prot_H-elongata_contig49433.12132.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49433.12132.1
Unique Nameprot_H-elongata_contig49433.12132.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 9.360e-52
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0
Query:    1 MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAK 104
            MGLPL LP DAHHTLYVEGIP D SERELAHIFRPFPGYISLRLRAKGGR ++G++S++ +AICFVEFESSYHATIAKMG ADYRLDK+DRN+ VLRIEYAK+K
Sbjct:  175 MGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGR-SLGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.950e-31
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGD----AICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGG 106
            MGLPL+LP DA  TLYVEGIP DASERE+AHIFRPFPGY SLR+R K         S+ GD    A+CFVEF+++Y A++AK+   DY++D+ D     L + YA+ + G
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHK--------ESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRG 102          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 93.6 bits (231), Expect = 6.650e-22
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    5 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDR 117
            LRLP DA  TL+VEG+PSD S RE+AHIFRPFPGY  +RL  K  +   G+       +CFV+FE+   A  A+  +  YR+D+ +R++ +LRI++++  G   R   RGG R
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLI----ILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPG--PRPGQRGGRR 151          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A6L2J5P6_TANCI (RNA-binding protein 1-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J5P6_TANCI)

HSP 1 Score: 90.9 bits (224), Expect = 6.690e-20
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0
Query:    5 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGD--AICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDRDR 119
            + LP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  R       SSGD   +CFV+FES   A  AK  +  Y+ D+ DR++ +LR+++A+  G       R G R R
Sbjct:  137 IALPPDASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR------HSSGDPLVLCFVDFESPAEAATAKDALHGYKFDEHDRDSGILRMQFARNPGVRTGGSGRSGGRSR 247          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A833QTM7_9POAL (RRM domain-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QTM7_9POAL)

HSP 1 Score: 91.7 bits (226), Expect = 1.020e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    4 PLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 105
            PL LP DA  TLYVEG+PS+ + RE++HIFRPF GY  +RL  K  +   G++      +CFV+F S  HA +A   +  YRLD  DR++ VLR+++A+  G
Sbjct:  214 PLSLPPDASSTLYVEGLPSNCTRREVSHIFRPFVGYREVRLVNKEPKHVKGST----HILCFVDFASPAHAAVALDALQGYRLDDHDRDSSVLRLQFARNPG 311          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: UPI0010A4754B (RNA-binding protein 1-like isoform X4 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4754B)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    7 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAK----AKGGGXR 109
            LP DA +TLYVEG+PS+ + RE+AHIFRPF GY  +RL +K  R   G+       +CFV+F S  HA  A   +  Y+ D+LDRN+  LR ++A+      GGG R
Sbjct:   84 LPPDATNTLYVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPL----VLCFVDFVSPAHAATAMDALQGYKFDELDRNSVNLRFQFARYPGARSGGGHR 186          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A5N6LL43_9ASTR (RRM domain-containing protein n=3 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LL43_9ASTR)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    7 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 105
            LP DA +TL++EG+PSD S RE+AHIFRPF GY  +RL  KG + + G+       +CFV+F+S   A  AK  +  Y+ D+ DR++  LR+++A+  G
Sbjct:  127 LPPDASNTLFIEGLPSDCSRREVAHIFRPFVGYKEVRLVTKGSKHSNGDPF----VLCFVDFDSPAEAATAKDALQGYKFDEHDRDSVSLRMQFARNPG 221          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: UPI001CB91082 (RNA-binding protein 1-like isoform X1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB91082)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-19
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 0
Query:    7 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAK----AKGGGXRXXXRGGDRDR 119
            LP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  R    +SS     +CFV+FES   A  AK  +  Y+ D+ DR++  LR+++A+      GGG R    GG R R
Sbjct:  137 LPADASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR----HSSKDPLVLCFVDFESPAEAATAKDALQGYKFDEHDRDSVSLRMQFARYPGARTGGGARSS--GGSRGR 247          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: A0A5N6LL59_9ASTR (RRM domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LL59_9ASTR)

HSP 1 Score: 89.7 bits (221), Expect = 5.040e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    7 LPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKG 105
            LP DA +TL++EG+PSD S RE+AHIFRPF GY  +RL  KG + + G+       +CFV+F+S   A  AK  +  Y+ D+ DR++  LR+++A+  G
Sbjct:  208 LPPDASNTLFIEGLPSDCSRREVAHIFRPFVGYKEVRLVTKGSKHSNGDPF----VLCFVDFDSPAEAATAKDALQGYKFDEHDRDSVSLRMQFARNPG 302          
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Match: V4KAG6_EUTSA (RRM domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KAG6_EUTSA)

HSP 1 Score: 88.2 bits (217), Expect = 6.560e-19
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    5 LRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGRGNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEYAKAKGGGXRXXXRGGDR 117
            LRLP DA +TL+VEG+PS+ S RE+AHIFRPF GY  +RL  K  +   G+       +CFV+F++S  A  A+  +  YR+D+ D ++ +L+I++++  G   R   RGG R
Sbjct:  139 LRLPPDASNTLFVEGLPSNCSRREVAHIFRPFLGYREVRLVTKDSKQRNGDPI----VLCFVDFDNSACAATARTALQGYRMDEDDPDSKILQIQFSRNPG--PRPGQRGGRR 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49433.12132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C0_9PHAE9.360e-5282.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z002_9STRA1.950e-3153.64RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6J0KMJ8_RAPSA6.650e-2245.13nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A6L2J5P6_TANCI6.690e-2044.44RNA-binding protein 1-like n=1 Tax=Tanacetum ciner... [more]
A0A833QTM7_9POAL1.020e-1946.08RRM domain-containing protein n=1 Tax=Carex little... [more]
UPI0010A4754B1.060e-1945.79RNA-binding protein 1-like isoform X4 n=1 Tax=Pros... [more]
A0A5N6LL43_9ASTR1.400e-1944.44RRM domain-containing protein n=3 Tax=Mikania micr... [more]
UPI001CB910822.500e-1945.30RNA-binding protein 1-like isoform X1 n=1 Tax=Erig... [more]
A0A5N6LL59_9ASTR5.040e-1944.44RRM domain-containing protein n=1 Tax=Mikania micr... [more]
V4KAG6_EUTSA6.560e-1942.48RRM domain-containing protein n=1 Tax=Eutrema sals... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 7..106
e-value: 5.6E-17
score: 63.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..78
e-value: 4.1E-7
score: 29.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..103
score: 10.531
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 7..104
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 12..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49433contigH-elongata_contig49433:1437..2145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49433.12132.1mRNA_H-elongata_contig49433.12132.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49433 1437..2145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49433.12132.1 ID=prot_H-elongata_contig49433.12132.1|Name=mRNA_H-elongata_contig49433.12132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGLPLRLPGDAHHTLYVEGIPSDASERELAHIFRPFPGYISLRLRAKGGR
GNVGNSSSSGDAICFVEFESSYHATIAKMGVADYRLDKLDRNTPVLRIEY
AKAKGGGGRDRDRGGDRDRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf