mRNA_H-elongata_contig49478.12135.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: D7FKX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX7_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.370e-64 Identity = 127/191 (66.49%), Postives = 142/191 (74.35%), Query Frame = 1
Query: 1 EAFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVK-CHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLSLQETDNMSGYFAPSVSAVEDESPAAHATATAAGTGIEN 570
EAFMRGTEKYAHETQLSKRVGAWQ+KLEPLM SQEKRQAFDIH YG+SVL++VAS+L P +RARA A K H +A D + EP++ LV+FG VV G+ERFDVCRLFLASLQLANNGNVRLFHG NAADQ + PFRLELL+LQ +DNMSGYFAPS SA AGTG EN
Sbjct: 651 EAFMRGTEKYAHETQLSKRVGAWQEKLEPLMESQEKRQAFDIHAYGQSVLSRVASVLTPAQRARAHTAAKGVHPKVADDAAASPEEAVQAD-TAEPDVPLVDFGTVVAGKERFDVCRLFLASLQLANNGNVRLFHGDNAADQETTPFRLELLTLQNSDNMSGYFAPSASA--------------AGTGPEN 826
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: A0A6H5KBI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI6_9PHAE) HSP 1 Score: 221 bits (563), Expect = 2.090e-64 Identity = 124/190 (65.26%), Postives = 141/190 (74.21%), Query Frame = 1
Query: 1 EAFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLSLQETDNMSGYFAPSVSAVEDESPAAHATATAAGTGIEN 570
EAFMRGTEKYAHETQLSKRVGAWQ+KLEPLM SQEKRQAFDIH YG+SVL++VAS+L P +RARA AVK + ++ + EP + LV+FG VV G+ERFDVCRLFLASLQLANNGNVRLFHG NAA+Q + PFRLELL+LQ +DNMSGYFAPS SA AGTG EN
Sbjct: 522 EAFMRGTEKYAHETQLSKRVGAWQEKLEPLMESQEKRQAFDIHAYGQSVLSRVASVLTPAQRARAHTAVKGVQPKMADNSAGSPEEAVQADTAEPEVPLVDFGTVVAGKERFDVCRLFLASLQLANNGNVRLFHGDNAAEQETTPFRLELLTLQNSDNMSGYFAPSASA--------------AGTGPEN 697
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: A0A836CG43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG43_9STRA) HSP 1 Score: 126 bits (316), Expect = 7.330e-30 Identity = 74/158 (46.84%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 28 YAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLSLQETDNMSGYFAPSV 501
YA ET LS+RVGAWQD+LEPL+R Q R AFD+ G +VL ++L R R A DA D++ + +V FG VV GRERFDVCR+FLASLQLAN+G V L H A A +QG +PF L++L ++G+FAPSV
Sbjct: 653 YAQETGLSRRVGAWQDRLEPLLREQSARAAFDMRACGDAVLASAVAVLPRAARERLAAAA----DADAPPPTKDKAAA---------VDVVAFGRVVAGRERFDVCRMFLASLQLANSGCVALRHAATAREQGRVPFELQVLRAAAPQEVAGFFAPSV 797
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: D0N0Q7_PHYIT (Condensin-2 complex subunit H2, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N0Q7_PHYIT) HSP 1 Score: 122 bits (307), Expect = 8.830e-29 Identity = 67/150 (44.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 7 FMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
FM GTEKY ET LSK+V WQDKL PL++ Q+ R FDIH YG+ ++ ++ AR K + ++ A DD + V F +V+G+ +F+VCRLFLASLQLAN+GNV LFH AA+ G +PF++ELLS
Sbjct: 475 FMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHLYGREIIGRLEEEQKNSSLARHSKTTQRDKNKRIRLATDDEESE-----------TVPFETLVDGKSQFEVCRLFLASLQLANSGNVALFHARTAAEHGQVPFKMELLS 613
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: A0A329RXK6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RXK6_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.080e-28 Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQDKL PL++ Q+ R FDIH YG+ ++ + LE + ++ H + + D R + + + S+V F +V+G+ +F+VCRLFLASLQLANNGNV L H AA+ G +PF ++LLS
Sbjct: 562 SFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHLYGREIIGR-------LEEEQKNASLAMHS---KTTKRDKNKRARLESASDEEESVVPFETLVDGKSQFEVCRLFLASLQLANNGNVALSHARTAAEHGQVPFEMQLLS 702
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: H3GF21_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GF21_PHYRM) HSP 1 Score: 122 bits (307), Expect = 1.240e-28 Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVS-AVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQ+KL PL++ Q+ AFDIH YG+ ++ D LE + ++ H A R A + R+R E + V F +V G+ F+VCRLFLASLQLANNGNV L H AD G +PF+++LLS
Sbjct: 905 SFMSGTEKYVRETDLSKQVSDWQEKLTPLLKQQDAHPAFDIHHYGREII-------DRLEEEQKSTSLDKHSRATRKDKATNKRARLDPVPEDEEEIETVPFETLVGGKSPFEVCRLFLASLQLANNGNVALSHAHTTADHGKVPFKMQLLS 1049
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: W2QP13_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QP13_PHYPN) HSP 1 Score: 120 bits (300), Expect = 1.630e-28 Identity = 66/151 (43.71%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQDKL PL++ Q+ R FDIH+YG+ ++ + LE + +++ H + A + R+R ++E V F +V+G+ +F+VCRLFLASLQLAN+GNV L H AA+ G +PF ++LLS
Sbjct: 267 SFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHQYGREIIGR-------LEEEQKNSSLEKHTKTTK-KAQNKRARLA---TEEEETETVPFETLVDGKSQFEVCRLFLASLQLANSGNVALSHARTAAEHGQVPFEMQLLS 406
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: W2PCM5_PHYPN (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2PCM5_PHYPN) HSP 1 Score: 120 bits (300), Expect = 9.530e-28 Identity = 66/151 (43.71%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQDKL PL++ Q+ R FDIH+YG+ ++ + LE + +++ H + A + R+R ++E V F +V+G+ +F+VCRLFLASLQLAN+GNV L H AA+ G +PF ++LLS
Sbjct: 567 SFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHQYGREIIGR-------LEEEQKNSSLEKHTKTTK-KAQNKRARLA---TEEEETETVPFETLVDGKSQFEVCRLFLASLQLANSGNVALSHARTAAEHGQVPFEMQLLS 706
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: A0A421FQY5_9STRA (CNDH2_C domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FQY5_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.000e-27 Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQ+KL PL++ Q+ FDIH YG+ ++ ++ E R K K + + + + +D GDG + V F +VNG+ +F+VCRLFLASLQLANNGNV L H AAD IPF ++LLS
Sbjct: 256 SFMSGTEKYVRETDLSKQVSDWQEKLTPLLKQQDAHPPFDIHHYGREIIGRLEE-----ENDRISKTPKKDKKSNKRARLD----PAGDGEE---TETVPFEILVNGKSQFEVCRLFLASLQLANNGNVALSHAHKAADHERIPFEMQLLS 394
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Match: A0A3R7KER4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KER4_9STRA) HSP 1 Score: 117 bits (294), Expect = 6.070e-27 Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 4 AFMRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVASMLDPLERARAQKAVKCHEDAGRVSAVDDRSRKGGDGSKEPNLSLVEFGAVVNGRERFDVCRLFLASLQLANNGNVRLFHGANAADQGSIPFRLELLS 456
+FM GTEKY ET LSK+V WQ+KL PL++ Q+ FDIH YG+ ++ ++ E R K K + + + + +D GDG + V F +VNG+ +F+VCRLFLASLQLANNGNV L H AAD IPF ++LLS
Sbjct: 564 SFMSGTEKYVRETDLSKQVSDWQEKLTPLLKQQDAHPPFDIHHYGREIIGRLEE-----ENDRISKTPKKDKKSNKRARLD----PAGDGGE---TETVPFEILVNGKSQFEVCRLFLASLQLANNGNVALSHAHKAADHERIPFEMQLLS 702 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49478.12135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49478.12135.1 >prot_H-elongata_contig49478.12135.1 ID=prot_H-elongata_contig49478.12135.1|Name=mRNA_H-elongata_contig49478.12135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp MRGTEKYAHETQLSKRVGAWQDKLEPLMRSQEKRQAFDIHKYGKSVLTKVback to top mRNA from alignment at H-elongata_contig49478:316..2590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49478.12135.1 ID=mRNA_H-elongata_contig49478.12135.1|Name=mRNA_H-elongata_contig49478.12135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-elongata_contig49478:316..2590+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49478:316..2590+ >mRNA_H-elongata_contig49478.12135.1 ID=mRNA_H-elongata_contig49478.12135.1|Name=mRNA_H-elongata_contig49478.12135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig49478:316..2590+ (Himanthalia elongata Himel1 dioecious)back to top |