mRNA_H-elongata_contig49433.12132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49433.12132.1
Unique NamemRNA_H-elongata_contig49433.12132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 9.360e-52
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    1 MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAK 312
            MGLPL LP DAHHTLYVEGIP D SERELAHIFRPFPGYISLRLRAKGGR ++G++S++ +AICFVEFESSYHATIAKMG ADYRLDK+DRN+ VLRIEYAK+K
Sbjct:  175 MGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGR-SLGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.950e-31
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:    1 MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGD----AICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGG 318
            MGLPL+LP DA  TLYVEGIP DASERE+AHIFRPFPGY SLR+R K         S+ GD    A+CFVEF+++Y A++AK+   DY++D+ D     L + YA+ + G
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHK--------ESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRG 102
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 93.6 bits (231), Expect = 6.650e-22
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:   13 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDR 351
            LRLP DA  TL+VEG+PSD S RE+AHIFRPFPGY  +RL  K  +   G+       +CFV+FE+   A  A+  +  YR+D+ +R++ +LRI++++  G   R   RGG R
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLI----ILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPG--PRPGQRGGRR 151
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6L2J5P6_TANCI (RNA-binding protein 1-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J5P6_TANCI)

HSP 1 Score: 90.9 bits (224), Expect = 6.690e-20
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:   13 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGD--AICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDRDR 357
            + LP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  R       SSGD   +CFV+FES   A  AK  +  Y+ D+ DR++ +LR+++A+  G       R G R R
Sbjct:  137 IALPPDASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR------HSSGDPLVLCFVDFESPAEAATAKDALHGYKFDEHDRDSGILRMQFARNPGVRTGGSGRSGGRSR 247
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A833QTM7_9POAL (RRM domain-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QTM7_9POAL)

HSP 1 Score: 91.7 bits (226), Expect = 1.020e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   10 PLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 315
            PL LP DA  TLYVEG+PS+ + RE++HIFRPF GY  +RL  K  +   G++      +CFV+F S  HA +A   +  YRLD  DR++ VLR+++A+  G
Sbjct:  214 PLSLPPDASSTLYVEGLPSNCTRREVSHIFRPFVGYREVRLVNKEPKHVKGST----HILCFVDFASPAHAAVALDALQGYRLDDHDRDSSVLRLQFARNPG 311
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: UPI0010A4754B (RNA-binding protein 1-like isoform X4 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4754B)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   19 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAK----AKGGGXR 327
            LP DA +TLYVEG+PS+ + RE+AHIFRPF GY  +RL +K  R   G+       +CFV+F S  HA  A   +  Y+ D+LDRN+  LR ++A+      GGG R
Sbjct:   84 LPPDATNTLYVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPL----VLCFVDFVSPAHAATAMDALQGYKFDELDRNSVNLRFQFARYPGARSGGGHR 186
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A5N6LL43_9ASTR (RRM domain-containing protein n=3 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LL43_9ASTR)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   19 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 315
            LP DA +TL++EG+PSD S RE+AHIFRPF GY  +RL  KG + + G+       +CFV+F+S   A  AK  +  Y+ D+ DR++  LR+++A+  G
Sbjct:  127 LPPDASNTLFIEGLPSDCSRREVAHIFRPFVGYKEVRLVTKGSKHSNGDPF----VLCFVDFDSPAEAATAKDALQGYKFDEHDRDSVSLRMQFARNPG 221
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: UPI001CB91082 (RNA-binding protein 1-like isoform X1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB91082)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-19
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:   19 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAK----AKGGGXRXXXRGGDRDR 357
            LP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  R    +SS     +CFV+FES   A  AK  +  Y+ D+ DR++  LR+++A+      GGG R    GG R R
Sbjct:  137 LPADASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR----HSSKDPLVLCFVDFESPAEAATAKDALQGYKFDEHDRDSVSLRMQFARYPGARTGGGARSS--GGSRGR 247
[Close]
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A5N6LL59_9ASTR (RRM domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LL59_9ASTR)

HSP 1 Score: 89.7 bits (221), Expect = 5.040e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   19 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 315
            LP DA +TL++EG+PSD S RE+AHIFRPF GY  +RL  KG + + G+       +CFV+F+S   A  AK  +  Y+ D+ DR++  LR+++A+  G
Sbjct:  208 LPPDASNTLFIEGLPSDCSRREVAHIFRPFVGYKEVRLVTKGSKHSNGDPF----VLCFVDFDSPAEAATAKDALQGYKFDEHDRDSVSLRMQFARNPG 302
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BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: V4KAG6_EUTSA (RRM domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KAG6_EUTSA)

HSP 1 Score: 88.2 bits (217), Expect = 6.560e-19
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:   13 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDR 351
            LRLP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  +   G+       +CFV+F++S  A  A+  +  YR+D+ D ++ +L+I++++  G   R   RGG R
Sbjct:  139 LRLPPDASNTLFVEGLPSNCSRREVAHIFRPFLGYREVRLVTKDSKQRNGDPI----VLCFVDFDNSACAATARTALQGYRMDEDDPDSKILQIQFSRNPG--PRPGQRGGRR 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C0_9PHAE9.360e-5282.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z002_9STRA1.950e-3153.64RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6J0KMJ8_RAPSA6.650e-2245.13nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A6L2J5P6_TANCI6.690e-2044.44RNA-binding protein 1-like n=1 Tax=Tanacetum ciner... [more]
A0A833QTM7_9POAL1.020e-1946.08RRM domain-containing protein n=1 Tax=Carex little... [more]
UPI0010A4754B1.060e-1945.79RNA-binding protein 1-like isoform X4 n=1 Tax=Pros... [more]
A0A5N6LL43_9ASTR1.400e-1944.44RRM domain-containing protein n=3 Tax=Mikania micr... [more]
UPI001CB910822.500e-1945.30RNA-binding protein 1-like isoform X1 n=1 Tax=Erig... [more]
A0A5N6LL59_9ASTR5.040e-1944.44RRM domain-containing protein n=1 Tax=Mikania micr... [more]
V4KAG6_EUTSA6.560e-1942.48RRM domain-containing protein n=1 Tax=Eutrema sals... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49433contigH-elongata_contig49433:1437..2145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog72664.XP_006416317.1
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010494,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010862,GO:0016070,GO:0016071,GO:0017069,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023056,GO:0030532,GO:0030619,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0035770,GO:0036464,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0045937,GO:0046483,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0060255,GO:0060390,GO:0060391,GO:0060393,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080090,GO:0090092,GO:0090100,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2001141
EggNOG free text desc.RNA recognition motif
EggNOG OGs28P7S@1,2QVUV@2759,37R9W@33090,3GK80@35493,3I0MC@3699
COG Functional cat.A
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.1467404-CDS-H-elongata_contig49433:1436..15801622930813.1467404-CDS-H-elongata_contig49433:1436..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49433 1437..1580 -
1691679581.2725673-CDS-H-elongata_contig49433:1436..15801691679581.2725673-CDS-H-elongata_contig49433:1436..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49433 1437..1580 -
1622930813.5299282-CDS-H-elongata_contig49433:1926..21451622930813.5299282-CDS-H-elongata_contig49433:1926..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49433 1927..2145 -
1691679581.2822077-CDS-H-elongata_contig49433:1926..21451691679581.2822077-CDS-H-elongata_contig49433:1926..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49433 1927..2145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49433.12132.1prot_H-elongata_contig49433.12132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49433 1437..2145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49433.12132.1

>prot_H-elongata_contig49433.12132.1 ID=prot_H-elongata_contig49433.12132.1|Name=mRNA_H-elongata_contig49433.12132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGR
GNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEY
AKAKGGGGRDRDRGGDRDRY*
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mRNA from alignment at H-elongata_contig49433:1437..2145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49433.12132.1 ID=mRNA_H-elongata_contig49433.12132.1|Name=mRNA_H-elongata_contig49433.12132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig49433:1437..2145- (Himanthalia elongata Himel1 dioecious)
ATGGGACTGCCTCTTCGACTCCCCGGAGACGCCCACCACACCCTGTACGT
GGAGGGAATCCCGAGCGACGCCTCGGAGCGCGAGCTGGCGCACATCTTTA
GGCCCTTCCCGGGGTACATCTCCCTCCGCCTCAGAGCCAAGGGCGGCCGG
GGCAACGTGGGAAACTCGTCTTCGAGCGGAGACGCCATCTGCTTCGTGGA
ATTCGAGTCCTCCTACCACGTGAGTATCAAGAGCTGTTGGTAGGTGGTGT
GCTTAAAATGAGTTTTTTTCGCAATGCATCTACTACCTTCGTCGATTTTA
GATGAAGAAGGTATTGCCATCGGCCGTGGCGTCCTTTATTTAGGAGTAGC
TGTAAAAGCTTATTTAGCACTCTAGCGCTTTTAAGGCTTGAAAATAACAT
TTTAGAAGGAAAAAAGGTTGGGAGTACATCTCTCACGCGGCCCGCCTTGC
TGGACACCGATGCCGGCCCACTGTTTTCGCCCGTCTTTACTGCGGTGCTG
CGGTGCGGTTGAAATTCTGCTCTGAGACATAACATCAAAATATCGAATGT
CTCTTAAATCACCAGGCGACGATCGCGAAGATGGGAGTCGCGGATTACCG
ACTAGACAAGCTTGACCGCAACACGCCGGTGCTCCGCATCGAGTACGCCA
AGGCTAAAGGAGGCGGGGGAAGGGACAGGGACCGCGGGGGGGACCGCGAC
CGCTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49433:1437..2145-

>mRNA_H-elongata_contig49433.12132.1 ID=mRNA_H-elongata_contig49433.12132.1|Name=mRNA_H-elongata_contig49433.12132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig49433:1437..2145- (Himanthalia elongata Himel1 dioecious)
ATGGGACTGCCTCTTCGACTCCCCGGAGACGCCCACCACACCCTGTACGT
GGAGGGAATCCCGAGCGACGCCTCGGAGCGCGAGCTGGCGCACATCTTTA
GGCCCTTCCCGGGGTACATCTCCCTCCGCCTCAGAGCCAAGGGCGGCCGG
GGCAACGTGGGAAACTCGTCTTCGAGCGGAGACGCCATCTGCTTCGTGGA
ATTCGAGTCCTCCTACCACATGGGACTGCCTCTTCGACTCCCCGGAGACG
CCCACCACACCCTGTACGTGGAGGGAATCCCGAGCGACGCCTCGGAGCGC
GAGCTGGCGCACATCTTTAGGCCCTTCCCGGGGTACATCTCCCTCCGCCT
CAGAGCCAAGGGCGGCCGGGGCAACGTGGGAAACTCGTCTTCGAGCGGAG
ACGCCATCTGCTTCGTGGAATTCGAGTCCTCCTACCACGCGACGATCGCG
AAGATGGGAGTCGCGGATTACCGACTAGACAAGCTTGACCGCAACACGCC
GGTGCTCCGCATCGAGTACGCCAAGGCTAAAGGAGGCGGGGGAAGGGACA
GGGACCGCGGGGGGGACCGCGACCGCTACTAAGCGACGATCGCGAAGATG
GGAGTCGCGGATTACCGACTAGACAAGCTTGACCGCAACACGCCGGTGCT
CCGCATCGAGTACGCCAAGGCTAAAGGAGGCGGGGGAAGGGACAGGGACC
GCGGGGGGGACCGCGACCGCTACTAA
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