mRNA_H-elongata_contig49503.12140.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: D7FGQ3_ECTSI (Acyl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ3_ECTSI) HSP 1 Score: 315 bits (807), Expect = 2.650e-102 Identity = 155/210 (73.81%), Postives = 176/210 (83.81%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPK----DVVFRELPKTATGKVPRRHVL 618
+VYGP T+ LWDDSWD L+E R ARLPWQAPS VH+MYVAE+ G AVPADG TLGEVLLRGNAVM GYL N++AT +AFDQG+WFRTGD+AVQHP GRVE+KDR KDIIISGGENISSIEVETALHQHE +LHVAVVA+PD FWGE PVAV+E KPGA+ VS +II HAR +LA FK PK DV+FRELPKTATGK+ ++HVL
Sbjct: 323 EVYGPCTSNLWDDSWDDLEEDERGARLPWQAPSLVHEMYVAEKGGFDAVPADGVTLGEVLLRGNAVMKGYLNNEEATKEAFDQGQWFRTGDMAVQHPGGRVEIKDREKDIIISGGENISSIEVETALHQHEGVLHVAVVALPDPFWGETPVAVIEAKPGAK---VSGEDIISHARSILAKFKCPKCPIKDVIFRELPKTATGKI-QKHVL 528
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A831XPP3_9GAMM (Acyl-CoA synthetase n=1 Tax=Halothiobacillaceae bacterium TaxID=2268194 RepID=A0A831XPP3_9GAMM) HSP 1 Score: 222 bits (566), Expect = 5.160e-69 Identity = 115/202 (56.93%), Postives = 142/202 (70.30%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
+ YGPAT C W D W+SLD SR A++ Q + + DM VA+ + VPADG T+GE++LRG+ VM GYLKN ATA+AF +G W+ TGDLAV HP+G VE+KDR+KDIIISGGENISS+EVE AL+ H ++ AVVA PD WGE P A V +KP AE TV +IID R LA FK P+ VVF LPKT+TGK+
Sbjct: 93 ESYGPATVCAWQDGWESLDLQSRAAKMARQGVRYPTLQDMMVADSRTMEPVPADGETVGEIMLRGHTVMRGYLKNPDATAEAF-RGGWYHTGDLAVVHPDGYVEVKDRSKDIIISGGENISSLEVEEALYHHPDVMEAAVVARPDGTWGETPCAFVALKPEAEG-TVPERDIIDWCRDHLAHFKCPRTVVFGPLPKTSTGKI 292
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: UPI00123B803E (acyl-CoA synthetase n=1 Tax=Rhabdaerophilum calidifontis TaxID=2604328 RepID=UPI00123B803E) HSP 1 Score: 222 bits (566), Expect = 2.710e-66 Identity = 115/202 (56.93%), Postives = 145/202 (71.78%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
+ YGPA W WDSL +A+R AR+ Q ++ + D+ V + E ++ VPADG T+GEV+ RGN VM GYLKN KAT +AF G WF +GDLAV HP+G ++LKDR+KDIIISGGENISSIEVE L +H A+L VAVVA PD WGE P A +E++PGAE +S A II +AR LA FK P+ V+F ELPKT+TGK+
Sbjct: 336 ETYGPAVVNEWQAQWDSLPDAARGARMARQGVNYPGLEDLDVLDPETMQPVPADGLTMGEVMFRGNIVMKGYLKNPKATEEAF-AGGWFHSGDLAVMHPDGYLQLKDRSKDIIISGGENISSIEVEDVLFRHPAVLLVAVVARPDEKWGEHPCAFIELRPGAE---ISEAEIIAYARTHLAAFKAPRTVIFGELPKTSTGKI 533
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A528ATR9_9HYPH (Acyl-CoA synthetase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A528ATR9_9HYPH) HSP 1 Score: 219 bits (557), Expect = 2.950e-66 Identity = 118/218 (54.13%), Postives = 146/218 (66.97%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVP--RRHVLAPASSVSL 642
+ YGPA W WD LD+ R AR Q + + D+ V + E + PADG T+GEV+ RGN VM GYLKN KA+ +AF G WF +GDL V+HP+G ++LKDR+KDIIISGGENISSIEVE AL++H A+ VVA PD WGEVPVA VE+KPG T + A IIDH R +LA FKVPK V F E+PKT+TGK+ R +A AS+ L
Sbjct: 206 ETYGPAVVNEWHGEWDGLDKGLRVARKARQGVRYAALEDLTVMDPETMAETPADGETIGEVMFRGNIVMKGYLKNRKASDEAF-AGGWFHSGDLGVRHPDGYIQLKDRSKDIIISGGENISSIEVEEALYKHPAVASCGVVARPDDKWGEVPVAYVELKPGG---TATEAEIIDHCRALLARFKVPKAVTFAEIPKTSTGKIQKFRLREMAKASAPQL 419
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: UPI00187D5893 (acyl-CoA synthetase n=1 Tax=Ramlibacter aquaticus TaxID=2780094 RepID=UPI00187D5893) HSP 1 Score: 222 bits (565), Expect = 4.060e-66 Identity = 117/216 (54.17%), Postives = 153/216 (70.83%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVH---DMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVS 639
+VYGPATAC D W++LD R ARL + H D V + + ++ VP DG T+GE++ RGN M GYLKN+KAT +AF G WF TGDLAVQ+P+G +++KDR+KDIIISGGENISSIEVE L++H A+L AVVA PD+ WGE P A VE+KPGA+ V+ A+I+ H ++ LAGFKVP+ VVF ELPKT+TGK+ + + A S +
Sbjct: 334 EVYGPATACAQHDEWNALDIGER-ARLNARQGVRYHLQRDAQVLDPQTMQPVPWDGETMGEIMFRGNITMKGYLKNEKATQEAF-AGGWFHTGDLAVQYPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLAAAVVAKPDAKWGETPCAFVEVKPGAQ---VTPADIVAHCKQHLAGFKVPRAVVFGELPKTSTGKIQKFELRKQAGSAT 544
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A154W8B2_9PROT (Acyl-CoA synthetase n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154W8B2_9PROT) HSP 1 Score: 221 bits (562), Expect = 1.260e-65 Identity = 115/220 (52.27%), Postives = 150/220 (68.18%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVSLTPRT 654
+ YGP+T C W + W +L+ R AR+ Q + + M V + + + VPADG T+GEVL RGN VM GYLKN KATA+AF G W+ +GDLAV HP+G +E+KDRAKDIIISGGENISS+EVE AL++H +I+ AVVA PD WGE P A V +KPGA P V A +ID R+ LA FKVPK ++F LPKT+TGK+ + + A +S P++
Sbjct: 337 ETYGPSTVCDWQEDWAALELEHRSARMARQGVHYPTLQGMRVVDPDTMADVPADGRTIGEVLFRGNTVMMGYLKNPKATAEAF-AGGWYHSGDLAVLHPDGYMEVKDRAKDIIISGGENISSLEVEEALYRHPSIMEAAVVARPDEKWGETPCAFVTLKPGA--PLVGEAEVIDWCRQKLARFKVPKTILFGPLPKTSTGKIQKFVLRQQAEQLSTPPKS 553
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A833L592_9HYPH (Fatty-acyl-CoA n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A833L592_9HYPH) HSP 1 Score: 220 bits (561), Expect = 1.590e-65 Identity = 116/208 (55.77%), Postives = 148/208 (71.15%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVL 618
+ YGPA W D WDSL EA R R+ Q ++ + D+ V + E + VP DG T+GEV+ RGN VM GYLKN KA+ +AF G WF +GDLAV HP+G ++LKDR+KD+IISGGENISSIEVE L +H A++ VAVVA PD WGE P A +E+KPG TVS A I+ +AR+ LA FKVP+ VVF +LPKT+TGKV +++VL
Sbjct: 338 ETYGPAVVNDWKDDWDSLPEAERGPRMARQGVNYPGLEDLDVLDPETMHPVPWDGQTMGEVMFRGNIVMKGYLKNPKASEEAF-AGGWFHSGDLAVMHPDGYIQLKDRSKDVIISGGENISSIEVEDVLFKHPAVMLVAVVARPDEKWGEHPCAFIELKPGT---TVSQAEIVTYARQHLAAFKVPRTVVFCDLPKTSTGKV-QKYVL 540
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A529P9K4_9HYPH (Acyl-CoA synthetase (Fragment) n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A529P9K4_9HYPH) HSP 1 Score: 216 bits (549), Expect = 1.950e-65 Identity = 111/202 (54.95%), Postives = 138/202 (68.32%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
+ YGPA W WD L++ R AR Q + + D+ V +RE + P DG T+GEV+ RGN VM GYLKN KAT +AF G WF +GDL V HP+G ++LKDR+KDIIISGGENISSIEVE AL++H A+ VVA D WGEVPVA VE+KPG + + A IIDH R ++A FKVPK VVF E+PKT+TGK+
Sbjct: 177 ETYGPAVVNEWRSEWDGLEKGLRAARKARQGVRYAALEDLTVMDRETMEETPPDGETIGEVMFRGNIVMKGYLKNRKATDEAF-AGGWFHSGDLGVMHPDGYIQLKDRSKDIIISGGENISSIEVEDALYKHAAVASCGVVAKSDDKWGEVPVAYVELKPGK---SATEAEIIDHCRTLIARFKVPKAVVFAEIPKTSTGKI 374
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A4R5PJM6_9HYPH (Acyl-CoA synthetase n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A4R5PJM6_9HYPH) HSP 1 Score: 220 bits (560), Expect = 2.190e-65 Identity = 111/202 (54.95%), Postives = 144/202 (71.29%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
+ YGPA W WD+LD+A+R R Q + + D+ V + E + AVP+DG T+GEV+ RGN VM GYLKN +AT AF+ G WF +GDL V HP+G ++LKDR+KDIIISGGENISSIEVE AL++H AI AVVA PD WGE P AV+E+KPGA T++ A +I H + +LA FK P+ VVFR++PKT+TGK+
Sbjct: 337 ETYGPAVVNEWKAEWDALDKAARTTRKARQGVRYPSLEDLSVRDPETMEAVPSDGETIGEVMFRGNIVMKGYLKNPEATRKAFEGG-WFHSGDLGVMHPDGYIQLKDRSKDIIISGGENISSIEVEDALYKHPAIATCAVVAYPDEKWGETPCAVIELKPGA---TLTEAEVIAHCQGLLARFKCPRKVVFRDVPKTSTGKI 534
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A259DDF3_9BURK (Acyl-CoA synthetase (Fragment) n=1 Tax=Polynucleobacter sp. 24-46-87 TaxID=1970423 RepID=A0A259DDF3_9BURK) HSP 1 Score: 213 bits (542), Expect = 2.440e-65 Identity = 112/216 (51.85%), Postives = 149/216 (68.98%), Query Frame = 1
Query: 1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVH---DMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVS 639
+VYGPA C+ D W+ +D R ARL + H + V + E L VPADG T+GE++ +GN M GYLKN+KAT +AF+ G WF +GDLAV +P+G +++KDR+KDIIISGGENISS+EVE L++H A++ AVVA PD WGE P A +EIKPG E V+ A+II H ++ LAGFKVP+ +VF ELPKT+TGK+ + + A S S
Sbjct: 94 EVYGPAAVCVKQDEWNEVDIGER-ARLNARQGVRYHMQQAIAVLDPETLEPVPADGETMGEIMFKGNIAMKGYLKNEKATKEAFEGG-WFHSGDLAVMNPDGYIKMKDRSKDIIISGGENISSVEVEDVLYRHPAVMAAAVVAKPDDKWGETPCAFLEIKPGME---VTPADIIAHCKQHLAGFKVPRAIVFCELPKTSTGKIQKFELRKQAGSAS 304 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49503.12140.1 >prot_H-elongata_contig49503.12140.1 ID=prot_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVHDMYVAEREGLRAVPback to top mRNA from alignment at H-elongata_contig49503:361..3071+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49503.12140.1 ID=mRNA_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-elongata_contig49503:361..3071+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49503:361..3071+ >mRNA_H-elongata_contig49503.12140.1 ID=mRNA_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig49503:361..3071+ (Himanthalia elongata Himel1 dioecious)back to top |