prot_H-elongata_contig49173.12099.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49173.12099.1
Unique Nameprot_H-elongata_contig49173.12099.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.980e-59
Identity = 108/153 (70.59%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN                                             DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:   99 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN---------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.110e-57
Identity = 102/153 (66.67%), Postives = 107/153 (69.93%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDEN                                             DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:   38 MKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDEN---------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 184 bits (467), Expect = 6.490e-57
Identity = 102/153 (66.67%), Postives = 106/153 (69.28%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   61 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A7J9IJV7_9ROSI (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9IJV7_9ROSI)

HSP 1 Score: 183 bits (465), Expect = 2.170e-56
Identity = 99/154 (64.29%), Postives = 116/154 (75.32%), Query Frame = 0
Query:    5 PLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDP-----LHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            P  GSS AKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVP DGCLN+ +ENV  +  +       +   G+S G    RI AL+  P     + +  +  QDEVLI+GFGR+GHAVGDIPGVRFKVVKV+GV+LLAL+K+KKEKPRS
Sbjct:   33 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVPTSLALALGNKNASFFQGLSHGNI--RILALKSAPCALGNIDLGLVQFQDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 184          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.370e-55
Identity = 98/153 (64.05%), Postives = 107/153 (69.93%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            M+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct:   36 MRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.950e-55
Identity = 99/153 (64.71%), Postives = 105/153 (68.63%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALYK+KKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A7J8YZJ0_9ROSI (Uncharacterized protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J8YZJ0_9ROSI)

HSP 1 Score: 183 bits (465), Expect = 2.280e-55
Identity = 99/154 (64.29%), Postives = 116/154 (75.32%), Query Frame = 0
Query:    5 PLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDP-----LHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            P  GSS AKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVP DGCLN+ +ENV  +  +       +   G+S G    RI AL+  P     + +  +  QDEVLI+GFGR+GHAVGDIPGVRFKVVKV+GV+LLAL+K+KKEKPRS
Sbjct:  110 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVPTSLALALGNKNASFFQGLSHGNI--RILALKSAPCALDNIDLGLVQFQDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 261          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.190e-55
Identity = 98/153 (64.05%), Postives = 105/153 (68.63%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DEN                                             DEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   38 MKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEN---------------------------------------------DEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: A0A5D6XQ53_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ53_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.430e-55
Identity = 99/153 (64.71%), Postives = 105/153 (68.63%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK VRVQLIKN KK+AAFVPRDGCLN+ DEN                                             DEVLI+GFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNSKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108          
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 177 bits (450), Expect = 1.120e-54
Identity = 97/153 (63.40%), Postives = 105/153 (68.63%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLHVPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 153
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                             DEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN---------------------------------------------DEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49173.12099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI1.980e-5970.59Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA3.110e-5766.67Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
A0A4W5LQ08_9TELE6.490e-5766.6740S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
A0A7J9IJV7_9ROSI2.170e-5664.29Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
A0A6U0RBQ4_9STRA1.370e-5564.05Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A7R9WFA5_9STRA1.950e-5564.71Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
A0A7J8YZJ0_9ROSI2.280e-5564.29Uncharacterized protein n=4 Tax=Gossypium TaxID=36... [more]
W7TKK2_9STRA4.190e-5564.0540s ribosomal protein s23 n=2 Tax=Monodopsidaceae ... [more]
A0A5D6XQ53_9STRA7.430e-5564.71Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
B8C1Z7_THAPS1.120e-5463.40RS23, ribosomal protein 23 40S small ribosomal sub... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 98..153
e-value: 2.6E-6
score: 24.8
coord: 1..73
e-value: 4.4E-17
score: 59.7
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 104..152
e-value: 4.0E-15
score: 55.4
coord: 2..66
e-value: 1.9E-26
score: 91.9
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..64
coord: 104..153
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 25..32
NoneNo IPR availableGENE3D2.40.50.140coord: 83..153
e-value: 1.3E-20
score: 75.0
coord: 1..82
e-value: 5.0E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR11652:SF4040S RIBOSOMAL PROTEIN S23-1-RELATEDcoord: 4..64
NoneNo IPR availablePANTHERPTHR11652:SF4040S RIBOSOMAL PROTEIN S23-1-RELATEDcoord: 104..153
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..64
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 105..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49173contigH-elongata_contig49173:2796..3915 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49173.12099.1mRNA_H-elongata_contig49173.12099.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49173 2796..3942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49173.12099.1 ID=prot_H-elongata_contig49173.12099.1|Name=mRNA_H-elongata_contig49173.12099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFV
PRDGCLNFTDENVSCAFRVVTSKTQNNISSGISTGQPPDRISALRCDPLH
VPCLAAQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEK
PRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold