mRNA_H-elongata_contig49160.12096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49160.12096.1
Unique NamemRNA_H-elongata_contig49160.12096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Match: A0A3P3F368_9HYPH (Molecular chaperone GroEL (Fragment) n=1 Tax=Mesorhizobium tamadayense TaxID=425306 RepID=A0A3P3F368_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 1.500e-5
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGG 120
            VRTAL DA S+AALL+TAEAM+TD+PA ++AP  G  MGG
Sbjct:   64 VRTALQDAGSIAALLITAEAMITDIPAKDTAPSPGGGMGG 103
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BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.090e-5
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGG 120
            VRTAL+DAQSVAALLMTAEAMV DLP +E AP +  PMGG
Sbjct:  525 VRTALVDAQSVAALLMTAEAMVADLP-EEEAPAS--PMGG 561
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3P3F368_9HYPH1.500e-567.50Molecular chaperone GroEL (Fragment) n=1 Tax=Mesor... [more]
A0A6H5KRB3_9PHAE4.090e-577.50HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49160contigH-elongata_contig49160:552..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001120.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.7868218-CDS-H-elongata_contig49160:551..7101622930808.7868218-CDS-H-elongata_contig49160:551..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49160 552..710 +
1691679579.3993864-CDS-H-elongata_contig49160:551..7101691679579.3993864-CDS-H-elongata_contig49160:551..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49160 552..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49160.12096.1prot_H-elongata_contig49160.12096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49160 552..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49160.12096.1

>prot_H-elongata_contig49160.12096.1 ID=prot_H-elongata_contig49160.12096.1|Name=mRNA_H-elongata_contig49160.12096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGGMGGMGGMGGM
GM*
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mRNA from alignment at H-elongata_contig49160:552..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49160.12096.1 ID=mRNA_H-elongata_contig49160.12096.1|Name=mRNA_H-elongata_contig49160.12096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig49160:552..710+ (Himanthalia elongata Himel1 dioecious)
GTCCGCACAGCGCTGATAGACGCACAGAGCGTCGCGGCCCTGCTGATGAC
CGCTGAGGCGATGGTAACCGATCTGCCCGCCGACGAGTCAGCCCCACCCG
CCGGGCCGCCGATGGGAGGCATGGGCGGCATGGGAGGCATGGGAGGCATG
GGAATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49160:552..710+

>mRNA_H-elongata_contig49160.12096.1 ID=mRNA_H-elongata_contig49160.12096.1|Name=mRNA_H-elongata_contig49160.12096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig49160:552..710+ (Himanthalia elongata Himel1 dioecious)
GTCCGCACAGCGCTGATAGACGCACAGAGCGTCGCGGCCCTGCTGATGAC
CGCTGAGGCGATGGTAACCGATCTGCCCGCCGACGAGTCAGCCCCACCCG
CCGGGCCGCCGATGGGAGGCATGGGCGGCATGGGAGGCATGGGAGGCATG
GGAATGTAAGTCCGCACAGCGCTGATAGACGCACAGAGCGTCGCGGCCCT
GCTGATGACCGCTGAGGCGATGGTAACCGATCTGCCCGCCGACGAGTCAG
CCCCACCCGCCGGGCCGCCGATGGGAGGCATGGGCGGCATGGGAGGCATG
GGAGGCATGGGAATGTAA
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