mRNA_H-elongata_contig49173.12099.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49173.12099.1
Unique NamemRNA_H-elongata_contig49173.12099.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 5.850e-66
Identity = 117/162 (72.22%), Postives = 117/162 (72.22%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN                                             DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:   90 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN---------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.540e-63
Identity = 110/162 (67.90%), Postives = 116/162 (71.60%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDEN                                             DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:   29 YNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDEN---------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 201 bits (510), Expect = 2.660e-63
Identity = 110/162 (67.90%), Postives = 115/162 (70.99%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   52 YNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 194 bits (493), Expect = 4.870e-61
Identity = 109/162 (67.28%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DEN                                             DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   29 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDEN---------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.300e-60
Identity = 105/162 (64.81%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALYK+KKEKPRS
Sbjct:   27 YCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 191 bits (485), Expect = 7.520e-60
Identity = 104/162 (64.20%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:   27 YTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.620e-59
Identity = 104/162 (64.20%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DEN                                             DEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   29 WNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEN---------------------------------------------DEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 189 bits (479), Expect = 6.150e-59
Identity = 103/162 (63.58%), Postives = 114/162 (70.37%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            Y K +S+TAM+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct:   27 YCKKNSITAMRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 188 bits (478), Expect = 9.310e-59
Identity = 104/162 (64.20%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DEN                                             DEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct:   29 YNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDEN---------------------------------------------DEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
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BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.320e-58
Identity = 104/162 (64.20%), Postives = 110/162 (67.90%), Query Frame = 1 
Query:    1 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 486
            YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DEN                                             DEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:   29 YNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDEN---------------------------------------------DEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI5.850e-6672.22Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA2.540e-6367.90Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
A0A4W5LQ08_9TELE2.660e-6367.9040S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
M4BPE8_HYAAE4.870e-6167.28Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A7R9WFA5_9STRA5.300e-6064.81Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
B8C1Z7_THAPS7.520e-6064.20RS23, ribosomal protein 23 40S small ribosomal sub... [more]
W7TKK2_9STRA1.620e-5964.2040s ribosomal protein s23 n=2 Tax=Monodopsidaceae ... [more]
A0A6U0RBQ4_9STRA6.150e-5963.58Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A5A8EIQ0_CAFRO9.310e-5964.20Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A8E8PJI4_9STRA1.320e-5864.2040S ribosomal protein S23 n=2 Tax=Placidida sp. Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49173contigH-elongata_contig49173:2796..3942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue1.6e-47
Seed eggNOG ortholog2880.D7FUM9
Preferred nameRPS23
KEGG koko:K02973,ko:K03124
KEGG Pathwayko03010,ko03022,ko05169,ko05203,map03010,map03022,map05169,map05203
KEGG ModuleM00177
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001666,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006606,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030490,GO:0030867,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034063,GO:0034248,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0036293,GO:0036294,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990145,GO:1990904,GO:2000112,GO:2000638,GO:2000640,GO:2001141
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1749@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryother localisation
Exons4
Model size489
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49173.12099.1prot_H-elongata_contig49173.12099.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49173 2796..3915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.0278528-CDS-H-elongata_contig49173:2795..30001622930809.0278528-CDS-H-elongata_contig49173:2795..3000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 2796..3000 -
1691679579.46169-CDS-H-elongata_contig49173:2795..30001691679579.46169-CDS-H-elongata_contig49173:2795..3000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 2796..3000 -
1622930809.0457115-CDS-H-elongata_contig49173:3292..33511622930809.0457115-CDS-H-elongata_contig49173:3292..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3293..3351 -
1691679579.4749-CDS-H-elongata_contig49173:3292..33511691679579.4749-CDS-H-elongata_contig49173:3292..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3293..3351 -
1622930809.065026-CDS-H-elongata_contig49173:3518..36571622930809.065026-CDS-H-elongata_contig49173:3518..3657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3519..3657 -
1691679579.4841058-CDS-H-elongata_contig49173:3518..36571691679579.4841058-CDS-H-elongata_contig49173:3518..3657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3519..3657 -
1622930809.0800083-CDS-H-elongata_contig49173:3856..39151622930809.0800083-CDS-H-elongata_contig49173:3856..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3857..3915 -
1691679579.5014353-CDS-H-elongata_contig49173:3856..39151691679579.5014353-CDS-H-elongata_contig49173:3856..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49173 3857..3915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.0951536-UTR-H-elongata_contig49173:3915..39421622930809.0951536-UTR-H-elongata_contig49173:3915..3942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49173 3916..3942 -
1691679579.5105724-UTR-H-elongata_contig49173:3915..39421691679579.5105724-UTR-H-elongata_contig49173:3915..3942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49173 3916..3942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49173.12099.1

>prot_H-elongata_contig49173.12099.1 ID=prot_H-elongata_contig49173.12099.1|Name=mRNA_H-elongata_contig49173.12099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFV
PRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLH
VPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEK
PRS*
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mRNA from alignment at H-elongata_contig49173:2796..3942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49173.12099.1 ID=mRNA_H-elongata_contig49173.12099.1|Name=mRNA_H-elongata_contig49173.12099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-elongata_contig49173:2796..3942- (Himanthalia elongata Himel1 dioecious)
TACAACAAGTCCCACTCCGTGACTGCGATGAAAGCGAACCCGCTCGGTGG
ATCTTCCATGGCAAAGGGCATTGTCTTGGAAAAGATGTGAGTTCGGCCGC
ACTTTTTCGACGGTTAATCTTCCTTTCTTATCTTCTTCTCGCCCCTCTGA
AAACCCGGCTGCTCTCCGTGCCTGATTAGCCCCCTCCACTGAGTTCATAA
ACCCTTTCATACATAGCCTCTTCCCTACACGGCGCACCTCTCCGTCAACC
CCTGCTGTCGGCATTATGCCAACCAAACGCCGCAGCGGTATCGAGGCGAA
GCAGCCCAATTCGGCCATCCGGAAGTGCGTACGAGTGCAGCTGATCAAGA
ACGGAAAGAAGCTGGCGGCTTTCGTTCCACGAGACGGCTGTCTGAACTTC
ACCGACGAAAACGTGAGTTGTGCCGTCAACTTCGCGATCTTTTCGAGTGC
TGAACAATAGATAAAAGACAAACACACAACTATTTACTTTTCTGTACGTA
ATTATACTCTGGACATTTATAAGGTTTTGACAATCTGTACCCCTTACCCC
ACGAAAATCTATTTCAGATCTTATAGAACCTGTCTCGCGAGTTTAGGGTG
GTTACGTCAAAAACCCAAAATAATATAAGCAGCGGGATTAGTACGGGTCA
GTTCAAACTTGACAGAGAGTACGATTGATCTACCGTAATTAGCAACTTTG
TAGTGTTACCGGTAGGCTTGTTGTAGGCGTGGCAAAAAAAGCATGGAAGG
CTATTTTTGCGGAATCTGCGGATTTAATATTTTCTCGCGCGGAAACGTCT
GTCCGTTGTTTTCTCTTCTTTTTTCCTGCATGGTGCCGTCAGCGAAAAAC
CATTGCGCTGGCCTCGTCGCCCTTTCACCAAATCCTTGTCCCAACTTTAC
AAGCCACGACATATATACACACCCAACACTAATAACTACAAGACCACCCG
ACCGCATTTCCGCTCTTCGATGCGATCCTCTTCATGTGCCCTGTCTGGCC
GCGCAGGACGAAGTGCTTATCTCAGGTTTCGGTCGCCGCGGTCACGCCGT
AGGTGACATCCCCGGTGTACGTTTCAAGGTGGTGAAGGTCGCTGGTGTAG
CGCTCCTAGCCCTCTACAAGGACAAGAAGGAAAAGCCCCGCTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49173:2796..3942-

>mRNA_H-elongata_contig49173.12099.1 ID=mRNA_H-elongata_contig49173.12099.1|Name=mRNA_H-elongata_contig49173.12099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig49173:2796..3942- (Himanthalia elongata Himel1 dioecious)
ATGAAAGCGAACCCGCTCGGTGGATCTTCCATGGCAAAGGGCATTGTCTT
GGAAAAGATATGAAAGCGAACCCGCTCGGTGGATCTTCCATGGCAAAGGG
CATTGTCTTGGAAAAGATCGGTATCGAGGCGAAGCAGCCCAATTCGGCCA
TCCGGAAGTGCGTACGAGTGCAGCTGATCAAGAACGGAAAGAAGCTGGCG
GCTTTCGTTCCACGAGACGGCTGTCTGAACTTCACCGACGAAAACGTGAG
TTGTGCCCGGTATCGAGGCGAAGCAGCCCAATTCGGCCATCCGGAAGTGC
GTACGAGTGCAGCTGATCAAGAACGGAAAGAAGCTGGCGGCTTTCGTTCC
ACGAGACGGCTGTCTGAACTTCACCGACGAAAACGTGAGTTGTGCCTTTA
GGGTGGTTACGTCAAAAACCCAAAATAATATAAGCAGCGGGATTAGTACG
GGTCATTTAGGGTGGTTACGTCAAAAACCCAAAATAATATAAGCAGCGGG
ATTAGTACGGGTCAACCACCCGACCGCATTTCCGCTCTTCGATGCGATCC
TCTTCATGTGCCCTGTCTGGCCGCGCAGGACGAAGTGCTTATCTCAGGTT
TCGGTCGCCGCGGTCACGCCGTAGGTGACATCCCCGGTGTACGTTTCAAG
GTGGTGAAGGTCGCTGGTGTAGCGCTCCTAGCCCTCTACAAGGACAAGAA
GGAAAAGCCCCGCTCTTAAACCACCCGACCGCATTTCCGCTCTTCGATGC
GATCCTCTTCATGTGCCCTGTCTGGCCGCGCAGGACGAAGTGCTTATCTC
AGGTTTCGGTCGCCGCGGTCACGCCGTAGGTGACATCCCCGGTGTACGTT
TCAAGGTGGTGAAGGTCGCTGGTGTAGCGCTCCTAGCCCTCTACAAGGAC
AAGAAGGAAAAGCCCCGCTCTTAA
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