mRNA_H-elongata_contig49484.12137.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: D7FHC8_ECTSI (Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC8_ECTSI) HSP 1 Score: 307 bits (787), Expect = 5.800e-97 Identity = 157/196 (80.10%), Postives = 171/196 (87.24%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVGQPLLFTTLPVVEEVAAPVGIVSKGSSKDSRQLQPGGVALADVH-DDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKFQ 591
AHLLLE LPMSFSSLEKA+KAYHQHMPAT GQPL+ ++LPVVEEVA P GIV+KG+ KD R G + A+V DDPAEH+YKVPEL LGRVFRSA PVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLR+VTVEVE SDPD+YEV SV LPELKCGDTGHAYVVLK EG+AA+PAAF+CELKFQ
Sbjct: 466 AHLLLEALPMSFSSLEKAVKAYHQHMPATAGQPLVLSSLPVVEEVAVPTGIVAKGAGKDGRS---GSASAAEVAPDDPAEHVYKVPELERLGRVFRSATPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRNVTVEVEQSDPDLYEVEASVALPELKCGDTGHAYVVLKLAEGNAAEPAAFSCELKFQ 658
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.220e-48 Identity = 107/211 (50.71%), Postives = 131/211 (62.09%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVGQ--PLLFTTLPVVEE-VAAPVGIVSKGSSKDSRQLQPGG-------------VALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKFQ 591
AHL+L+ LPMSF+SLE+A+ Y M + Q PLLF+TLPVVEE V AP+ +KG+S S+ L G A A DP +YK+PELA LGRVFRS PV LTESETEYVVRCVKHI D +VVLDF++ NTI +QML + S+P++Y V S+ LP LK TGH YVVL A +P FTCEL F+
Sbjct: 597 AHLMLDGLPMSFASLERAVGLYALSMQSGTAQAQPLLFSTLPVVEEHVPAPL---TKGTSAASKPLAGAGGGFGGGDSRVAPTAASAPATADPTAELYKIPELAALGRVFRSTAPVPLTESETEYVVRCVKHIFDAHVVLDFSVHNTIADQMLTEAS-----SEPELYSVVGSIPLPTLKYDQTGHCYVVLSRATEVAIEPVTFTCELHFK 799
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A7S2G1B7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1B7_9STRA) HSP 1 Score: 165 bits (417), Expect = 3.620e-46 Identity = 99/204 (48.53%), Postives = 126/204 (61.76%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVGQPLLFTTLPVVEEVAAPVGIVSKGSSKDSR-QLQPGGVAL-------ADVHD-DPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKFQ 591
A +LLE LPMSF+ LEKA+K Y H GQPL LPVVEE APV +KG + S + GG A AD D A +Y +PEL LGRVFRS PVELTESETEYVV+CVKHI+DG+VVL F ++NTI EQ L V+++VE S+P++Y+ S+ +L G G +VVL + A+F CEL+F+
Sbjct: 28 AAMLLEPLPMSFAHLEKAVKLYAAHGGVEDGQPLSIDALPVVEEPVAPV---AKGDALSSNPSVAAGGAATTSSGGLSADAEVVDAAAAVYAIPELGELGRVFRSCAPVELTESETEYVVKCVKHILDGHVVLQFDVTNTIAEQQLVDVSMKVENSEPELYDEILSIKCDKLVYGVQGSCFVVLARNPEAPISHASFNCELEFR 228
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A7S2UA50_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA50_9STRA) HSP 1 Score: 153 bits (387), Expect = 9.110e-42 Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVG-QPLLFTTLPVVEEVA----APVGIVSKGSSKDSRQLQPGGVALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKF 588
A+++LETLPM+F LE++I+AY + A +PL +TLP+VE+ A V +D+ G DPA IY++PELA+LGRVFRS+ PV LTE+ETEYVV+C+KHI +VVL FT+ NTI++Q L +VTV V+G+D +++EV + ++ G+T + + VL ++ P +F CEL F
Sbjct: 26 AYVMLETLPMTFDKLERSIQAYMKAPYAMESPEPLTLSTLPIVEDTVEDLKAAASAVGDDMEEDTVAALTGAAPEVKPKADPAAVIYEIPELASLGRVFRSSAPVPLTENETEYVVQCIKHIFAEHVVLQFTVQNTIDDQRLENVTVAVDGNDSELFEVSGEIAAEKIPYGETVNCFTVLDRNAEASLGPNSFACELHF 224
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A7S2S5Q9_9STRA (Coatomer subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Q9_9STRA) HSP 1 Score: 157 bits (396), Expect = 8.280e-41 Identity = 93/207 (44.93%), Postives = 119/207 (57.49%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVGQPLLFTTLPVVEEVAAPVGIVSKGSSKDSR---QLQPGGVALADVHD-------DPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLP--ELKCGDTGHAYVVLKPLEGSAADPAAFTCELKFQ 591
A +L+E LPMSFS+L++A+K Y QP+ LPVVE+ P SK ++ P A DPA +Y VPELA LGRVFRS+ PVELTESETEYVVRCVKHIMD YVVL F ++NTI EQ L VTV +EG++P++Y +++ +P L G +V L PA F+CELKF+
Sbjct: 584 ASVLVEPLPMSFSALDRAVKLYASRGGTGDEQPMTLAALPVVEDTPVPAHASSKPGTQPGAVRTMATPASAASGGAXXXXXXXXXDPAAAVYAVPELAQLGRVFRSSAPVELTESETEYVVRCVKHIMDDYVVLQFDVTNTIAEQRLEEVTVGLEGNEPELYGDEEALSVPCATLVYSTPGSCFVALARNTEVPVVPAIFSCELKFR 790
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A7S1GPQ2_CYCTE (Coatomer subunit gamma n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPQ2_CYCTE) HSP 1 Score: 150 bits (379), Expect = 1.090e-38 Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVG--QPLLFTTLPVVEEVAAPVGIVSKGSSKDSRQLQPGGVALADVHD--DPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKF 588
A++LL+ LPMSF LE+++KAY P T+ +P+ +LPVVE+ A + G P G L + D A +Y +PELA+LGR FRS++PV+LTESETEYVV+CVKHI +VVL F + NTIEEQ L +VTV ++ S+ +V+ V + + + G+T + + VL+ + P+ FTCEL+F
Sbjct: 386 AYILLDALPMSFDKLERSLKAYVA-TPTTMSSSEPVTVDSLPVVEDTADEIARAMSGGDALELDTAPLGSVLEEKKAPVDAAAVVYDIPELASLGRAFRSSVPVQLTESETEYVVQCVKHIFANHVVLQFIVQNTIEEQRLDNVTVVIDDSESEVFNVSGEIAVDGITYGETKNCFTVLERNGEAPLSPSTFTCELRF 582
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.930e-37 Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 10 HLLLETLPMSFSSLEKAIKAYHQHMPATVGQPLLFTTLPVVEEVAAPVGIVSKG---------SSKDSRQLQPGGVALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKF 588
+LLLE LP+SF +LE++++AY H + GQPL +TLPVVEE AAP ++ S PGG A +DPA +Y++PELA+LGRVFRS PV LTESETEYVV+CVKH+ + VL+F ++NTI +Q L+ + V+VE + ++Y V +S+ YVVL F CEL F
Sbjct: 593 YLLLEPLPLSFPALERSLRAYQSHPGGSAGQPLQLSTLPVVEEPAAPAPSAQTHKLGAPAPTTATAASXXAAPGG---APGGEDPAAALYQIPELADLGRVFRSTQPVWLTESETEYVVQCVKHVFQNHTVLEFKVNNTIPDQKLQDIKVQVEAQE-ELYSVERSIPAEVALYSQPASCYVVLARQADQEFVGCTFGCELHF 790
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A1Z5JGT2_FISSO (Coatomer subunit gamma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGT2_FISSO) HSP 1 Score: 144 bits (364), Expect = 1.680e-36 Identity = 79/196 (40.31%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 7 AHLLLETLPMSFSSLEKAIKAYHQHMPATVG--QPLLFTTLPVVEEVAAPVGIVSKGSSKDSRQLQPGGVALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKF 588
A ++LE+LP+SF LE+++K Y P T+ +P++ + LPVVE+ A ++ D + +V D PA +Y +PELA+LGR FRS+LPV LTESETEYVV+C+KH+ ++VL FT+ NTIE+Q L +VT+ V+ SD +++ + +K G+T + VL+ P++FTCEL+F
Sbjct: 606 AFVVLESLPISFDKLERSMKVY-MAAPDTMNNPEPIVISALPVVEDGPATSAATTETDDLDIAATVSVEETVKEVVD-PAAAVYAIPELAHLGRAFRSSLPVPLTESETEYVVQCIKHVFQQHIVLQFTVQNTIEDQRLDNVTLLVDDSDSEIFSASGEIACSGIKYGETKSCFTVLERNTEMPLSPSSFTCELRF 799
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: A0A7S1C1K4_9STRA (Coatomer subunit gamma n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1K4_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.710e-35 Identity = 84/197 (42.64%), Postives = 114/197 (57.87%), Query Frame = 1
Query: 1 SSAHLLLETLPMSFSSLEKAIKAYHQHMPATVG-QPLLFTTLPVVEEVAAPVGIVSKGSSKDSRQLQPGGVALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDPDVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAAFTCELKF 588
S+++LLLE LPMSF L +IK+Y A +P+ + LP+VE V P+ + S L A DPA +Y VP+L LGRVFRS V LTESETEYVV CVKHI + Y+VL F + NTI++Q L +VTV +E +PDV+EV + + G+T + +V+L+ +A P F CEL F
Sbjct: 595 SASYLLLEPLPMSFDQLSLSIKSYMAAPHALSSPEPMTLSALPIVETVQDPLVDSKTTGAGPSAPLDGENAKNAAEPADPAAAVYAVPDLNALGRVFRSTKTVALTESETEYVVSCVKHIYEEYIVLQFKVQNTIDDQRLENVTVCMEVDNPDVFEVTGEIPAESIGYGETKNCFVLLQRKPNAALCPLNFNCELHF 791
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Match: F0Y6T5_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T5_AURAN) HSP 1 Score: 140 bits (354), Expect = 3.710e-35 Identity = 85/196 (43.37%), Postives = 119/196 (60.71%), Query Frame = 1
Query: 13 LLLETLPMSFSSLEKAIKAYHQHMPATVGQPLL-FTTLPVVEEVAAPVGIVSKGSSKDSRQLQPGGVALADVHDDPAEHIYKVPELANLGRVFRSALPVELTESETEYVVRCVKHIMDGYVVLDFTISNTIEEQMLRSVTVEVEGSDP-DVYEVHQSVMLPELKCGDTGHAYVVLKPLEGSAADPAA-FTCELKFQ 591
LL+E LP+ F+ L +++K + +L F TLP VE+ + P + + S + P G L DD A +YK+PELA LG VFRS LP+ELTESETEYVV CVKH+MD ++VL+F I+NTI +Q+L +V++E +P + Y + SV P L CG T +++VL+ GS AA F ELKF+
Sbjct: 619 LLVEPLPVPFTRLARSLKKFEMAQDQENADLVLNFETLPHVEDHSPPTQLQATAQSS----VCPNGALL----DDSAVELYKIPELAALGTVFRSTLPLELTESETEYVVSCVKHVMDEHIVLEFAITNTIADQLLVDTSVKLEPVEPIETYSIVSSVGAPSLHCGATARSWIVLRCCPGSRMGAAAHFMAELKFR 806 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49484.12137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49484.12137.1 >prot_H-elongata_contig49484.12137.1 ID=prot_H-elongata_contig49484.12137.1|Name=mRNA_H-elongata_contig49484.12137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp SSAHLLLETLPMSFSSLEKAIKAYHQHMPATVGQPLLFTTLPVVEEVAAPback to top mRNA from alignment at H-elongata_contig49484:253..3526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49484.12137.1 ID=mRNA_H-elongata_contig49484.12137.1|Name=mRNA_H-elongata_contig49484.12137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3274bp|location=Sequence derived from alignment at H-elongata_contig49484:253..3526- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49484:253..3526- >mRNA_H-elongata_contig49484.12137.1 ID=mRNA_H-elongata_contig49484.12137.1|Name=mRNA_H-elongata_contig49484.12137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig49484:253..3526- (Himanthalia elongata Himel1 dioecious)back to top |