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Homology
BLAST of mRNA_H-elongata_contig49051.12081.1 vs. uniprot
Match: D8LHC6_ECTSI (Allergen V5/Tpx-1 related n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC6_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.470e-48 Identity = 164/320 (51.25%), Postives = 181/320 (56.56%), Query Frame = 1
Query: 1 SRRFVDDMERRKAVNQLRGNR-SNASSPAGSTCHSPAAAALSRGVNSSRTGLGGGSPVKT--PTSPL---FSTLERXXXXXXXXXXXA-----------LTAN--HPLSPKRSTTGTLGWGTPPRSLARSID--QTDPASXXXXXXXXXXXXXXXXXXXXASTIGQAVPGRGYETGVPSKSDRTEEGQEDEK-----VGGGTPETVLAEINELRADPMAYATKLEGLLQHYDKTMYNSPTGPPVQTTEGTLPLLEAIEVLKATPPLXXXXXXXGMQQAAADHVKDLATTSRXXXXXXXXXXAADRMNRYGQFFQVSACVC 882
S RF+DD++RR AVNQLRG + SN SSPAGS +P SRG+ S G GSPV++ P S FSTLER XXX LT N HPLSP R + G P A + Q+ P XXXXXXXXXXXXXXXXXXXX + GV + VGGGTPETVLAEINELRADP YATKLE L + YDK MY SPTGPPVQTTEG PLLE + +LK T L GMQQAAADHVKDLA TSR AADRMNRYGQFFQV+ VC
Sbjct: 762 SNRFIDDLDRRNAVNQLRGGKLSNVSSPAGSANTTPRGT-NSRGITHSGAG---GSPVRSRSPASRFPSGFSTLERNLEREGGGXXXXXXXXXXXXGGPLTPNAKHPLSPNRPPSSATTAGLSPADSASIAELLQSSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGVMTPXXXXXXXXXXXXXXXXXVGGGTPETVLAEINELRADPKGYATKLEALEEFYDKGMYQSPTGPPVQTTEGVKPLLEVVAMLKTTEALAPLESKEGMQQAAADHVKDLAETSRTGHSGSDGSGAADRMNRYGQFFQVAGEVC 1077
BLAST of mRNA_H-elongata_contig49051.12081.1 vs. uniprot
Match: A0A2W4UNP3_9CYAN (CAP domain-containing protein n=1 Tax=Leptolyngbya foveolarum TaxID=47253 RepID=A0A2W4UNP3_9CYAN) HSP 1 Score: 72.4 bits (176), Expect = 4.340e-11 Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 532 ETVLAEINELRADPMAYATKLEGLLQHYDKTMYNSPTGPPVQTTEGTLPLLEAIEVLKATPPLXXXXXXXGMQQAAADHVKDLATTSRXXXXXXXXXXAADRMNRYGQF 858
E ++AE N++RA+P AYA +LE + +Y+ + P P VQ EG L EAI VL+ +PPL GM A DH DL + R+NRYGQ+
Sbjct: 92 EELIAETNKMRANPAAYAQRLEAIRDYYEGNLVKVPGRPAVQVVEGVGALDEAIAVLRGSPPLGALAFSPGMSFGANDHAADLGSKGITGHFGSDGSDPFARINRYGQW 200
BLAST of mRNA_H-elongata_contig49051.12081.1 vs. uniprot
Match: A0A6P1AK26_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AK26_9CYAN) HSP 1 Score: 60.5 bits (145), Expect = 1.050e-6 Identity = 37/106 (34.91%), Postives = 51/106 (48.11%), Query Frame = 1
Query: 538 VLAEINELRADPMAYATKLEGLLQHYDKTMYNSPTGPPVQTTEGTLPLLEAIEVLKATPPLXXXXXXXGMQQAAADHVKDLATTSRXXXXXXXXXXAADRMNRYGQ 855
++ E+N+ RA+P AYA KLE L +Y+ + + P P+ T EG + EAI L+ PL GM QAA D V+ DR+ RYGQ
Sbjct: 99 IVEEMNKARANPNAYADKLEALKPYYEGNLLSLPGKTPLVTEEGLAAVEEAIAFLRDAEPLPPLNVSRGMSQAARDLVQYQGPRGETGHSGRDGSQTWDRIGRYGQ 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 175.3 |
| Seed ortholog evalue | 4.2e-41 |
| Seed eggNOG ortholog | 2880.D8LHC6 |
| KEGG ko | ko:K10366 |
| KEGG Pathway | ko05410,ko05412,ko05414,ko05416,map05410,map05412,map05414,map05416 |
| GOs | GO:0000910,GO:0000912,GO:0000915,GO:0005575,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0007349,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016043,GO:0019898,GO:0022402,GO:0022607,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0032501,GO:0032502,GO:0032506,GO:0044085,GO:0044425,GO:0044837,GO:0048646,GO:0048856,GO:0051301,GO:0061640,GO:0071840 |
| EggNOG free text desc. | olfactory nerve structural organization |
| EggNOG OGs | COG5069@1,KOG4286@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 882 |
| Cds size | 861 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930806.9487007-UTR-H-elongata_contig49051:173..194 | 1622930806.9487007-UTR-H-elongata_contig49051:173..194 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49051 174..194 + |
| 1691679578.5231175-UTR-H-elongata_contig49051:173..194 | 1691679578.5231175-UTR-H-elongata_contig49051:173..194 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig49051 174..194 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930806.9781349-CDS-H-elongata_contig49051:194..313 | 1622930806.9781349-CDS-H-elongata_contig49051:194..313 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 195..313 + |
| 1691679578.5361545-CDS-H-elongata_contig49051:194..313 | 1691679578.5361545-CDS-H-elongata_contig49051:194..313 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 195..313 + |
| 1622930807.008297-CDS-H-elongata_contig49051:826..976 | 1622930807.008297-CDS-H-elongata_contig49051:826..976 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 827..976 + |
| 1691679578.5521252-CDS-H-elongata_contig49051:826..976 | 1691679578.5521252-CDS-H-elongata_contig49051:826..976 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 827..976 + |
| 1622930807.0274034-CDS-H-elongata_contig49051:1505..1778 | 1622930807.0274034-CDS-H-elongata_contig49051:1505..1778 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 1506..1778 + |
| 1691679578.565327-CDS-H-elongata_contig49051:1505..1778 | 1691679578.565327-CDS-H-elongata_contig49051:1505..1778 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 1506..1778 + |
| 1622930807.0464678-CDS-H-elongata_contig49051:2611..2691 | 1622930807.0464678-CDS-H-elongata_contig49051:2611..2691 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 2612..2691 + |
| 1691679578.5761087-CDS-H-elongata_contig49051:2611..2691 | 1691679578.5761087-CDS-H-elongata_contig49051:2611..2691 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 2612..2691 + |
| 1622930807.064908-CDS-H-elongata_contig49051:3520..3650 | 1622930807.064908-CDS-H-elongata_contig49051:3520..3650 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 3521..3650 + |
| 1691679578.5862262-CDS-H-elongata_contig49051:3520..3650 | 1691679578.5862262-CDS-H-elongata_contig49051:3520..3650 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 3521..3650 + |
| 1622930807.0834677-CDS-H-elongata_contig49051:4026..4135 | 1622930807.0834677-CDS-H-elongata_contig49051:4026..4135 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 4027..4135 + |
| 1691679578.5975606-CDS-H-elongata_contig49051:4026..4135 | 1691679578.5975606-CDS-H-elongata_contig49051:4026..4135 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig49051 4027..4135 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49051.12081.1 >prot_H-elongata_contig49051.12081.1 ID=prot_H-elongata_contig49051.12081.1|Name=mRNA_H-elongata_contig49051.12081.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MERRKAVNQLRGNRSNASSPAGSTCHSPAAAALSRGVNSSRTGLGGGSPV KTPTSPLFSTLERSSSGLGGTSPAALTANHPLSPKRSTTGTLGWGTPPRS LARSIDQTDPASPGSSVPELPPAPSAAMAAFAASTIGQAVPGRGYETGVP SKSDRTEEGQEDEKVGGGTPETVLAEINELRADPMAYATKLEGLLQHYDK TMYNSPTGPPVQTTEGTLPLLEAIEVLKATPPLEPLESKEGMQQAAADHV KDLATTSRTGHSGSDGSGAADRMNRYGQFFQVSACVC back to topmRNA from alignment at H-elongata_contig49051:174..4135+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig49051.12081.1 ID=mRNA_H-elongata_contig49051.12081.1|Name=mRNA_H-elongata_contig49051.12081.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3962bp|location=Sequence derived from alignment at H-elongata_contig49051:174..4135+ (Himanthalia elongata Himel1 dioecious) TCCCGAAGGTTCGTGGACGATATGGAACGACGCAAAGCTGTCAACCAGCT
AAGGGGTAATCGGTCCAACGCTTCCTCCCCGGCAGGATCGACGTGCCACT
CTCCTGCGGCAGCAGCCTTGTCTCGAGGCGTCAACAGTAGGTACGCGCTG
CTGTGGAGTAGAGTAGAACAGATAACATAGAGCATGTGGAGTGGTGGATT
CCGGCTGATTTTTTTTCGACATCGATTTGGAGATGTCGTATGCCGAATGA
GATGATAATCGTACCGCCTCCGTATCATATCGAATTGTACCGTTTCGTAT
CACTCAAAGGAACCCTGTGGGGTGTAGTATCGAACCGTCTCGTTATCTTT
GTTAATATATATATATATATAATATTCCAACCCTCCGAGCATCCACCCCT
TCTCAGCACCGTGAGAGGTGCATTCCAGGGGACCAACTATCGTCAGGTTC
GAACGTGGACGTTACTACTACTACCGTTGAGCACAAAATCGTTACACGTG
ATTGGTCAATCGTGTTCCTCGCTATTATAATAGAAAAGTCATCTATCGTT
TGAAAGGATTAAGCACCGTGTGTGGTGCCGTACCATATCGCAACGTTTTG
TTTCGTTTCATTTCGTTTTGTTTTGTTCGTTTATGTTACGGTTCGCGCGT
CAGTCGTACGGGGTTAGGAGGGGGCAGTCCCGTAAAGACACCCACGTCTC
CGCTGTTCAGCACTCTCGAGCGCTCGTCGTCGGGGTTAGGGGGCACTTCT
CCTGCTGCTCTCACGGCGAATCACCCGCTTTCGCCCAAACGATCGACGAC
TGGGTGCGTAATGGTGGCAAGCATCATCACCCATCGCGGTACCTAGGTTT
ATTGTTCGTGTTGTGTGCATGTGTGCATGTGTGTGTTCAGAGGAAAGAGG
ATGGGGGAGGGGGTTAATTGAGTTCAGCGGTGGGTCTTAGGGTTCGGTTG
ATTCCCGCGACGGCTGTGTGACGGACCTGGTCGTTAGAGGCACGCGGGAG
TGTAGGATATGATGGTTTGTTTTCCGGTCGGGGCCTTTCGAAGAAACGGT
TATCAGTCCTGTGGTATATGGTATATGGGATGGGGATGAGGATGGGGCAC
GGTGTTGTTTTGTTGTGTACGCGTTACTACTGAAACGCTGTCGATATCTC
TGTTATCCTATATCTTTCTTCAGTGGTCGAAAGAGTCGAAAAATATCGCA
ATTTTGCGTCTTTCTTTATTTTCACTTGCCCCCCTCCCCTCCCCCCCCCC
CCTCCTCCCACGCCGTGACGCCTCCGACCTATCTTGACAACATTTTTTTC
CGACCAAAAAATCAATAAAAACTGCGCATCAGCACGCTGGGATGGGGCAC
GCCTCCGAGATCCCTGGCGAGGTCCATCGATCAAACCGATCCAGCCTCGC
CGGGCTCCAGCGTGCCTGAGCTTCCGCCCGCCCCGTCCGCCGCAATGGCC
GCGTTTGCTGCCAGCACCATTGGTCAAGCGGTGCCGGGAAGGGGATATGA
GACAGGCGTCCCCTCTAAGAGTGACCGTACGGAGGAGGGGCAGGAGGATG
AGAAGGTTGGGGGAGGTACACCAGAGACGGTCCTCGCCGAAATCAACGAG
CTCCGGTGGGTGTTTTATCGTTGAAGGCGTTTTTTTGTGGTGCACGGGGT
GTGTTTTAAGTACGAGGCGGGGCTGAACGAGCGACGAGACGCGTGAGCCG
TTTCCATGAGCGCTCTGTGCCATTTCCCCTACACAAACACACACACATAT
TGGAAGGATCAATGCGAGAGTAATCTAAAAGGACTAAAATAGCACGACGG
CCGGATTGCCTTAGCGGTTGTGTGAAATTTAATAAACACACACACAGACG
CAGGAGTGTTGATTTAGGGTACCCCCAGTAATAGGGATCGTGTCTGTGGG
TAACTGGCCCCGTCGAGAGCGCGGAAGATCTTACGGGTGGTGACTCGCGT
GCCCTTCCGAGCGGTCTTGGTTGTCTTCTGGAAGGTCACAAGAAACGCTC
TCTTCTTGTTGCAGACGCGTACCCAAAGACGAGCCACCTTTGCTGAATGA
AATGGGTCAAGACATGCCATACACGCCCCGTCGCGTCCTCCCCCTCCTCG
TTGGAGGGGAAATGAGAGAGTTGTAGAGGGGGTAACAGTTATCAAGGCAG
CCCCTGCCGGGGGGTGAATTAGCTACATCCCCCTAGCATTGGGTTTGGTT
GAGTTCGGAACAGAAGCCAGCACACATGTCGGGTATGATGACGTAGTGGG
TGACCCCCGTGTTATACCCCGAAGGGACTGTTTTGAGAATGTTCCCCCTT
GAACTCAGGGAGAGACTATTTACTATTTACTATTTACCCCTCGTTCGTTT
TCCCGCGCCCCGAAGCAGACATGCACGCATGCCTCCGTCAACCCCCCTTT
TTTTTTCTACCACCTTGCTAACTGGATCCGTACATCAGGGCAGACCCAAT
GGCTTACGCGACGAAGCTGGAGGGTCTTCTGCAGCACTACGACAAGACTA
TGTACAATTCACCGACAGGTGAATAACAAGAAACACAGAAAGAAAGAAAG
AAAAACAAAATAGAATAAAAAAAACAAACATTTTTTCGGGTACTGTAGTA
GCTGTGACTAAGGGGTCGTTGTCGGACACTCGCACGCACATGTAGCTCTA
GCATCGTACCACTCTGGTCCGAAATATAAGAAGCGTTTAGGAGAAAATGT
TAATATCTAAACGGTACTTATATTTCGGACCATAGTGGACGATCAACCCT
GCTTTTGGTTCACACCATGAGTGGGATCCGACAAATAAATGCGTAGTTGA
CCAAAACTAATACCAATAACTGACTCTTGCATCAGTGTGTTGTGTGTATG
GTGTGTGTGTGTGTTTTTGCGTGCATATTTAATAAATTGCACATAACCGC
TAAGGCAATCCGGCCCTCTAGGCTACTTTCGCAATGATAGATCCTCCAAT
GATCCGCATAATATGGGGGATCAATGTGTGTATGTATGTGTGTGATATTT
CTCCCCTCTTCCCTTGGTTGATACATGCTGTAATATAGAAGTGTTCGGTT
CGGTTCAGCTTTCCCATCCCGAGCGTTGCCCCGCTCAGGTGTAGAAAGGA
CTCTCGTGTAGGGGAGGGACGCCTCGTCCTCTCTAGGCAAACCCCATTCT
AAACCTGAAGCAACGTCGGTCGCACAGACAATCGGCGTGTATGTGTATGT
ATGTACCGGTATGTAAATATGTATGTTTATATAGGCTTTGCGGGGAAGAG
GGGGTTTTCATTAAAGCGCAGTAGGCATCTGTGCGCTCGTACCTAATGCG
TTTTGCGGGGCTCCGGGCATGGGGGTCCGGTGTGGTGGTGATTGCAGGTC
CCCCGGTGCAGACGACGGAGGGCACATTGCCTCTGCTGGAGGCGATCGAG
GTGCTCAAGGCCACGCCGCCTCTCGAGCCGCTTGAGAGCAAGGAGGGCAT
GCAGCAGGCGGCTGCGGACCATGTCAAGTGAGGGCTGAGTCAGGCTTATC
AGAGGGTTGTGTCGCATGAGATGGCAAAAAAGACAAGGGGGGTGATAGGG
ATTTATTTTTCTTTCTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTAGT
TTGTATATTCTTCCCTTTTCTCATTCTCTATCTTGTTATGTAGTCTATAT
ATTTATTTTCCTCTTTGTTATCTATATATTTATTTTCCATTCTGCTATGG
ATTCGCCCGTCTCAGTCACCACCGTGCCAAACAGCACTTAGTCTTCCGTT
GCGGCGCAGAATAGTCTCACGTTTCTTCTCCCCCCTCTTAAACATAAAAA
AAAAATGTTCTACCTTGTTTCGCCATCGACCCTCGTCTCAAAACCACCTC
AAGAGACCTGGCAACGACGAGCAGAACCGGCCACTCCGGCTCGGACGGGA
GCGGAGCCGCCGACCGCATGAATCGCTACGGCCAATTTTTCCAGGTATCT
GCGTGTGTGTGT back to topCoding sequence (CDS) from alignment at H-elongata_contig49051:174..4135+ >mRNA_H-elongata_contig49051.12081.1 ID=mRNA_H-elongata_contig49051.12081.1|Name=mRNA_H-elongata_contig49051.12081.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig49051:174..4135+ (Himanthalia elongata Himel1 dioecious) ATGGAACGACGCAAAGCTGTCAACCAGCTAAGGGGTAATCGGTCCAACGC TTCCTCCCCGGCAGGATCGACGTGCCACTCTCCTGCGGCAGCAGCCTTGT CTCGAGGCGTCAACAGTAGATGGAACGACGCAAAGCTGTCAACCAGCTAA GGGGTAATCGGTCCAACGCTTCCTCCCCGGCAGGATCGACGTGCCACTCT CCTGCGGCAGCAGCCTTGTCTCGAGGCGTCAACAGTAGTCGTACGGGGTT AGGAGGGGGCAGTCCCGTAAAGACACCCACGTCTCCGCTGTTCAGCACTC TCGAGCGCTCGTCGTCGGGGTTAGGGGGCACTTCTCCTGCTGCTCTCACG GCGAATCACCCGCTTTCGCCCAAACGATCGACGACTGGTCGTACGGGGTT AGGAGGGGGCAGTCCCGTAAAGACACCCACGTCTCCGCTGTTCAGCACTC TCGAGCGCTCGTCGTCGGGGTTAGGGGGCACTTCTCCTGCTGCTCTCACG GCGAATCACCCGCTTTCGCCCAAACGATCGACGACTGGCACGCTGGGATG GGGCACGCCTCCGAGATCCCTGGCGAGGTCCATCGATCAAACCGATCCAG CCTCGCCGGGCTCCAGCGTGCCTGAGCTTCCGCCCGCCCCGTCCGCCGCA ATGGCCGCGTTTGCTGCCAGCACCATTGGTCAAGCGGTGCCGGGAAGGGG ATATGAGACAGGCGTCCCCTCTAAGAGTGACCGTACGGAGGAGGGGCAGG AGGATGAGAAGGTTGGGGGAGGTACACCAGAGACGGTCCTCGCCGAAATC AACGAGCTCCGCACGCTGGGATGGGGCACGCCTCCGAGATCCCTGGCGAG GTCCATCGATCAAACCGATCCAGCCTCGCCGGGCTCCAGCGTGCCTGAGC TTCCGCCCGCCCCGTCCGCCGCAATGGCCGCGTTTGCTGCCAGCACCATT GGTCAAGCGGTGCCGGGAAGGGGATATGAGACAGGCGTCCCCTCTAAGAG TGACCGTACGGAGGAGGGGCAGGAGGATGAGAAGGTTGGGGGAGGTACAC CAGAGACGGTCCTCGCCGAAATCAACGAGCTCCGGGCAGACCCAATGGCT TACGCGACGAAGCTGGAGGGTCTTCTGCAGCACTACGACAAGACTATGTA CAATTCACCGACAGGGCAGACCCAATGGCTTACGCGACGAAGCTGGAGGG TCTTCTGCAGCACTACGACAAGACTATGTACAATTCACCGACAGGTCCCC CGGTGCAGACGACGGAGGGCACATTGCCTCTGCTGGAGGCGATCGAGGTG CTCAAGGCCACGCCGCCTCTCGAGCCGCTTGAGAGCAAGGAGGGCATGCA GCAGGCGGCTGCGGACCATGTCAAGTCCCCCGGTGCAGACGACGGAGGGC ACATTGCCTCTGCTGGAGGCGATCGAGGTGCTCAAGGCCACGCCGCCTCT CGAGCCGCTTGAGAGCAAGGAGGGCATGCAGCAGGCGGCTGCGGACCATG TCAAAGACCTGGCAACGACGAGCAGAACCGGCCACTCCGGCTCGGACGGG AGCGGAGCCGCCGACCGCATGAATCGCTACGGCCAATTTTTCCAGGTATC TGCGTGTGTGTGTAGACCTGGCAACGACGAGCAGAACCGGCCACTCCGGC TCGGACGGGAGCGGAGCCGCCGACCGCATGAATCGCTACGGCCAATTTTT CCAGGTATCTGCGTGTGTGTGT back to top
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