prot_H-elongata_contig49160.12096.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49160.12096.1
Unique Nameprot_H-elongata_contig49160.12096.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
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BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Match: A0A3P3F368_9HYPH (Molecular chaperone GroEL (Fragment) n=1 Tax=Mesorhizobium tamadayense TaxID=425306 RepID=A0A3P3F368_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 1.500e-5
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:    1 VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGG 40
            VRTAL DA S+AALL+TAEAM+TD+PA ++AP  G  MGG
Sbjct:   64 VRTALQDAGSIAALLITAEAMITDIPAKDTAPSPGGGMGG 103
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BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.090e-5
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0 
Query:    1 VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGG 40
            VRTAL+DAQSVAALLMTAEAMV DLP +E AP +  PMGG
Sbjct:  525 VRTALVDAQSVAALLMTAEAMVADLP-EEEAPAS--PMGG 561
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49160.12096.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3P3F368_9HYPH1.500e-567.50Molecular chaperone GroEL (Fragment) n=1 Tax=Mesor... [more]
A0A6H5KRB3_9PHAE4.090e-577.50HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49160contigH-elongata_contig49160:552..710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49160.12096.1mRNA_H-elongata_contig49160.12096.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49160 552..710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49160.12096.1 ID=prot_H-elongata_contig49160.12096.1|Name=mRNA_H-elongata_contig49160.12096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VRTALIDAQSVAALLMTAEAMVTDLPADESAPPAGPPMGGMGGMGGMGGM
GM*
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