mRNA_H-elongata_contig49503.12140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49503.12140.1
Unique NamemRNA_H-elongata_contig49503.12140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: D7FGQ3_ECTSI (Acyl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ3_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 2.650e-102
Identity = 155/210 (73.81%), Postives = 176/210 (83.81%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPK----DVVFRELPKTATGKVPRRHVL 618
            +VYGP T+ LWDDSWD L+E  R ARLPWQAPS VH+MYVAE+ G  AVPADG TLGEVLLRGNAVM GYL N++AT +AFDQG+WFRTGD+AVQHP GRVE+KDR KDIIISGGENISSIEVETALHQHE +LHVAVVA+PD FWGE PVAV+E KPGA+   VS  +II HAR +LA FK PK    DV+FRELPKTATGK+ ++HVL
Sbjct:  323 EVYGPCTSNLWDDSWDDLEEDERGARLPWQAPSLVHEMYVAEKGGFDAVPADGVTLGEVLLRGNAVMKGYLNNEEATKEAFDQGQWFRTGDMAVQHPGGRVEIKDREKDIIISGGENISSIEVETALHQHEGVLHVAVVALPDPFWGETPVAVIEAKPGAK---VSGEDIISHARSILAKFKCPKCPIKDVIFRELPKTATGKI-QKHVL 528          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A831XPP3_9GAMM (Acyl-CoA synthetase n=1 Tax=Halothiobacillaceae bacterium TaxID=2268194 RepID=A0A831XPP3_9GAMM)

HSP 1 Score: 222 bits (566), Expect = 5.160e-69
Identity = 115/202 (56.93%), Postives = 142/202 (70.30%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
            + YGPAT C W D W+SLD  SR A++  Q   +  + DM VA+   +  VPADG T+GE++LRG+ VM GYLKN  ATA+AF +G W+ TGDLAV HP+G VE+KDR+KDIIISGGENISS+EVE AL+ H  ++  AVVA PD  WGE P A V +KP AE  TV   +IID  R  LA FK P+ VVF  LPKT+TGK+
Sbjct:   93 ESYGPATVCAWQDGWESLDLQSRAAKMARQGVRYPTLQDMMVADSRTMEPVPADGETVGEIMLRGHTVMRGYLKNPDATAEAF-RGGWYHTGDLAVVHPDGYVEVKDRSKDIIISGGENISSLEVEEALYHHPDVMEAAVVARPDGTWGETPCAFVALKPEAEG-TVPERDIIDWCRDHLAHFKCPRTVVFGPLPKTSTGKI 292          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: UPI00123B803E (acyl-CoA synthetase n=1 Tax=Rhabdaerophilum calidifontis TaxID=2604328 RepID=UPI00123B803E)

HSP 1 Score: 222 bits (566), Expect = 2.710e-66
Identity = 115/202 (56.93%), Postives = 145/202 (71.78%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
            + YGPA    W   WDSL +A+R AR+  Q  ++  + D+ V + E ++ VPADG T+GEV+ RGN VM GYLKN KAT +AF  G WF +GDLAV HP+G ++LKDR+KDIIISGGENISSIEVE  L +H A+L VAVVA PD  WGE P A +E++PGAE   +S A II +AR  LA FK P+ V+F ELPKT+TGK+
Sbjct:  336 ETYGPAVVNEWQAQWDSLPDAARGARMARQGVNYPGLEDLDVLDPETMQPVPADGLTMGEVMFRGNIVMKGYLKNPKATEEAF-AGGWFHSGDLAVMHPDGYLQLKDRSKDIIISGGENISSIEVEDVLFRHPAVLLVAVVARPDEKWGEHPCAFIELRPGAE---ISEAEIIAYARTHLAAFKAPRTVIFGELPKTSTGKI 533          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A528ATR9_9HYPH (Acyl-CoA synthetase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A528ATR9_9HYPH)

HSP 1 Score: 219 bits (557), Expect = 2.950e-66
Identity = 118/218 (54.13%), Postives = 146/218 (66.97%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVP--RRHVLAPASSVSL 642
            + YGPA    W   WD LD+  R AR   Q   +  + D+ V + E +   PADG T+GEV+ RGN VM GYLKN KA+ +AF  G WF +GDL V+HP+G ++LKDR+KDIIISGGENISSIEVE AL++H A+    VVA PD  WGEVPVA VE+KPG    T + A IIDH R +LA FKVPK V F E+PKT+TGK+   R   +A AS+  L
Sbjct:  206 ETYGPAVVNEWHGEWDGLDKGLRVARKARQGVRYAALEDLTVMDPETMAETPADGETIGEVMFRGNIVMKGYLKNRKASDEAF-AGGWFHSGDLGVRHPDGYIQLKDRSKDIIISGGENISSIEVEEALYKHPAVASCGVVARPDDKWGEVPVAYVELKPGG---TATEAEIIDHCRALLARFKVPKAVTFAEIPKTSTGKIQKFRLREMAKASAPQL 419          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: UPI00187D5893 (acyl-CoA synthetase n=1 Tax=Ramlibacter aquaticus TaxID=2780094 RepID=UPI00187D5893)

HSP 1 Score: 222 bits (565), Expect = 4.060e-66
Identity = 117/216 (54.17%), Postives = 153/216 (70.83%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVH---DMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVS 639
            +VYGPATAC   D W++LD   R ARL  +     H   D  V + + ++ VP DG T+GE++ RGN  M GYLKN+KAT +AF  G WF TGDLAVQ+P+G +++KDR+KDIIISGGENISSIEVE  L++H A+L  AVVA PD+ WGE P A VE+KPGA+   V+ A+I+ H ++ LAGFKVP+ VVF ELPKT+TGK+ +  +   A S +
Sbjct:  334 EVYGPATACAQHDEWNALDIGER-ARLNARQGVRYHLQRDAQVLDPQTMQPVPWDGETMGEIMFRGNITMKGYLKNEKATQEAF-AGGWFHTGDLAVQYPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLAAAVVAKPDAKWGETPCAFVEVKPGAQ---VTPADIVAHCKQHLAGFKVPRAVVFGELPKTSTGKIQKFELRKQAGSAT 544          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A154W8B2_9PROT (Acyl-CoA synthetase n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154W8B2_9PROT)

HSP 1 Score: 221 bits (562), Expect = 1.260e-65
Identity = 115/220 (52.27%), Postives = 150/220 (68.18%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVSLTPRT 654
            + YGP+T C W + W +L+   R AR+  Q   +  +  M V + + +  VPADG T+GEVL RGN VM GYLKN KATA+AF  G W+ +GDLAV HP+G +E+KDRAKDIIISGGENISS+EVE AL++H +I+  AVVA PD  WGE P A V +KPGA  P V  A +ID  R+ LA FKVPK ++F  LPKT+TGK+ +  +   A  +S  P++
Sbjct:  337 ETYGPSTVCDWQEDWAALELEHRSARMARQGVHYPTLQGMRVVDPDTMADVPADGRTIGEVLFRGNTVMMGYLKNPKATAEAF-AGGWYHSGDLAVLHPDGYMEVKDRAKDIIISGGENISSLEVEEALYRHPSIMEAAVVARPDEKWGETPCAFVTLKPGA--PLVGEAEVIDWCRQKLARFKVPKTILFGPLPKTSTGKIQKFVLRQQAEQLSTPPKS 553          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A833L592_9HYPH (Fatty-acyl-CoA n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A833L592_9HYPH)

HSP 1 Score: 220 bits (561), Expect = 1.590e-65
Identity = 116/208 (55.77%), Postives = 148/208 (71.15%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVL 618
            + YGPA    W D WDSL EA R  R+  Q  ++  + D+ V + E +  VP DG T+GEV+ RGN VM GYLKN KA+ +AF  G WF +GDLAV HP+G ++LKDR+KD+IISGGENISSIEVE  L +H A++ VAVVA PD  WGE P A +E+KPG    TVS A I+ +AR+ LA FKVP+ VVF +LPKT+TGKV +++VL
Sbjct:  338 ETYGPAVVNDWKDDWDSLPEAERGPRMARQGVNYPGLEDLDVLDPETMHPVPWDGQTMGEVMFRGNIVMKGYLKNPKASEEAF-AGGWFHSGDLAVMHPDGYIQLKDRSKDVIISGGENISSIEVEDVLFKHPAVMLVAVVARPDEKWGEHPCAFIELKPGT---TVSQAEIVTYARQHLAAFKVPRTVVFCDLPKTSTGKV-QKYVL 540          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A529P9K4_9HYPH (Acyl-CoA synthetase (Fragment) n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A529P9K4_9HYPH)

HSP 1 Score: 216 bits (549), Expect = 1.950e-65
Identity = 111/202 (54.95%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
            + YGPA    W   WD L++  R AR   Q   +  + D+ V +RE +   P DG T+GEV+ RGN VM GYLKN KAT +AF  G WF +GDL V HP+G ++LKDR+KDIIISGGENISSIEVE AL++H A+    VVA  D  WGEVPVA VE+KPG    + + A IIDH R ++A FKVPK VVF E+PKT+TGK+
Sbjct:  177 ETYGPAVVNEWRSEWDGLEKGLRAARKARQGVRYAALEDLTVMDRETMEETPPDGETIGEVMFRGNIVMKGYLKNRKATDEAF-AGGWFHSGDLGVMHPDGYIQLKDRSKDIIISGGENISSIEVEDALYKHAAVASCGVVAKSDDKWGEVPVAYVELKPGK---SATEAEIIDHCRTLIARFKVPKAVVFAEIPKTSTGKI 374          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A4R5PJM6_9HYPH (Acyl-CoA synthetase n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A4R5PJM6_9HYPH)

HSP 1 Score: 220 bits (560), Expect = 2.190e-65
Identity = 111/202 (54.95%), Postives = 144/202 (71.29%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSF--VHDMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV 600
            + YGPA    W   WD+LD+A+R  R   Q   +  + D+ V + E + AVP+DG T+GEV+ RGN VM GYLKN +AT  AF+ G WF +GDL V HP+G ++LKDR+KDIIISGGENISSIEVE AL++H AI   AVVA PD  WGE P AV+E+KPGA   T++ A +I H + +LA FK P+ VVFR++PKT+TGK+
Sbjct:  337 ETYGPAVVNEWKAEWDALDKAARTTRKARQGVRYPSLEDLSVRDPETMEAVPSDGETIGEVMFRGNIVMKGYLKNPEATRKAFEGG-WFHSGDLGVMHPDGYIQLKDRSKDIIISGGENISSIEVEDALYKHPAIATCAVVAYPDEKWGETPCAVIELKPGA---TLTEAEVIAHCQGLLARFKCPRKVVFRDVPKTSTGKI 534          
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Match: A0A259DDF3_9BURK (Acyl-CoA synthetase (Fragment) n=1 Tax=Polynucleobacter sp. 24-46-87 TaxID=1970423 RepID=A0A259DDF3_9BURK)

HSP 1 Score: 213 bits (542), Expect = 2.440e-65
Identity = 112/216 (51.85%), Postives = 149/216 (68.98%), Query Frame = 1
Query:    1 QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVH---DMYVAEREGLRAVPADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGRVELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVPVAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKVPRRHVLAPASSVS 639
            +VYGPA  C+  D W+ +D   R ARL  +     H    + V + E L  VPADG T+GE++ +GN  M GYLKN+KAT +AF+ G WF +GDLAV +P+G +++KDR+KDIIISGGENISS+EVE  L++H A++  AVVA PD  WGE P A +EIKPG E   V+ A+II H ++ LAGFKVP+ +VF ELPKT+TGK+ +  +   A S S
Sbjct:   94 EVYGPAAVCVKQDEWNEVDIGER-ARLNARQGVRYHMQQAIAVLDPETLEPVPADGETMGEIMFKGNIAMKGYLKNEKATKEAFEGG-WFHSGDLAVMNPDGYIKMKDRSKDIIISGGENISSVEVEDVLYRHPAVMAAAVVAKPDDKWGETPCAFLEIKPGME---VTPADIIAHCKQHLAGFKVPRAIVFCELPKTSTGKIQKFELRKQAGSAS 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49503.12140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGQ3_ECTSI2.650e-10273.81Acyl-CoA synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A831XPP3_9GAMM5.160e-6956.93Acyl-CoA synthetase n=1 Tax=Halothiobacillaceae ba... [more]
UPI00123B803E2.710e-6656.93acyl-CoA synthetase n=1 Tax=Rhabdaerophilum calidi... [more]
A0A528ATR9_9HYPH2.950e-6654.13Acyl-CoA synthetase (Fragment) n=1 Tax=Mesorhizobi... [more]
UPI00187D58934.060e-6654.17acyl-CoA synthetase n=1 Tax=Ramlibacter aquaticus ... [more]
A0A154W8B2_9PROT1.260e-6552.27Acyl-CoA synthetase n=1 Tax=Oceanibaculum pacificu... [more]
A0A833L592_9HYPH1.590e-6555.77Fatty-acyl-CoA n=1 Tax=Beijerinckiaceae bacterium ... [more]
A0A529P9K4_9HYPH1.950e-6554.95Acyl-CoA synthetase (Fragment) n=2 Tax=unclassifie... [more]
A0A4R5PJM6_9HYPH2.190e-6554.95Acyl-CoA synthetase n=4 Tax=Hyphomicrobiales TaxID... [more]
A0A259DDF3_9BURK2.440e-6551.85Acyl-CoA synthetase (Fragment) n=1 Tax=Polynucleob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49503contigH-elongata_contig49503:361..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.8
Seed ortholog evalue1.3e-82
Seed eggNOG ortholog2880.D7FGQ3
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.ligase activity
EggNOG OGsCOG0318@1,KOG1176@2759
EC3.2.1.4
COG Functional cat.IQ
CAZyGH5,GH9
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAMP-binding enzyme C-terminal domain
Ec32 orthologEc-04_001280.1
Exons6
Model size657
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49503.12140.1prot_H-elongata_contig49503.12140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49503 361..3071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.2958844-CDS-H-elongata_contig49503:360..4511622930814.2958844-CDS-H-elongata_contig49503:360..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 361..451 +
1691679581.6044688-CDS-H-elongata_contig49503:360..4511691679581.6044688-CDS-H-elongata_contig49503:360..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 361..451 +
1622930814.318051-CDS-H-elongata_contig49503:834..9301622930814.318051-CDS-H-elongata_contig49503:834..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 835..930 +
1691679581.6157312-CDS-H-elongata_contig49503:834..9301691679581.6157312-CDS-H-elongata_contig49503:834..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 835..930 +
1622930814.3325849-CDS-H-elongata_contig49503:1308..13701622930814.3325849-CDS-H-elongata_contig49503:1308..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 1309..1370 +
1691679581.6259925-CDS-H-elongata_contig49503:1308..13701691679581.6259925-CDS-H-elongata_contig49503:1308..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 1309..1370 +
1622930814.3479357-CDS-H-elongata_contig49503:1895..19841622930814.3479357-CDS-H-elongata_contig49503:1895..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 1896..1984 +
1691679581.6353717-CDS-H-elongata_contig49503:1895..19841691679581.6353717-CDS-H-elongata_contig49503:1895..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 1896..1984 +
1622930814.3608496-CDS-H-elongata_contig49503:2444..25891622930814.3608496-CDS-H-elongata_contig49503:2444..2589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 2445..2589 +
1691679581.6448584-CDS-H-elongata_contig49503:2444..25891691679581.6448584-CDS-H-elongata_contig49503:2444..2589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 2445..2589 +
1622930814.3774788-CDS-H-elongata_contig49503:2897..30711622930814.3774788-CDS-H-elongata_contig49503:2897..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 2898..3071 +
1691679581.6550994-CDS-H-elongata_contig49503:2897..30711691679581.6550994-CDS-H-elongata_contig49503:2897..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49503 2898..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49503.12140.1

>prot_H-elongata_contig49503.12140.1 ID=prot_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
QVYGPATACLWDDSWDSLDEASRDARLPWQAPSFVHDMYVAEREGLRAVP
ADGATLGEVLLRGNAVMTGYLKNDKATADAFDQGEWFRTGDLAVQHPEGR
VELKDRAKDIIISGGENISSIEVETALHQHEAILHVAVVAVPDSFWGEVP
VAVVEIKPGAEDPTVSAANIIDHARKVLAGFKVPKDVVFRELPKTATGKV
PRRHVLAPASSVSLTPRTR
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mRNA from alignment at H-elongata_contig49503:361..3071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49503.12140.1 ID=mRNA_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-elongata_contig49503:361..3071+ (Himanthalia elongata Himel1 dioecious)
CAGGTATACGGCCCGGCCACAGCTTGTTTGTGGGACGACAGCTGGGACAG CCTAGACGAGGCAAGCAGAGACGCTCGCTTACCTTGGCAAGGTGCGCGCT GCTGCTTCATAGACGCCACAGACCACTTCGACTCTTGTGTGACACGCAAA CTGTCTATGCCTCTCGGTGACGTGGCCTTCTCTCCATCGTCAAAACCCAC ACACTCTGTGGCACGGTAGACCAGCAGGGAGTTCACGGGGCGGAGATATG GACTTGGTTCGGGGGGAGGCGGTGTTTGTTTCTTTCCCAGGCTCTACTTG TGAGAAACATGGGGCCCACAGGAACCCGCCGCCACTCAAGGATTCCTCGA GCGTCAAAAATCCGTAGTGATGCTCCGCTTTTGCTCTCGTGCCTGCCCCC TCGTGACGACACCCCGCCACAGCCCACTAATACCCCTATCTTTCTCTACC TGCGTGTTTTACGCGCCGGTGCAGCACCGTCATTCGTTCACGATATGTAC GTTGCCGAGAGGGAAGGACTACGGGCCGTCCCCGCGGATGGCGCCACACT CGGAGAGGTGTTGCTGCGAGGTGTGCGATGATCGATCGTCATTGGGTCTG CTTTGCTTGTGTGTTGTTTTTTTCTGGTCGCTTTTTGAGTAATGGTTACA CTGCGACGCGTAACGGCACCGAAGCGCCCGCTACTCTCATATGCGTACGT TTCGTTAATGGTTGGATAACGCGACCCGGTAGTCCTCACGAGACGTGTTC GTTCATGAAAGCTCAAGAAGAGCCTTTTTTACGTGCAGATGCATTGTGTG GGAGACAGCGGCAGCGGACAACTCGGTCCTCGTCGAGAGATTCACAACGA GCGCGCGTGTCAGGCGTCTTTGCGCTGGCGAGGACACGACCATTTTACCC TTAGGCGGTTGGTTTACACAATTTTCGGCTCCCGCCCCCTTATTCCAGGC AACGCGGTCATGACGGGGTACCTGAAAAACGACAAGGCTACCGCGGACGC GTTTGACCAGGTGAGAATCGGAGCGCGGTTACAAACGATAATCGATCGAG AATGTTCGGAAGAGGGCGTGTGTAATGTGGATTCGATCCCCCCCCCCCCT CTATCTTACACTGGGTTCGTCGTATACAAATCCACCAGTCCCAAGTCCCG CGTGTATCATCATGTTGTTTTTAATGTAAATCTGCTATGTACTGCTCTCG AAAGAGTGTGCAGTACCGATATCCACTTTATTTAGTAGGCAGCTTTTTAC CGTTAACAAATTAACACTGATTATGAAACATCAATATCTATGGAGGGCCC ATAGCAAGAATATTATAATCCCACGTAATAATTGCACATTTATTGAGAAA AATGTAATGTGTATTCTCGTTTCAAGCTCTGGGTCATGGCGTGCTCTTAA CGGTACGTTTTTGAAATAAATTGTTGATGCGGGCTAAACTTAAGGCGCAA AAATGGATCATATCCCTCGAAATGTCTTCAGGAGAGAAATTGAGAGCCCC TTGGCACACAAAGCCCCACGATGCGCCACACGCAGGGAGAGTGGTTCCGG ACAGGAGATTTGGCGGTGCAGCATCCGGAGGGCAGAGTGGAGCTCAAGGA TAGAGCCAAGGATATCATAATAAGGTACAAGGTACTCATTGTTTGTTACC TTTTAAATGTAGGCGTGCTTAGTTTTTCCTCCTTCACGGCACCGATATGC GTTTTGACGAAATAAATTAGAAACGCCCCCCCCCCCCCCCCCCCCCCCAC ATTTTACCCCCGGGCTTTTGATTTTTCCACGCCCCAAAAACACCTCCCTC CAACCCCCCCCATTTGGAACACCCCNNNNNNNNNNTTTTTCCCTTTTTAA TTTTTTCTTTCTGGTTTTTTCCTTTTTCAAGCCCCCCTTAGCCTTTTTGA CAAAAAAAATTAAAAACCCCCCCCCCCCCCCCCCCCCCCCCCCGAATAGT TATCCCGGGTTCTCAGAGTTGAAAAGTTCCAAAATATCCACTCCTAAACG CCGCGAATGTTGAAACCCCAAGCCGCAATGGCGCGCGGGCTGTTACGTGT GCACGTTTTTATTTGTTTGTGGTGCATTTTACAGCGGGGGGGAGAACATT TCCTCGATTGAGGTGGAGACGGCCCTCCACCAGCACGAGGCGATTCTCCA CGTGGCCGTCGTGGCCGTTCCAGACTCGTTTTGGGGAGAGGTACCGGTCG CGGTGGTGGAGATCAAGCCTGGCGCAGAGGTGGGGAGAGGATGACCAAAG ACAGCAGCCATTTGTCCCTGTTATTCGTCCTCGAACATAAGTCTGGCTAT GGTGGATGAGTGTATGCGATTGATCGATCGATCGATCACCATCTAGGTTT CCACTTTAGGAAACCAGAACGAGAATTCGAGCTCGCGTCTCGATCGCCCC TCTCACGCCTTACGTAGCGGTCACCCCTGCTTCTCCAGATAATGCGTGTG TACACATGCACTCGGCCGTTATTATTCACATTGGCCTGACGTCGGCCGCG CCCTTAACCCCCCCTCCTCCTTCAACATCCCCCCGAGGACCCTACAGTAT CGGCGGCGAACATCATCGATCATGCGCGGAAGGTGCTTGCTGGTTTCAAG GTTCCTAAGGACGTGGTGTTCCGAGAGCTTCCCAAGACGGCCACCGGTAA GGTTCCAAGGCGTCACGTGCTTGCTCCCGCTTCGAGCGTCAGCCTTACGC CACGCACACGA
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Coding sequence (CDS) from alignment at H-elongata_contig49503:361..3071+

>mRNA_H-elongata_contig49503.12140.1 ID=mRNA_H-elongata_contig49503.12140.1|Name=mRNA_H-elongata_contig49503.12140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig49503:361..3071+ (Himanthalia elongata Himel1 dioecious)
CAGGTATACGGCCCGGCCACAGCTTGTTTGTGGGACGACAGCTGGGACAG
CCTAGACGAGGCAAGCAGAGACGCTCGCTTACCTTGGCAAGCAGGTATAC
GGCCCGGCCACAGCTTGTTTGTGGGACGACAGCTGGGACAGCCTAGACGA
GGCAAGCAGAGACGCTCGCTTACCTTGGCAAGCACCGTCATTCGTTCACG
ATATGTACGTTGCCGAGAGGGAAGGACTACGGGCCGTCCCCGCGGATGGC
GCCACACTCGGAGAGGTGTTGCTGCGAGCACCGTCATTCGTTCACGATAT
GTACGTTGCCGAGAGGGAAGGACTACGGGCCGTCCCCGCGGATGGCGCCA
CACTCGGAGAGGTGTTGCTGCGAGGCAACGCGGTCATGACGGGGTACCTG
AAAAACGACAAGGCTACCGCGGACGCGTTTGACCAGGCAACGCGGTCATG
ACGGGGTACCTGAAAAACGACAAGGCTACCGCGGACGCGTTTGACCAGGG
AGAGTGGTTCCGGACAGGAGATTTGGCGGTGCAGCATCCGGAGGGCAGAG
TGGAGCTCAAGGATAGAGCCAAGGATATCATAATAAGGGAGAGTGGTTCC
GGACAGGAGATTTGGCGGTGCAGCATCCGGAGGGCAGAGTGGAGCTCAAG
GATAGAGCCAAGGATATCATAATAAGCGGGGGGGAGAACATTTCCTCGAT
TGAGGTGGAGACGGCCCTCCACCAGCACGAGGCGATTCTCCACGTGGCCG
TCGTGGCCGTTCCAGACTCGTTTTGGGGAGAGGTACCGGTCGCGGTGGTG
GAGATCAAGCCTGGCGCAGAGCGGGGGGGAGAACATTTCCTCGATTGAGG
TGGAGACGGCCCTCCACCAGCACGAGGCGATTCTCCACGTGGCCGTCGTG
GCCGTTCCAGACTCGTTTTGGGGAGAGGTACCGGTCGCGGTGGTGGAGAT
CAAGCCTGGCGCAGAGGACCCTACAGTATCGGCGGCGAACATCATCGATC
ATGCGCGGAAGGTGCTTGCTGGTTTCAAGGTTCCTAAGGACGTGGTGTTC
CGAGAGCTTCCCAAGACGGCCACCGGTAAGGTTCCAAGGCGTCACGTGCT
TGCTCCCGCTTCGAGCGTCAGCCTTACGCCACGCACACGAGACCCTACAG
TATCGGCGGCGAACATCATCGATCATGCGCGGAAGGTGCTTGCTGGTTTC
AAGGTTCCTAAGGACGTGGTGTTCCGAGAGCTTCCCAAGACGGCCACCGG
TAAGGTTCCAAGGCGTCACGTGCTTGCTCCCGCTTCGAGCGTCAGCCTTA
CGCCACGCACACGA
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