mRNA_H-elongata_contig49089.12088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49089.12088.1
Unique NamemRNA_H-elongata_contig49089.12088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.260e-30
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 3 
Query:  159 NAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFDHSE 395
            +AYF KNREKVSNLRS +LAL+L+HANVFAGCQ LVLDTCMGV TAAML+RM C+  + ALYAQSQPS DAV KFDH+E
Sbjct:  194 DAYFAKNREKVSNLRSDALALVLTHANVFAGCQALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAE 272
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A7S2FBR9_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBR9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 3 
Query:  165 YFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFDHSE 395
            YFLKN EKV+NLR  SLA +L+++NV+AGCQ LV DTCMGV  AA   R+     ++A +A  Q   DA+ +F+ SE
Sbjct:   38 YFLKNTEKVNNLRPDSLAQVLAYSNVYAGCQALVFDTCMGVVVAACADRLDGHGRILAAFAGQQHHFDAMKRFNFSE 114
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A5D6XMH0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMH0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.250e-10
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:   72 YLEHQEEVQLPATV---PTARPCCASHRPLHGNAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFD 386
            YL+ +++  +P       TA   C ++R        LKN  K  NLR  SL  +L +ANVFAG Q LV+DTCMG+   A+ +R A    ++A Y   QPS D + +F+
Sbjct:  153 YLKKKQQKYMPRVQFLKCTAESLCRTYR--------LKNPLKTCNLREDSLGQMLVYANVFAGAQVLVVDTCMGLVIGAIAERQAGHGRILAGYEGQQPSVDILRRFN 252
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BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A7S2DYA4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DYA4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.180e-10
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:  159 NAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAV 374
            + Y+ KNRE+VSNLRS SLA +L++ NVFAG   LV DT MG+  +++++R+     ++A YA  Q + DAV
Sbjct:  181 DTYYQKNRERVSNLRSDSLAQILAYGNVFAGGNVLVFDTVMGLVVSSVVERLGGHGRLLAAYAGKQAAFDAV 252
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A8J9SCJ2_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SCJ2_PHATR)

HSP 1 Score: 65.1 bits (157), Expect = 3.620e-10
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 
Query:  162 AYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPS-TDAVWKFD 386
            A ++K+ +K+ NLR  +LA +LS+ANV AGCQ+L+ +TC G+ T A+  RM     V++LY+  QPS T+ + +F+
Sbjct:  110 ALYVKDPKKIMNLREDTLAQILSYANVSAGCQSLIFETCFGLVTGAVACRMGGYGRVLSLYSGQQPSYTEMIQRFN 185
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A7R9YAG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAG0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.450e-10
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  165 YFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFDHS 392
            YF KN EKVSNLRS +LA +L++ NV +G Q L++DTCMG+ T A+++R+     +   Y     + DAV +F+ S
Sbjct:  170 YFEKNNEKVSNLRSDALAQVLAYGNVCSGQQILLIDTCMGLVTGAIMERLGGDGCIFHAYTGQAANLDAVQRFNFS 245
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.690e-10
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:   72 YLEHQEEVQLPATV---PTARPCCASHRPLHGNAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFD 386
            YL+ +++  +P       TA   C ++R        LKN  K+ NLR  SL  +L +AN+FAG Q LV+DTCMG+ T A+ +R      ++  Y   QP+ D + +F+
Sbjct:   92 YLKKKQQKYMPRVRFLRCTAESLCRTYR--------LKNPAKICNLREDSLGQMLVYANIFAGGQVLVVDTCMGLVTGAIAERQGGSGRILCPYDGQQPAADILRRFN 191
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A0P1AWZ4_PLAHL (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ4_PLAHL)

HSP 1 Score: 62.8 bits (151), Expect = 7.030e-9
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:   72 YLEHQEEVQLPATV---PTARPCCASHRPLHGNAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFD 386
            YL+ +++  +P       TA   C ++R        LKN  K+ N+R  SL  +L +AN+FAG Q LV+DTCMG+   A+ +R      +I  Y   QP+ D + +F+
Sbjct:  155 YLKKKQQKYMPRVRFLRCTAESLCRTYR--------LKNPMKICNMREDSLGQILVYANIFAGGQVLVVDTCMGLVAGAIAERQRGTGCIICPYEGQQPAADILRRFN 254
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A7S2K1Y7_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Y7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.600e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:  162 AYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQP 359
            A FLK++ ++ +LR  SLA +LS+ANV AG Q L+ DTC+G+   A+ +RM     +++LY   QP
Sbjct:  220 AMFLKDQRRIMSLRQDSLAQILSYANVHAGSQVLIFDTCLGLVCGALAQRMGGYGKILSLYTGQQP 285
[Close]
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: A0A0L0GBA9_9EUKA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GBA9_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 2.950e-7
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:   72 YLEHQEEVQLPATVPTARPCCASHRPLHGNAYFLKNREKVSNLRSHSLALLLSHANVFAGCQTLVLDTCMGVATAAMLKRMACREGVIALYAQSQPSTDAVWKFDHSE 395
            Y+  +++  L  T    RP      PL  +  +  N E++ N+RS SLA +L+ ANV AG + L+L++C G+ TA +L+R+      ++LY   +PS   V + +  E
Sbjct:  182 YIMKKQKRHLANTFSLRRPTL----PLLCDTTYQFNPERIQNIRSDSLAQVLTQANVHAGSRVLLLESCKGLVTAGVLERLGGYGECVSLYVGDKPSHPYVDQMNFDE 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LS75_ECTSI1.260e-3077.22tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2FBR9_9STRA1.000e-1451.95tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A5D6XMH0_9STRA1.250e-1037.96tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2DYA4_9STRA3.180e-1047.22tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A8J9SCJ2_PHATR3.620e-1043.42Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7R9YAG0_9STRA7.450e-1044.74tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A662WG54_9STRA7.690e-1035.19tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0P1AWZ4_PLAHL7.030e-934.26tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2K1Y7_9STRA4.600e-843.94tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0L0GBA9_9EUKA2.950e-732.41tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49089contigH-elongata_contig49089:1787..2205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D8LS75
Preferred nameTRMT6
KEGG rclassRC00017,RC02950
KEGG koko:K03256,ko:K08730
KEGG ReactionR07376
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0023052,GO:0030154,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0046483,GO:0048869,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG1416@1,KOG1416@2759
EC2.7.8.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size398
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49089.12088.1prot_H-elongata_contig49089.12088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49089 1799..2140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.7226121-UTR-H-elongata_contig49089:1786..17981622930807.7226121-UTR-H-elongata_contig49089:1786..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49089 1787..1798 +
1691679578.9519053-UTR-H-elongata_contig49089:1786..17981691679578.9519053-UTR-H-elongata_contig49089:1786..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49089 1787..1798 +
1622930807.776281-UTR-H-elongata_contig49089:2140..22051622930807.776281-UTR-H-elongata_contig49089:2140..2205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49089 2141..2205 +
1691679578.9852424-UTR-H-elongata_contig49089:2140..22051691679578.9852424-UTR-H-elongata_contig49089:2140..2205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49089 2141..2205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.7343519-CDS-H-elongata_contig49089:1798..18881622930807.7343519-CDS-H-elongata_contig49089:1798..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49089 1799..1888 +
1691679578.9651108-CDS-H-elongata_contig49089:1798..18881691679578.9651108-CDS-H-elongata_contig49089:1798..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49089 1799..1888 +
1622930807.759044-CDS-H-elongata_contig49089:1909..21401622930807.759044-CDS-H-elongata_contig49089:1909..2140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49089 1910..2140 +
1691679578.975143-CDS-H-elongata_contig49089:1909..21401691679578.975143-CDS-H-elongata_contig49089:1909..2140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49089 1910..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49089.12088.1

>prot_H-elongata_contig49089.12088.1 ID=prot_H-elongata_contig49089.12088.1|Name=mRNA_H-elongata_contig49089.12088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MKNDGKGGRMIIQALMDNSNTWSIKKKYSYQQQCRPRVRVVRVTDRSMAT
RIFSRIERKSAISGVTRSPSCSPTPTSSPAARRWCWTRAWASRQRRCLSA
WHAGKG*
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mRNA from alignment at H-elongata_contig49089:1787..2205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49089.12088.1 ID=mRNA_H-elongata_contig49089.12088.1|Name=mRNA_H-elongata_contig49089.12088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=419bp|location=Sequence derived from alignment at H-elongata_contig49089:1787..2205+ (Himanthalia elongata Himel1 dioecious)
GACACTCTTAAGATGAAGAACGACGGGAAGGGCGGCCGCATGATCATACA
GGCGTTGATGGACAATAGTAATACCTGGAGCATCAAGAAGAAGTACAGTT
ACGTGAAATGACTCAAGTGAAAGCAGCAACAGTGCCGACCGCGCGTCCGT
GTTGTGCGAGTCACCGACCGCTCCATGGCAACGCGTATTTTCTCAAGAAT
CGAGAGAAAGTCAGCAATCTCCGGAGTCACTCGCTCGCCCTCCTGCTCTC
CCACGCCAACGTCTTCGCCGGCTGCCAGACGCTGGTGCTGGACACGTGCA
TGGGCGTCGCGACAGCGGCGATGCTTAAGCGCATGGCATGCAGGGAAGGG
GTAATCGCCCTTTACGCGCAGAGCCAGCCCAGCACGGATGCGGTGTGGAA
GTTCGATCACTCCGAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig49089:1787..2205+

>mRNA_H-elongata_contig49089.12088.1 ID=mRNA_H-elongata_contig49089.12088.1|Name=mRNA_H-elongata_contig49089.12088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig49089:1787..2205+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAACGACGGGAAGGGCGGCCGCATGATCATACAGGCGTTGATGGA
CAATAGTAATACCTGGAGCATCAAGAAGAAGTACAGTTACATGAAGAACG
ACGGGAAGGGCGGCCGCATGATCATACAGGCGTTGATGGACAATAGTAAT
ACCTGGAGCATCAAGAAGAAGTACAGTTACCAGCAACAGTGCCGACCGCG
CGTCCGTGTTGTGCGAGTCACCGACCGCTCCATGGCAACGCGTATTTTCT
CAAGAATCGAGAGAAAGTCAGCAATCTCCGGAGTCACTCGCTCGCCCTCC
TGCTCTCCCACGCCAACGTCTTCGCCGGCTGCCAGACGCTGGTGCTGGAC
ACGTGCATGGGCGTCGCGACAGCGGCGATGCTTAAGCGCATGGCATGCAG
GGAAGGGGTAACAGCAACAGTGCCGACCGCGCGTCCGTGTTGTGCGAGTC
ACCGACCGCTCCATGGCAACGCGTATTTTCTCAAGAATCGAGAGAAAGTC
AGCAATCTCCGGAGTCACTCGCTCGCCCTCCTGCTCTCCCACGCCAACGT
CTTCGCCGGCTGCCAGACGCTGGTGCTGGACACGTGCATGGGCGTCGCGA
CAGCGGCGATGCTTAAGCGCATGGCATGCAGGGAAGGGGTAA
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