mRNA_H-elongata_contig49555.12148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49555.12148.1
Unique NamemRNA_H-elongata_contig49555.12148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: D7FNF9_ECTSI (Similar to follicular lymphoma variant translocation 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.510e-40
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   70 LQMEAYGIGVSVAYPPDTDTPGYARESVGKPETTHLI-EKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQVQKVNV 363
            ++++AYGIGV+VAYPPDTDTPG+ RE+VGKPE T LI E  GG+FSP QVAA +V+GLKAGDFCIT+G EGYLVGL TAGF+PCFSVS ++ QV    V
Sbjct:    1 MEVKAYGIGVAVAYPPDTDTPGFERENVGKPEVTRLIGEDAGGLFSPTQVAATMVKGLKAGDFCITLGGEGYLVGLATAGFAPCFSVSRALCQVLSAGV 99          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: A0A7S2RM03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM03_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.940e-33
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQV 348
            Q+G+YG+T YAASKFA+VG AQ+LQME   +GI VSVAYPPDT TPGY  E++ KPE + LI    G+F P QVA  IV GL+ GDF I  G++G+++   TAG SP  SV + I QV
Sbjct:  185 QLGVYGFTAYAASKFAVVGFAQSLQMEVKPFGIQVSVAYPPDTATPGYQEENLSKPEASRLISNTSGLFQPQQVACHIVNGLEHGDFSIWTGLDGWMLATLTAGMSPATSVVDVIAQV 302          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: A0A2B4SHQ7_STYPI (3-ketodihydrosphingosine reductase n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SHQ7_STYPI)

HSP 1 Score: 117 bits (294), Expect = 1.790e-29
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQV 348
            Q GI+G+T Y+ SKFA+ G A+ L ME   Y I VSVA+PPDTDTPG+  E+  KPE THLI   GG+F+P QVA+ IV G+K   F I+ G +GY+V   TAG +P  S+ E + QV
Sbjct:  175 QFGIFGFTAYSPSKFAVRGFAETLFMEVKPYNIAVSVAFPPDTDTPGFENENKNKPEETHLISSSGGLFTPEQVASNIVIGIKDRRFIISCGFDGYVVSTLTAGLAPISSLMELLTQV 292          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: A0A8J1UR32_OWEFU (Ofus.G18826 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UR32_OWEFU)

HSP 1 Score: 117 bits (293), Expect = 2.250e-29
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQVQKVNV 363
            QIG++GYT YA+SKFAL G+AQ+L ME   Y + VSV YPPDTDTPG A E++ KPE T LI +  G++ P QVA  I++G K   F I++G++G ++    AG SP   +S+++ QV  + +
Sbjct:  177 QIGLFGYTAYASSKFALNGLAQSLHMEMKPYNVMVSVVYPPDTDTPGLAAENISKPEETKLISEAAGVYQPEQVAQTIIEGAKKRKFNISLGIDGLMLTSVNAGMSPVTHLSDAVIQVLSMGI 299          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: UPI00077A271A (3-ketodihydrosphingosine reductase-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A271A)

HSP 1 Score: 117 bits (293), Expect = 2.760e-29
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQVQKVNVRVSVFVAL 387
            QIGI+G+T YA SKFAL G A+AL ME   Y I VSV +PPDTDTPG+  E+  KP+ TH I    G+FSP QVA+ IV G+K   F IT G++G++V   T+G  P  SV E + +V  +     VF AL
Sbjct:  175 QIGIFGFTAYAPSKFALRGFAEALFMEVKPYNIAVSVVFPPDTDTPGFENENKNKPDETHEISSSAGLFSPEQVASNIVSGIKDRKFLITCGLDGFVVKTLTSGVCPPSSVLELLAEVVLLGFLCLVFAAL 305          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: A0A7S2DG25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG25_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.960e-29
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQV 348
            Q+G++G++ Y+ +KFA+VG+AQ L ME   + I V+VAYPPDTDTPG+  E+ GKPE T LI +  G+F P QVAA IV GL+ G F    G++G+L+   TAG  PC S+ E I QV
Sbjct:  222 QLGVFGFSAYSPTKFAIVGLAQVLSMELKPHDIHVTVAYPPDTDTPGFKEENKGKPEETCLISETSGLFQPDQVAADIVSGLQRGAFTAYTGLDGWLLAHLTAGMGPCSSLFEGIAQV 339          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: A0A6S7JR19_PARCT (3-ketodihydrosphingosine reductase (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JR19_PARCT)

HSP 1 Score: 115 bits (288), Expect = 6.470e-29
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQ 345
            Q+GI+GY  Y+ASKFAL G+A+ L ME   YGIGVSVA+PPDT+TPG+  E+  KPE T L+    G+FSP+ VA  I+ G++ G + I+ G++GYL+ + T G SP  S  E + Q
Sbjct:  172 QLGIFGYAGYSASKFALRGLAETLLMEVRPYGIGVSVAFPPDTETPGFKEENKDKPEETRLVSASAGVFSPSTVAKDILDGVQGGKYLISSGMDGYLLNMLTCGASPASSRLELLMQ 288          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: UPI0009E64BE5 (3-ketodihydrosphingosine reductase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E64BE5)

HSP 1 Score: 115 bits (289), Expect = 9.760e-29
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQV 348
            Q G++G+T Y+ SKFA+ G A+ L ME   Y + VSV +PPDTDTPG+  E+  KPE THLI   GG+F+P QVAA IV G+K   F I+ G +G++V L T+G +P  S+ E   QV
Sbjct:  175 QFGLFGFTAYSPSKFAVRGFAETLFMEVKPYNVAVSVVFPPDTDTPGFENENKNKPEETHLISSAGGLFTPEQVAANIVMGIKERKFLISCGFDGFVVSLLTSGVAPVSSLFELFTQV 292          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: UPI00106D7BEF (3-ketodihydrosphingosine reductase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D7BEF)

HSP 1 Score: 115 bits (288), Expect = 1.440e-28
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQ 345
            Q+GI+GYT Y+ASKFAL G+A++L ME   +GIGVS+A+PPDTDTPG+  E+  KPE T LI    G+FSP+ VA  I+ G+++G F I  G++G+ + + T G SP  S  E I Q
Sbjct:  172 QLGIFGYTGYSASKFALRGLAESLLMEVRPHGIGVSIAFPPDTDTPGFEEENKDKPEETQLISASAGVFSPSLVAKDILNGVQSGKFLIASGMDGHFLNMLTCGASPASSRLELIIQ 288          
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Match: UPI0003F0EC84 (3-ketodihydrosphingosine reductase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EC84)

HSP 1 Score: 114 bits (285), Expect = 2.570e-28
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 QIGIYGYTLYAASKFALVGMAQALQMEA--YGIGVSVAYPPDTDTPGYARESVGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGTAGFSPCFSVSESIFQV 348
            QIG+YGYT Y ASKFAL G A+ALQME   Y I ++V++PPDTDTPG+  E++ KP+ T LI +  G+F P  VA  I+     G F   +GV+GY++   T GFSP  S+ E + QV
Sbjct:  155 QIGLYGYTAYCASKFALRGFAEALQMEVKPYDIYITVSFPPDTDTPGFQAENISKPKETTLISETAGLFQPEDVAKVIINDASLGRFLSYIGVDGYMLSNVTCGFSPVTSMMEGVQQV 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49555.12148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF9_ECTSI2.510e-4069.70Similar to follicular lymphoma variant translocati... [more]
A0A7S2RM03_9STRA1.940e-3356.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2B4SHQ7_STYPI1.790e-2952.543-ketodihydrosphingosine reductase n=2 Tax=Pocillo... [more]
A0A8J1UR32_OWEFU2.250e-2947.97Ofus.G18826 protein n=1 Tax=Owenia fusiformis TaxI... [more]
UPI00077A271A2.760e-2950.383-ketodihydrosphingosine reductase-like n=2 Tax=Ac... [more]
A0A7S2DG25_9STRA3.960e-2951.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S7JR19_PARCT6.470e-2950.433-ketodihydrosphingosine reductase (Fragment) n=2 ... [more]
UPI0009E64BE59.760e-2950.003-ketodihydrosphingosine reductase-like n=1 Tax=Or... [more]
UPI00106D7BEF1.440e-2851.283-ketodihydrosphingosine reductase-like n=1 Tax=De... [more]
UPI0003F0EC842.570e-2850.003-ketodihydrosphingosine reductase-like n=1 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49555contigH-elongata_contig49555:286..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7FNF9
KEGG rclassRC00089
KEGG koko:K04708
KEGG ReactionR02978
KEGG Pathwayko00600,ko01100,map00600,map01100
KEGG ModuleM00094,M00099
EggNOG free text desc.3-dehydrosphinganine reductase activity
EggNOG OGsKOG1210@1,KOG1210@2759
EC1.1.1.102
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-01_005600.1
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49555.12148.1prot_H-elongata_contig49555.12148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49555 286..1465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.2610533-CDS-H-elongata_contig49555:285..3661622930815.2610533-CDS-H-elongata_contig49555:285..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 286..366 +
1691679582.0032632-CDS-H-elongata_contig49555:285..3661691679582.0032632-CDS-H-elongata_contig49555:285..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 286..366 +
1622930815.2917237-CDS-H-elongata_contig49555:737..8691622930815.2917237-CDS-H-elongata_contig49555:737..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 738..869 +
1691679582.014998-CDS-H-elongata_contig49555:737..8691691679582.014998-CDS-H-elongata_contig49555:737..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 738..869 +
1622930815.3065808-CDS-H-elongata_contig49555:1291..14651622930815.3065808-CDS-H-elongata_contig49555:1291..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 1292..1465 +
1691679582.023021-CDS-H-elongata_contig49555:1291..14651691679582.023021-CDS-H-elongata_contig49555:1291..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49555 1292..1465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49555.12148.1

>prot_H-elongata_contig49555.12148.1 ID=prot_H-elongata_contig49555.12148.1|Name=mRNA_H-elongata_contig49555.12148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
QIGIYGYTLYAASKFALVGMAQALQMEAYGIGVSVAYPPDTDTPGYARES
VGKPETTHLIEKGGGMFSPAQVAAKIVQGLKAGDFCITVGVEGYLVGLGT
AGFSPCFSVSESIFQVQKVNVRVSVFVAL
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mRNA from alignment at H-elongata_contig49555:286..1465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49555.12148.1 ID=mRNA_H-elongata_contig49555.12148.1|Name=mRNA_H-elongata_contig49555.12148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1180bp|location=Sequence derived from alignment at H-elongata_contig49555:286..1465+ (Himanthalia elongata Himel1 dioecious)
CAGATTGGTATCTACGGATACACCCTTTATGCTGCGTCGAAGTTCGCCCT TGTTGGAATGGCGCAAGCCTTGCAGATGGAGGTGCGTTGGAAGGGACAAT ATACTAAAATCGAGGGCTATTCATGAAAGAGTAAAGTATTAGGCCCCCGA CTAAAGGTAATGATGAGCGTTTGATTGCCAAACAGCTGATGTCCGTTTCC TACCAAAACTGCGAAAAAGCAAGAGGCATTGCTTATCCGCGAGATAGAAT GCGAAACTTTCCTGTTGCTTGGTTATATTGATGATCCTCGAATTTTAGTG ATTGATTGGTCCATCAAACTCCCTTGTTCGCTGACTATTATTAGGGGGGA AATGACTCGAAGCAATCAGTAGCAGCGCACAAAAATCACCCTGCAACACG CAGATAGCAAGCACTTCATAGGTCGCGTTCTTGGGTGTTCGGCCAGGTTT AGGCGTACGGTATCGGCGTTTCCGTCGCCTACCCTCCGGACACGGATACG CCAGGGTACGCACGAGAAAGCGTGGGGAAGCCGGAAACAACGCACCTGAT CGAGAAGGGTGGCGGAATGTTCTCTCCCGCCCAAGTGAGTGTATCTCTAG CCCAAACATGCTACCCGTCGCGTACTGGCTCGAAGTCTTTCTCTCTGTGG TGAATCGTGCGATTGAGAGACGTGGTACCCAGCGCCCCGCGCAATGCGCT CGGCCATTGCAATCATGAGGTCTGCACGGGCCATCATGTGGTTAAACCCG ATGGAAGGTGCGGAGCACCTCTTTCATCTCTCCCCCTTGTGGAGTTTCCA GCGATGGTTAAGGTTTACCTTTTTCCCGACCTACCTTTTTCCCGATCTTG CAACCGGGAATCGTGCATATTTTCTTGTATATTTGCCCCAGCTTCGATCG ACCGTGGATCCTTCTAGTCTACGCCCCAGTTTAATATTTACTGGTGTGAG GAGATGAAATCTTAAAGAGGCGTCCGTCGGTAAAATCCGACGTCGTGTTG CTGCAGGTGGCGGCGAAGATTGTCCAGGGTTTAAAGGCTGGGGACTTTTG CATCACGGTGGGCGTTGAGGGATACCTCGTGGGGCTTGGGACGGCGGGTT TTTCACCATGTTTTTCGGTGTCGGAGTCAATTTTTCAGGTGCAGAAAGTC AATGTTCGCGTGTCCGTATTTGTGGCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig49555:286..1465+

>mRNA_H-elongata_contig49555.12148.1 ID=mRNA_H-elongata_contig49555.12148.1|Name=mRNA_H-elongata_contig49555.12148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig49555:286..1465+ (Himanthalia elongata Himel1 dioecious)
CAGATTGGTATCTACGGATACACCCTTTATGCTGCGTCGAAGTTCGCCCT
TGTTGGAATGGCGCAAGCCTTGCAGATGGAGCAGATTGGTATCTACGGAT
ACACCCTTTATGCTGCGTCGAAGTTCGCCCTTGTTGGAATGGCGCAAGCC
TTGCAGATGGAGGCGTACGGTATCGGCGTTTCCGTCGCCTACCCTCCGGA
CACGGATACGCCAGGGTACGCACGAGAAAGCGTGGGGAAGCCGGAAACAA
CGCACCTGATCGAGAAGGGTGGCGGAATGTTCTCTCCCGCCCAAGCGTAC
GGTATCGGCGTTTCCGTCGCCTACCCTCCGGACACGGATACGCCAGGGTA
CGCACGAGAAAGCGTGGGGAAGCCGGAAACAACGCACCTGATCGAGAAGG
GTGGCGGAATGTTCTCTCCCGCCCAAGTGGCGGCGAAGATTGTCCAGGGT
TTAAAGGCTGGGGACTTTTGCATCACGGTGGGCGTTGAGGGATACCTCGT
GGGGCTTGGGACGGCGGGTTTTTCACCATGTTTTTCGGTGTCGGAGTCAA
TTTTTCAGGTGCAGAAAGTCAATGTTCGCGTGTCCGTATTTGTGGCTTTG
GTGGCGGCGAAGATTGTCCAGGGTTTAAAGGCTGGGGACTTTTGCATCAC
GGTGGGCGTTGAGGGATACCTCGTGGGGCTTGGGACGGCGGGTTTTTCAC
CATGTTTTTCGGTGTCGGAGTCAATTTTTCAGGTGCAGAAAGTCAATGTT
CGCGTGTCCGTATTTGTGGCTTTG
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