:2701..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 2702..2836 +
1622930816.2496777-CDS-H-elongata_contig49579:3044..31901622930816.2496777-CDS-H-elongata_contig49579:3044..3190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 3045..3190 +
1691679582.470857-CDS-H-elongata_contig49579:3044..31901691679582.470857-CDS-H-elongata_contig49579:3044..3190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 3045..3190 +
1622930816.2680283-CDS-H-elongata_contig49579:3497..36091622930816.2680283-CDS-H-elongata_contig49579:3497..3609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 3498..3609 +
1691679582.480519-CDS-H-elongata_contig49579:3497..36091691679582.480519-CDS-H-elongata_contig49579:3497..3609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49579 3498..3609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49579.12154.1prot_H-elongata_contig49579.12154.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49579 1923..3609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49579.12154.1

>prot_H-elongata_contig49579.12154.1 ID=prot_H-elongata_contig49579.12154.1|Name=mRNA_H-elongata_contig49579.12154.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
MLSLGHCDRILRVDQEKKTVTFEAGARVQQVVDELVPHGLTLQNYASINE
QQLGGFLQVGAHGTGAAIPPVDEQVVAMKLVTPQLGTIELSNKHSPALFR
LVKVGLGAMGVVTEVTIKCVARHKLRETTSVMTRAEVKANHHALLRSNKH
IRYMWIPYTDAVVVVRSNPLEHRDEIPISQVQIIINPF*
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mRNA from alignment at H-elongata_contig49579:1815..3747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49579.12154.1 ID=mRNA_H-elongata_contig49579.12154.1|Name=mRNA_H-elongata_contig49579.12154.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1933bp|location=Sequence derived from alignment at H-elongata_contig49579:1815..3747+ (Himanthalia elongata Himel1 dioecious)
GAACTGCAGGTGGAACGCATCATTAGCAAAGCCCACCGTGAGGGCAAGCG TGTGCGCGTGGTCGGGAACGCCCTCTCCCCGAATGGCATAGGTCTTAGCG AAGAAACAATGTTATCGCTTGGCCACTGTGATCGCATCCTTCGGGTAGAC CAAGAGAAGAAGACTGTGACTTTTGAGGTATGAAATGCCAGTCTTTCGTA TATTGTGCATGTTCGATAAGTACTGTAGAATCTACTGAAGTAGAGTAACT CAGCTATAGAAGGTGAGGGAGGCGGGTCGAGCGTGACAGTAGTCGACCAC GAGCTGTAACATCTAGGACTGCTGACTCCTCGGGAAAAAGGGATGCTGAC GAAGATACTGACGCTCATGTCTAAATTTTAACTGTCTCGCTATTCATAAT TCATAAGAGGAAGAGGAAGAATCGCGGTTATGACGAGGGAGCCAGTTAGC CGCGGGTAATATGGCTCCAACAACTCGATTTGTGTGTTGCTCATTACACC ATTAAACCTGAACTCGATAGTGCCGCAATCTTCTTTTCCAGGCTGGGGCA CGCGTGCAGCAGGTGGTGGATGAGCTGGTACCCCACGGCCTCACGCTTCA AAACTACGCATCCATCAATGAGCAGCAGCTCGGCGGATTTCTGCAGGTAT ACTCAAACGCGGATGGGCGTAGGTGTTAGTACAGTTTTTATTTTTCATTA TATACAATTATATACAATTATGTACAGTGCTTTTAGTCGCGTGAGAAACG ACTGGTGACCAAGCATTTGGTTGTTCTTTTGTTCTTCATCATGCGCAGCG AGACTTATACCGTATACCGTATACCGTATACCGTACGCACCTCAACTCGC TCGACGTATTTTGTCTTTCGGCCTACTAACAACTCAGGTAGGAGCCCACG GTACGGGCGCTGCCATTCCTCCGGTGGATGAGCAGGTGGTGGCGATGAAG CTGGTTACCCCTCAGCTCGGCACCATCGAACTCAGCAATAAGCACAGCCC TGCTTTATTTCGCTTGGTGAAGGTAATAAAAACAAATCAAGTTATTATAT CGACCTTCGATCTCACGATCTCACGAGCGGGCTTGCCACGGTAAATGCTG CTGCTCAAGTATCGTACAGTATCTGCCCGGTCTTAATATTTTGCGTTCGG CAGCGCTGCCGCCTCCTTTGTCAACATATATGTATAGTAATCGTGAATGT TTTTCCTCGCCCCGATTGTAACTGGCACAGGTGGGACTCGGGGCGATGGG GGTGGTTACAGAAGTGACCATCAAGTGCGTAGCGCGGCATAAGCTGCGAG AGACAACTTCCGTTATGACGCGTGCAGAGGTCAAGGCCAACCATCACGCC CTGCTCCGTAGCAACAAGCACATCAGGTAAAGATTAATAGCGACCCGTGA TGAGATCGATCCGCAGACTAAAGCGGCGAATCCAGGTGCCGTATCTCCCT AGGGCATCCATAATTCACCGGAAACATGAACAAGTAACGTGCCATGCACG AGGTCGATTGAGCTCAGCTGTTACACTGCCTGTGTCTGGAAATTAGTTCA ATAATTAAAAAAAAAACATGCGTACTCTAATATTCTTCGCCACGGTCATG GCTGCGTACCGCAGAAACCAAGCATCGCCCCCCCCCCCCCCTGTGCTGGC GAACGAACGCGATGATCCTACTTTCCCATACAGGTATATGTGGATACCGT ACACGGACGCTGTCGTCGTGGTGCGATCTAACCCCCTGGAGCATCGCGAT GAAATTCCCATAAGTCAGGTGCAAATTATAATAAACCCTTTTTGACATTT GTTGGCGACGACATCGCTGCCGAATCTTCATTTTCTTGCTGTTTACGCCT TGACCATATTTCAAAGTTAGCTTCAGCGGGGGGTCTCCTCGCATGCGCTC CTCGGTACCCACTTTGACATCTTCCCTAGTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig49579:1815..3747+

>mRNA_H-elongata_contig49579.12154.1 ID=mRNA_H-elongata_contig49579.12154.1|Name=mRNA_H-elongata_contig49579.12154.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig49579:1815..3747+ (Himanthalia elongata Himel1 dioecious)
ATGTTATCGCTTGGCCACTGTGATCGCATCCTTCGGGTAGACCAAGAGAA
GAAGACTGTGACTTTTGAGATGTTATCGCTTGGCCACTGTGATCGCATCC
TTCGGGTAGACCAAGAGAAGAAGACTGTGACTTTTGAGGCTGGGGCACGC
GTGCAGCAGGTGGTGGATGAGCTGGTACCCCACGGCCTCACGCTTCAAAA
CTACGCATCCATCAATGAGCAGCAGCTCGGCGGATTTCTGCAGGCTGGGG
CACGCGTGCAGCAGGTGGTGGATGAGCTGGTACCCCACGGCCTCACGCTT
CAAAACTACGCATCCATCAATGAGCAGCAGCTCGGCGGATTTCTGCAGGT
AGGAGCCCACGGTACGGGCGCTGCCATTCCTCCGGTGGATGAGCAGGTGG
TGGCGATGAAGCTGGTTACCCCTCAGCTCGGCACCATCGAACTCAGCAAT
AAGCACAGCCCTGCTTTATTTCGCTTGGTGAAGGTAGGAGCCCACGGTAC
GGGCGCTGCCATTCCTCCGGTGGATGAGCAGGTGGTGGCGATGAAGCTGG
TTACCCCTCAGCTCGGCACCATCGAACTCAGCAATAAGCACAGCCCTGCT
TTATTTCGCTTGGTGAAGGTGGGACTCGGGGCGATGGGGGTGGTTACAGA
AGTGACCATCAAGTGCGTAGCGCGGCATAAGCTGCGAGAGACAACTTCCG
TTATGACGCGTGCAGAGGTCAAGGCCAACCATCACGCCCTGCTCCGTAGC
AACAAGCACATCAGGTGGGACTCGGGGCGATGGGGGTGGTTACAGAAGTG
ACCATCAAGTGCGTAGCGCGGCATAAGCTGCGAGAGACAACTTCCGTTAT
GACGCGTGCAGAGGTCAAGGCCAACCATCACGCCCTGCTCCGTAGCAACA
AGCACATCAGGTATATGTGGATACCGTACACGGACGCTGTCGTCGTGGTG
CGATCTAACCCCCTGGAGCATCGCGATGAAATTCCCATAAGTCAGGTGCA
AATTATAATAAACCCTTTTTGAGTATATGTGGATACCGTACACGGACGCT
GTCGTCGTGGTGCGATCTAACCCCCTGGAGCATCGCGATGAAATTCCCAT
AAGTCAGGTGCAAATTATAATAAACCCTTTTTGA
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