mRNA_H-elongata_contig4947.12133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4947.12133.1
Unique NamemRNA_H-elongata_contig4947.12133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4947.12133.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 3.260e-79
Identity = 159/314 (50.64%), Postives = 199/314 (63.38%), Query Frame = 1 
Query:    1 MRRRVATVVEETMQNRLAGTQQVDGKGKEQGHGTNAPAGGNGQQKQQDPTISAYLQAFQSAIMAKVRSMCDVQNAREQREAEGLMSEMIQFGDEMQAARKRLDATRARIARLSAESCRDSLRITDAVDNRTVAALEAKAEQARKERDEGGTL-LPSDDALGTVDDGDAAVA-----------GVFAGIDGDVLEPKVSLLIGKLSELPGPLKSVLQEIPELTAALAKMVQNVEEAMGVRDSRTEKLLGKAPPTPLP--KGNAAVAGGA--------SSRYPPEDVRATAREVRLEQARKEWEAAGVGVLGGMFS 876
            MR RV+TVV+ET +  LAG +     G   G    APA        QD   +AYL+AFQ+A+  KVR +C+VQ+ARE RE + L+ E+ QF  +++AAR RL ATRAR+ARLSA++CRD+LR+++A D+R  A LEA    AR+E + GG L L  DDA                       G+F G++  V+EPKVS LIGK++ELPGPLKSVLQEIPELTA+LA  VQ  E A+    SRTE LLGKAPPTPL   KG  A               RYPPED RA ARE R++QARKEWEA GVGV+GG+F+
Sbjct:    1 MRYRVSTVVDETTKKSLAGKK----SGSSAGVAVVAPA--------QDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4947.12133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI3.260e-7950.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4947contigH-elongata_contig4947:1495..2373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Exons1
Model size879
Cds size879
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.5722682-CDS-H-elongata_contig4947:1494..23731622930813.5722682-CDS-H-elongata_contig4947:1494..2373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4947 1495..2373 -
1691679581.2909424-CDS-H-elongata_contig4947:1494..23731691679581.2909424-CDS-H-elongata_contig4947:1494..2373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4947 1495..2373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4947.12133.1prot_H-elongata_contig4947.12133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4947 1495..2373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4947.12133.1

>prot_H-elongata_contig4947.12133.1 ID=prot_H-elongata_contig4947.12133.1|Name=mRNA_H-elongata_contig4947.12133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MRRRVATVVEETMQNRLAGTQQVDGKGKEQGHGTNAPAGGNGQQKQQDPT
ISAYLQAFQSAIMAKVRSMCDVQNAREQREAEGLMSEMIQFGDEMQAARK
RLDATRARIARLSAESCRDSLRITDAVDNRTVAALEAKAEQARKERDEGG
TLLPSDDALGTVDDGDAAVAGVFAGIDGDVLEPKVSLLIGKLSELPGPLK
SVLQEIPELTAALAKMVQNVEEAMGVRDSRTEKLLGKAPPTPLPKGNAAV
AGGASSRYPPEDVRATAREVRLEQARKEWEAAGVGVLGGMFS*
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mRNA from alignment at H-elongata_contig4947:1495..2373-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4947.12133.1 ID=mRNA_H-elongata_contig4947.12133.1|Name=mRNA_H-elongata_contig4947.12133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=879bp|location=Sequence derived from alignment at H-elongata_contig4947:1495..2373- (Himanthalia elongata Himel1 dioecious)
ATGAGGCGCAGGGTTGCCACTGTCGTGGAGGAAACTATGCAGAACCGGCT
GGCGGGCACCCAGCAGGTAGATGGAAAAGGCAAAGAGCAAGGACATGGAA
CCAACGCACCTGCTGGCGGCAATGGGCAGCAGAAACAGCAAGACCCAACA
ATATCGGCCTACCTCCAGGCCTTTCAGTCCGCGATCATGGCCAAGGTGAG
GTCCATGTGCGACGTACAGAATGCTCGTGAGCAGCGCGAGGCCGAAGGGC
TCATGAGCGAGATGATTCAATTTGGCGACGAGATGCAGGCTGCAAGGAAG
AGACTCGACGCCACGCGCGCGCGAATCGCGCGGTTATCGGCCGAATCTTG
CCGAGATTCCTTGCGAATCACCGATGCAGTGGATAACCGCACCGTCGCCG
CTCTCGAGGCCAAGGCAGAGCAGGCCAGAAAGGAGAGAGACGAGGGTGGA
ACGCTCCTGCCATCTGACGACGCTTTAGGTACCGTAGATGACGGTGATGC
CGCAGTCGCGGGCGTGTTTGCAGGAATTGATGGCGACGTCCTCGAGCCCA
AAGTTTCCTTGCTGATCGGTAAGCTCTCGGAGCTGCCCGGGCCCCTGAAG
TCTGTGCTGCAAGAAATTCCCGAGCTTACGGCAGCTCTGGCGAAGATGGT
TCAGAACGTGGAGGAGGCAATGGGTGTCCGGGACAGTCGAACAGAGAAGT
TGTTGGGCAAAGCGCCCCCGACGCCTCTGCCGAAGGGTAATGCCGCGGTG
GCCGGGGGGGCGAGTTCGCGATATCCGCCGGAAGACGTTCGAGCAACGGC
AAGGGAAGTGCGGTTGGAGCAGGCGAGGAAGGAGTGGGAGGCTGCGGGAG
TCGGCGTGCTCGGGGGGATGTTCAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig4947:1495..2373-

>mRNA_H-elongata_contig4947.12133.1 ID=mRNA_H-elongata_contig4947.12133.1|Name=mRNA_H-elongata_contig4947.12133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig4947:1495..2373- (Himanthalia elongata Himel1 dioecious)
ATGAGGCGCAGGGTTGCCACTGTCGTGGAGGAAACTATGCAGAACCGGCT
GGCGGGCACCCAGCAGGTAGATGGAAAAGGCAAAGAGCAAGGACATGGAA
CCAACGCACCTGCTGGCGGCAATGGGCAGCAGAAACAGCAAGACCCAACA
ATATCGGCCTACCTCCAGGCCTTTCAGTCCGCGATCATGGCCAAGGTGAG
GTCCATGTGCGACGTACAGAATGCTCGTGAGCAGCGCGAGGCCGAAGGGC
TCATGAGCGAGATGATTCAATTTGGCGACGAGATGCAGGCTGCAAGGAAG
AGACTCGACGCCACGCGCGCGCGAATCGCGCGGTTATCGGCCGAATCTTG
CCGAGATTCCTTGCGAATCACCGATGCAGTGGATAACCGCACCGTCGCCG
CTCTCGAGGCCAAGGCAGAGCAGGCCAGAAAGGAGAGAGACGAGGGTGGA
ACGCTCCTGCCATCTGACGACGCTTTAGGTACCGTAGATGACGGTGATGC
CGCAGTCGCGGGCGTGTTTGCAGGAATTGATGGCGACGTCCTCGAGCCCA
AAGTTTCCTTGCTGATCGGTAAGCTCTCGGAGCTGCCCGGGCCCCTGAAG
TCTGTGCTGCAAGAAATTCCCGAGCTTACGGCAGCTCTGGCGAAGATGGT
TCAGAACGTGGAGGAGGCAATGGGTGTCCGGGACAGTCGAACAGAGAAGT
TGTTGGGCAAAGCGCCCCCGACGCCTCTGCCGAAGGGTAATGCCGCGGTG
GCCGGGGGGGCGAGTTCGCGATATCCGCCGGAAGACGTTCGAGCAACGGC
AAGGGAAGTGCGGTTGGAGCAGGCGAGGAAGGAGTGGGAGGCTGCGGGAG
TCGGCGTGCTCGGGGGGATGTTCAGCTGAATGAGGCGCAGGGTTGCCACT
GTCGTGGAGGAAACTATGCAGAACCGGCTGGCGGGCACCCAGCAGGTAGA
TGGAAAAGGCAAAGAGCAAGGACATGGAACCAACGCACCTGCTGGCGGCA
ATGGGCAGCAGAAACAGCAAGACCCAACAATATCGGCCTACCTCCAGGCC
TTTCAGTCCGCGATCATGGCCAAGGTGAGGTCCATGTGCGACGTACAGAA
TGCTCGTGAGCAGCGCGAGGCCGAAGGGCTCATGAGCGAGATGATTCAAT
TTGGCGACGAGATGCAGGCTGCAAGGAAGAGACTCGACGCCACGCGCGCG
CGAATCGCGCGGTTATCGGCCGAATCTTGCCGAGATTCCTTGCGAATCAC
CGATGCAGTGGATAACCGCACCGTCGCCGCTCTCGAGGCCAAGGCAGAGC
AGGCCAGAAAGGAGAGAGACGAGGGTGGAACGCTCCTGCCATCTGACGAC
GCTTTAGGTACCGTAGATGACGGTGATGCCGCAGTCGCGGGCGTGTTTGC
AGGAATTGATGGCGACGTCCTCGAGCCCAAAGTTTCCTTGCTGATCGGTA
AGCTCTCGGAGCTGCCCGGGCCCCTGAAGTCTGTGCTGCAAGAAATTCCC
GAGCTTACGGCAGCTCTGGCGAAGATGGTTCAGAACGTGGAGGAGGCAAT
GGGTGTCCGGGACAGTCGAACAGAGAAGTTGTTGGGCAAAGCGCCCCCGA
CGCCTCTGCCGAAGGGTAATGCCGCGGTGGCCGGGGGGGCGAGTTCGCGA
TATCCGCCGGAAGACGTTCGAGCAACGGCAAGGGAAGTGCGGTTGGAGCA
GGCGAGGAAGGAGTGGGAGGCTGCGGGAGTCGGCGTGCTCGGGGGGATGT
TCAGCTGA
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