prot_H-elongata_contig49338.12118.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49338.12118.1
Unique Nameprot_H-elongata_contig49338.12118.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length419
Homology
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BLAST of mRNA_H-elongata_contig49338.12118.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 2.840e-100
Identity = 179/419 (42.72%), Postives = 263/419 (62.77%), Query Frame = 0 
Query:    1 MPRLSVSLKSFHTKVQALDAQVAAQKAVVANLSMIIVSMQHKERRAVFPAVYALLWRPRDWRLYPCPHPEN-VLSNATLVCLAPIAFLAMRGLGVGSFGEGVPSMYQSVVCLVCLTTLGFLALVENDNNAPWHEVQRPLSLKGLRMGPTLVEISTGLVLYVAADGMARWKKLATAMLLLAPLTYPMLIHGLYRLQVKIKRVYDEVQRAHAQLPALPRAAEHIKDEALKVHGPVATGVFRAVTALMFGPNAVLAGQVLSRIGICGAAAVLGPETHDTQLERWQEMVTTSYPVEEKEHIRQLHRKYFRAMKAPFPRATGVTARGCLAAASVCLFVAIVYASRQFLGTIGYALMSVAFMDTAYLKWEVLVGQWVMTSLEQTTTLLNQDPSIFRNHSLYLLRSRVLVVWVVLGSMFFALAVMT 418
            +PR+S SLK  HT+V  L+A+V AQ A VAN   ++     ++  +VFPAVYALLWRP +WRLY  P P   VLSN TL+CLAPI FLA+ G GV   G G+  + +  VCLV +  LGF+AL+E+DN +P+HE+Q P  LKGL +G  L+E +   ++Y A  G+  WK+    + LLAPL YP ++  ++R +V++K  +++ QRA AQ P  P     ++  A+K HG V  GV R  T L+  P   L G+VL+++G+   +A LGPE  D  LE    ++++   +++K  +++ H   FR ++ P P  T  T R  +AA  VCLF  IV   R  L  +GY+ + ++ +D+A+ +WE+ VG+ VM SL+QT T  NQDP+  R  +  LLRSR+L++WVV+GS FF L ++T
Sbjct:  168 IPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLA--HQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLV-VEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPP-----VEPVAVKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRT--NQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLT 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49338.12118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ19_9PHAE2.840e-10042.72RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 418..418
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..162
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..123
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..173
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 344..362
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 192..316
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 317..338
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 399..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 339..343
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 363..398
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availableTMHMMTMhelixcoord: 172..191
NoneNo IPR availableTMHMMTMhelixcoord: 104..123
NoneNo IPR availableTMHMMTMhelixcoord: 400..417
NoneNo IPR availableTMHMMTMhelixcoord: 316..338
NoneNo IPR availableTMHMMTMhelixcoord: 72..94
NoneNo IPR availableTMHMMTMhelixcoord: 143..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49338contigH-elongata_contig49338:500..3512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49338.12118.1mRNA_H-elongata_contig49338.12118.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49338 380..4128 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49338.12118.1 ID=prot_H-elongata_contig49338.12118.1|Name=mRNA_H-elongata_contig49338.12118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=419bp
MPRLSVSLKSFHTKVQALDAQVAAQKAVVANLSMIIVSMQHKERRAVFPA
VYALLWRPRDWRLYPCPHPENVLSNATLVCLAPIAFLAMRGLGVGSFGEG
VPSMYQSVVCLVCLTTLGFLALVENDNNAPWHEVQRPLSLKGLRMGPTLV
EISTGLVLYVAADGMARWKKLATAMLLLAPLTYPMLIHGLYRLQVKIKRV
YDEVQRAHAQLPALPRAAEHIKDEALKVHGPVATGVFRAVTALMFGPNAV
LAGQVLSRIGICGAAAVLGPETHDTQLERWQEMVTTSYPVEEKEHIRQLH
RKYFRAMKAPFPRATGVTARGCLAAASVCLFVAIVYASRQFLGTIGYALM
SVAFMDTAYLKWEVLVGQWVMTSLEQTTTLLNQDPSIFRNHSLYLLRSRV
LVVWVVLGSMFFALAVMT*
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