prot_H-elongata_contig49089.12088.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49089.12088.1
Unique Nameprot_H-elongata_contig49089.12088.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
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BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.350e-11
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0 
Query:    1 MKNDGKGGRMIIQALMDNSNTWSIKKKYSY-------QQQCRPRVRVVRVTDRSMATRIFSRIERK 59
            MKN+GKGGR IIQALMDNS+TW  K +YS        QQ+ RPRVRVVRVT R+M    F++   K
Sbjct:  138 MKNEGKGGRAIIQALMDNSDTWGNKTQYSQAKWLKRKQQKYRPRVRVVRVTGRTMCDAYFAKNREK 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49089.12088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS75_ECTSI5.350e-1157.58tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49089contigH-elongata_contig49089:1799..2140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49089.12088.1mRNA_H-elongata_contig49089.12088.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49089 1787..2205 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49089.12088.1 ID=prot_H-elongata_contig49089.12088.1|Name=mRNA_H-elongata_contig49089.12088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MKNDGKGGRMIIQALMDNSNTWSIKKKYSYQQQCRPRVRVVRVTDRSMAT
RIFSRIERKSAISGVTRSPSCSPTPTSSPAARRWCWTRAWASRQRRCLSA
WHAGKG*
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