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Homology
BLAST of mRNA_H-elongata_contig49338.12118.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE) HSP 1 Score: 374 bits (960), Expect = 2.790e-118 Identity = 201/459 (43.79%), Postives = 291/459 (63.40%), Query Frame = 1
Query: 1 KCLAVTVECTHKSIGCDWKGARRDLPEHIGKCAYEKIKGFMPRLSVSLKSFHTKVQALDAQVAAQKAVVANLSMIIVSMQHKERRAVFPAVYALLWRPRDWRLYPCPHPEN-VLSNATLVCLAPIAFLAMRGLGVGSFGEGVPSMYQSVVCLVCLTTLGFLALVENDNNAPWHEVQRPLSLKGLRMGPTLVEISTGLVLYVAADGMARWKKLATAMLLLAPLTYPMLIHGLYRLQVKIKRVYDEVQRAHAQLPALPRAAEHIKDEALKVHGPVATGVFRAVTALMFGPNAVLAGQVLSRIGICGAAAVLGPETHDTQLERWQEMVTTSYPVEEKEHIRQLHRKYFRAMKAPFPRATGVTARGCLAAASVCLFVAIVYASRQFLGTIGYALMSVAFMDTAYLKWEVLVGQWVMTSLEQTTTLLNQDPSIFRNHSLYLLRSRVLVVWVVLGSMFFALAVMT 1374
+C + V+C H +GC W+GARRDL H+ CAYEKIKG +PR+S SLK HT+V L+A+V AQ A VAN ++ ++ +VFPAVYALLWRP +WRLY P P VLSN TL+CLAPI FLA+ G GV G G+ + + VCLV + LGF+AL+E+DN +P+HE+Q P LKGL +G L+E + ++Y A G+ WK+ + LLAPL YP ++ ++R +V++K +++ QRA AQ P P ++ A+K HG V GV R T L+ P L G+VL+++G+ +A LGPE D LE ++++ +++K +++ H FR ++ P P T T R +AA VCLF IV R L +GY+ + ++ +D+A+ +WE+ VG+ VM SL+QT T NQDP+ R + LLRSR+L++WVV+GS FF L ++T
Sbjct: 128 ECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLA--HQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLV-VEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPP-----VEPVAVKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRT--NQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLT 576
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Exons | 6 |
| Model size | 1993 |
| Cds size | 1257 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930811.1744425-UTR-H-elongata_contig49338:379..499 | 1622930811.1744425-UTR-H-elongata_contig49338:379..499 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49338 380..499 + |
| 1691679580.5207403-UTR-H-elongata_contig49338:379..499 | 1691679580.5207403-UTR-H-elongata_contig49338:379..499 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49338 380..499 + |
| 1622930811.2944286-UTR-H-elongata_contig49338:3512..4128 | 1622930811.2944286-UTR-H-elongata_contig49338:3512..4128 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49338 3513..4128 + |
| 1691679580.594466-UTR-H-elongata_contig49338:3512..4128 | 1691679580.594466-UTR-H-elongata_contig49338:3512..4128 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49338 3513..4128 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930811.1984084-CDS-H-elongata_contig49338:499..541 | 1622930811.1984084-CDS-H-elongata_contig49338:499..541 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 500..541 + |
| 1691679580.5291052-CDS-H-elongata_contig49338:499..541 | 1691679580.5291052-CDS-H-elongata_contig49338:499..541 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 500..541 + |
| 1622930811.217618-CDS-H-elongata_contig49338:856..1021 | 1622930811.217618-CDS-H-elongata_contig49338:856..1021 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 857..1021 + |
| 1691679580.5382984-CDS-H-elongata_contig49338:856..1021 | 1691679580.5382984-CDS-H-elongata_contig49338:856..1021 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 857..1021 + |
| 1622930811.231767-CDS-H-elongata_contig49338:1697..2072 | 1622930811.231767-CDS-H-elongata_contig49338:1697..2072 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 1698..2072 + |
| 1691679580.5489712-CDS-H-elongata_contig49338:1697..2072 | 1691679580.5489712-CDS-H-elongata_contig49338:1697..2072 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 1698..2072 + |
| 1622930811.2492862-CDS-H-elongata_contig49338:2358..2618 | 1622930811.2492862-CDS-H-elongata_contig49338:2358..2618 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 2359..2618 + |
| 1691679580.5587232-CDS-H-elongata_contig49338:2358..2618 | 1691679580.5587232-CDS-H-elongata_contig49338:2358..2618 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 2359..2618 + |
| 1622930811.264708-CDS-H-elongata_contig49338:2770..2944 | 1622930811.264708-CDS-H-elongata_contig49338:2770..2944 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 2771..2944 + |
| 1691679580.5673122-CDS-H-elongata_contig49338:2770..2944 | 1691679580.5673122-CDS-H-elongata_contig49338:2770..2944 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 2771..2944 + |
| 1622930811.280267-CDS-H-elongata_contig49338:3271..3512 | 1622930811.280267-CDS-H-elongata_contig49338:3271..3512 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 3272..3512 + |
| 1691679580.5767303-CDS-H-elongata_contig49338:3271..3512 | 1691679580.5767303-CDS-H-elongata_contig49338:3271..3512 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49338 3272..3512 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49338.12118.1 >prot_H-elongata_contig49338.12118.1 ID=prot_H-elongata_contig49338.12118.1|Name=mRNA_H-elongata_contig49338.12118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=419bp
MPRLSVSLKSFHTKVQALDAQVAAQKAVVANLSMIIVSMQHKERRAVFPA VYALLWRPRDWRLYPCPHPENVLSNATLVCLAPIAFLAMRGLGVGSFGEG VPSMYQSVVCLVCLTTLGFLALVENDNNAPWHEVQRPLSLKGLRMGPTLV EISTGLVLYVAADGMARWKKLATAMLLLAPLTYPMLIHGLYRLQVKIKRV YDEVQRAHAQLPALPRAAEHIKDEALKVHGPVATGVFRAVTALMFGPNAV LAGQVLSRIGICGAAAVLGPETHDTQLERWQEMVTTSYPVEEKEHIRQLH RKYFRAMKAPFPRATGVTARGCLAAASVCLFVAIVYASRQFLGTIGYALM SVAFMDTAYLKWEVLVGQWVMTSLEQTTTLLNQDPSIFRNHSLYLLRSRV LVVWVVLGSMFFALAVMT* back to topmRNA from alignment at H-elongata_contig49338:380..4128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig49338.12118.1 ID=mRNA_H-elongata_contig49338.12118.1|Name=mRNA_H-elongata_contig49338.12118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3749bp|location=Sequence derived from alignment at H-elongata_contig49338:380..4128+ (Himanthalia elongata Himel1 dioecious) AAATGCCTTGCTGTAACAGTGGAGTGCACGCACAAGAGTATCGGGTGCGA
CTGGAAAGGTGCTCGACGAGATCTGCCAGAACATATTGGGAAATGCGCGT
ACGAGAAGATCAAGGGCTTTATGCCTCGTTTATCGGTCTCCCTCAAGAGC
TTCCACACAAAGGTAGGTGCGATATTCGTAGCGTGTAGGTGTGCACGGGG
AGGACGAAATTTTTGAAGGGAATGCGGTCACGCTTCCTGCTGCTCCGCCA
GTCCTACTTTACGAAAGTCACGGTCAAAACAAAGTGCCCCTCCTCCTCTC
ACTTTCCTGGTAACTGTAATGGTTATCGGGTTATCGAAATAGTTGCGTTT
GCTGGCCTAGGCGCAGTCGACTATTAACTATCGATTCCAGCCATACCTCA
AAAAAGGAAGACATAACATGCCTCGCCTGGCCTGGCCTGGCCTCGCGAAT
CTTGCCTTACGATCCTGGGTTTGATAGGTGCAAGCTTTGGATGCTCAGGT
CGCGGCGCAGAAAGCGGTAGTGGCGAACCTAAGTATGATAATTGTGAGCA
TGCAGCATAAGGAGCGGCGTGCTGTGTTCCCGGCTGTGTATGCTCTCCTC
TGGAGACCACGAGATTGGCGGCTCTATCCCTGTCCGCACCCGGTGAGAGG
AGACTAATGAGACTAATGGGACGAGGTAGGAGACTAATGGGACGAAGGGG
GAGGGATGAGGAGGTGGCGCACGTTATTCGCCAATCCAGCATCAAGTGAT
CGCTCTCCTATATTTACGTGACCCTTGATATTGTCGGTTGTCAACCCAGT
ACATCCATTATTTTTGTGGGAACTATGCTGGTACCTTAACATTTTCTTCG
AAGAAACGCGCTCGCGCCTCAGGGCTTCTCTAGAGAGTGCTTGCTCTCGG
TACCGATGCTTCTTCAACCGGCTGAGGGAAGTCTTAATGACGCCGGACGA
CGACGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATCAAATTGCACATAA
CCGCGCAATCCGGCTCTGTCATGCTAACTCTTCTAGGCTACTTTCGCAGT
GATCCGCCCAAGAGGGGATTCAATAATATTTGCTACAAAAACCTCTATTA
ATGATCAGACGTGACAAAGGAGACATACTATCTGTTCATTTCATATCTAA
ACCATCAATACCTTGTGCTTCCCTTTGTACTTCCTTGTTCCCATATAGCT
TCGGTCGGCCCCTATTGAACCAACGCTCTCCCGTCGACCTTTTTTTCTAC
TGCTACCCAAATCTGTGTGTGTGTTTCGCCGACTTGTTTCGTGCTTCTGC
TGTGAATCCACCGCACAGGAAAATGTCTTGTCGAATGCGACGCTCGTCTG
CCTCGCGCCCATCGCATTTCTAGCTATGAGGGGACTTGGAGTGGGGAGTT
TCGGGGAAGGCGTACCGTCGATGTATCAAAGCGTGGTTTGCCTCGTTTGC
TTGACGACTCTTGGATTCTTAGCTTTAGTAGAAAACGATAACAACGCGCC
GTGGCACGAGGTGCAGCGACCACTCTCTTTGAAGGGCTTACGTATGGGAC
CAACCCTGGTCGAGATTTCAACGGGCCTGGTCTTGTACGTTGCAGCTGAT
GGTATGGCGAGGTGGAAGAAGCTGGCTACTGCCATGCTCCTGCTCGCTCC
GCTTACCTACCCGATGTTGATTCATGGGCTCTACCGACTCCAGGTGTGTA
GGATACTGTAGGATACTCGCACCAAGTTGCTGTTGCTGTTGCTGGCACGC
TCTCCCCCATGTTCCACCGTTTTGTCACCCCCCACACTGTGGCACCGCGT
CGAACGACCCCCCAGCAGATGATCAGACCGATCAAACCGATTAGACCGAT
CAGACCGTAACAAATATACCCCCAACTGAGATCGACAATAACGAAAAGCG
GCCAGGCCGTTGCAAGTTTAGGGTGTCGGCTTGTTCGCGAAGAAGGATCT
CCCACCTTCTCTGCGTGTTTACGGTCAAGGTGAAAATCAAGCGCGTTTAC
GACGAGGTGCAGCGAGCGCATGCGCAACTCCCCGCGCTGCCACGGGCCGC
GGAGCATATAAAAGATGAGGCTCTTAAAGTGCACGGACCAGTCGCTACCG
GGGTTTTCCGGGCGGTAACAGCGCTGATGTTCGGCCCCAACGCGGTTCTC
GCGGGTCAAGTTTTGAGCAGGATCGGGATTTGCGGTGCAGCCGCGGTACT
GGGACCGGAGACGCACGACACGCAGCTCGAGCGATGGCAGTGAGTGGCAA
GCGACTTGGTGTCGGGTGGTGCTTAGAATCATCTCATAGATGACGGTTTT
TTCTATCGGGTCGGCCTGGTGGAGTCGAAACATGCGCTGAGAGAGCAGCG
CCATTTACACTCTTAACGTCCGCTGGTGATTATTTCGATAGGGAGATGGT
CACCACCAGCTATCCTGTCGAAGAGAAAGAGCATATTCGACAGCTTCACA
GGAAGTACTTCAGGGCGATGAAGGCCCCGTTTCCGAGGGCGACGGGCGTC
ACGGCAAGGGGATGCCTAGCGGCGGCGTCTGTTTGCCTCTTCGTCGCCAT
AGTTTACGCTTCCAGGTGAGCCTTTCTCTCGCTCTTTTGCTTACACTTTC
TCTCTTGAAGAAATCCCCGTCCTAAGTCATCACGGTCGCTTACGGTCACT
TTGCTTTACAGTAGCACGTAAACCATTTCGCAGGGGCCCGTCGGGATGTG
TGCCAATATTCATAATTTTGACCCTAGCGTAATGAAAGTTGGCGAAAACA
CGGTCAAAGGGCACGGAAGCGTAACGGGGATTTTAATTCCAGTCCCTATT
TGAGGAAAAGACTGATAAGACGTTTTTTTTTCTTTTTCTGCTTCTTCCAA
TTTTGGATGTCTTAGCGTTTCGTGCGTTCGCCTTTCCATCAGACAATTTT
TGGGCACCATCGGCTATGCTTTGATGTCCGTGGCGTTCATGGACACAGCC
TACCTCAAGTGGGAGGTTCTCGTGGGCCAATGGGTGATGACATCGCTTGA
GCAGACGACAACCCTGCTCAACCAGGACCCAAGCATATTCAGGAACCATT
CGCTCTACCTGCTGCGCTCTCGCGTTTTGGTAGTCTGGGTCGTCCTTGGA
TCCATGTTTTTCGCCTTGGCAGTGATGACGTAATGAAACCTTAAGGATCC
AATCCGTTCAATAAGTACTCCCTGGAAACGCGATATTGCTCAATAGTTCT
TCGGTGGGGGAGAAGGAGCCGCTATTTCCCGACATACCTTAGTTCCTCAT
TGAGCTCTGCTAACTCAAGCGGGAAGGCGCTGGTTCTGTTGTCGATCCTC
GACTTTTATGTGACTATGTTCGGTGTCGACCCGATTTCACGCTTTCGATG
TTGGTGGTGCGGATCCATCGATCGTGGTCGTTGATCAATTTAGATAGACC
GCAGTATCCTCGAGGCGCTTTGCGCTACGGCCCATATACTAATGAACATT
AAAATAGTGCTATTGGGGGATATCGTTTCGCCAGTCGCCATTCGTAATGA
AAAATGTGCTCTCTTTACTGCGCAGACAGAGTTAGCCCAGTTAGATTCAA
GCAAAATGAAATCAGCATAATTTTTTTCGACTGACTGTGTCCATCAGTAG
TTGCCCTTCTCCCGGTTGGTGGACTACAGTACAATTACAGTACAATACAG
TATTGCTATTATTCTGAATGCTATTATTCCGAATGCTGTTCCGACTGCTA
TTATTTTTATTTGAAAGACTTTAAGCTCATTCTAACTCTCCGAACATCC back to topCoding sequence (CDS) from alignment at H-elongata_contig49338:380..4128+ >mRNA_H-elongata_contig49338.12118.1 ID=mRNA_H-elongata_contig49338.12118.1|Name=mRNA_H-elongata_contig49338.12118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2514bp|location=Sequence derived from alignment at H-elongata_contig49338:380..4128+ (Himanthalia elongata Himel1 dioecious) ATGCCTCGTTTATCGGTCTCCCTCAAGAGCTTCCACACAAAGATGCCTCG TTTATCGGTCTCCCTCAAGAGCTTCCACACAAAGGTGCAAGCTTTGGATG CTCAGGTCGCGGCGCAGAAAGCGGTAGTGGCGAACCTAAGTATGATAATT GTGAGCATGCAGCATAAGGAGCGGCGTGCTGTGTTCCCGGCTGTGTATGC TCTCCTCTGGAGACCACGAGATTGGCGGCTCTATCCCTGTCCGCACCCGG TGCAAGCTTTGGATGCTCAGGTCGCGGCGCAGAAAGCGGTAGTGGCGAAC CTAAGTATGATAATTGTGAGCATGCAGCATAAGGAGCGGCGTGCTGTGTT CCCGGCTGTGTATGCTCTCCTCTGGAGACCACGAGATTGGCGGCTCTATC CCTGTCCGCACCCGGAAAATGTCTTGTCGAATGCGACGCTCGTCTGCCTC GCGCCCATCGCATTTCTAGCTATGAGGGGACTTGGAGTGGGGAGTTTCGG GGAAGGCGTACCGTCGATGTATCAAAGCGTGGTTTGCCTCGTTTGCTTGA CGACTCTTGGATTCTTAGCTTTAGTAGAAAACGATAACAACGCGCCGTGG CACGAGGTGCAGCGACCACTCTCTTTGAAGGGCTTACGTATGGGACCAAC CCTGGTCGAGATTTCAACGGGCCTGGTCTTGTACGTTGCAGCTGATGGTA TGGCGAGGTGGAAGAAGCTGGCTACTGCCATGCTCCTGCTCGCTCCGCTT ACCTACCCGATGTTGATTCATGGGCTCTACCGACTCCAGGAAAATGTCTT GTCGAATGCGACGCTCGTCTGCCTCGCGCCCATCGCATTTCTAGCTATGA GGGGACTTGGAGTGGGGAGTTTCGGGGAAGGCGTACCGTCGATGTATCAA AGCGTGGTTTGCCTCGTTTGCTTGACGACTCTTGGATTCTTAGCTTTAGT AGAAAACGATAACAACGCGCCGTGGCACGAGGTGCAGCGACCACTCTCTT TGAAGGGCTTACGTATGGGACCAACCCTGGTCGAGATTTCAACGGGCCTG GTCTTGTACGTTGCAGCTGATGGTATGGCGAGGTGGAAGAAGCTGGCTAC TGCCATGCTCCTGCTCGCTCCGCTTACCTACCCGATGTTGATTCATGGGC TCTACCGACTCCAGGTGAAAATCAAGCGCGTTTACGACGAGGTGCAGCGA GCGCATGCGCAACTCCCCGCGCTGCCACGGGCCGCGGAGCATATAAAAGA TGAGGCTCTTAAAGTGCACGGACCAGTCGCTACCGGGGTTTTCCGGGCGG TAACAGCGCTGATGTTCGGCCCCAACGCGGTTCTCGCGGGTCAAGTTTTG AGCAGGATCGGGATTTGCGGTGCAGCCGCGGTACTGGGACCGGAGACGCA CGACACGCAGCTCGAGCGATGGCAGTGAAAATCAAGCGCGTTTACGACGA GGTGCAGCGAGCGCATGCGCAACTCCCCGCGCTGCCACGGGCCGCGGAGC ATATAAAAGATGAGGCTCTTAAAGTGCACGGACCAGTCGCTACCGGGGTT TTCCGGGCGGTAACAGCGCTGATGTTCGGCCCCAACGCGGTTCTCGCGGG TCAAGTTTTGAGCAGGATCGGGATTTGCGGTGCAGCCGCGGTACTGGGAC CGGAGACGCACGACACGCAGCTCGAGCGATGGCAGGAGATGGTCACCACC AGCTATCCTGTCGAAGAGAAAGAGCATATTCGACAGCTTCACAGGAAGTA CTTCAGGGCGATGAAGGCCCCGTTTCCGAGGGCGACGGGCGTCACGGCAA GGGGATGCCTAGCGGCGGCGTCTGTTTGCCTCTTCGTCGCCATAGTTTAC GCTTCCAGGGAGATGGTCACCACCAGCTATCCTGTCGAAGAGAAAGAGCA TATTCGACAGCTTCACAGGAAGTACTTCAGGGCGATGAAGGCCCCGTTTC CGAGGGCGACGGGCGTCACGGCAAGGGGATGCCTAGCGGCGGCGTCTGTT TGCCTCTTCGTCGCCATAGTTTACGCTTCCAGACAATTTTTGGGCACCAT CGGCTATGCTTTGATGTCCGTGGCGTTCATGGACACAGCCTACCTCAAGT GGGAGGTTCTCGTGGGCCAATGGGTGATGACATCGCTTGAGCAGACGACA ACCCTGCTCAACCAGGACCCAAGCATATTCAGGAACCATTCGCTCTACCT GCTGCGCTCTCGCGTTTTGGTAGTCTGGGTCGTCCTTGGATCCATGTTTT TCGCCTTGGCAGTGATGACGTAAACAATTTTTGGGCACCATCGGCTATGC TTTGATGTCCGTGGCGTTCATGGACACAGCCTACCTCAAGTGGGAGGTTC TCGTGGGCCAATGGGTGATGACATCGCTTGAGCAGACGACAACCCTGCTC AACCAGGACCCAAGCATATTCAGGAACCATTCGCTCTACCTGCTGCGCTC TCGCGTTTTGGTAGTCTGGGTCGTCCTTGGATCCATGTTTTTCGCCTTGG CAGTGATGACGTAA back to top
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