mRNA_H-elongata_contig49021.12079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49021.12079.1
Unique NamemRNA_H-elongata_contig49021.12079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: A0A6H5JJD6_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJD6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.010e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 ISFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSP 222
            +  +S  +  AV+ GDV+ VR +LE+GVD N+++P TGRTLLH ACRQG   + SLLLS GANPGA T+R L+P
Sbjct:    3 LKLNSDAVRHAVKDGDVDAVREYLESGVDANLANPNTGRTLLHIACRQGYPAMASLLLSNGANPGATTLRQLTP 76
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: A0A423U6D9_PENVA (Uncharacterized protein n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423U6D9_PENVA)

HSP 1 Score: 67.0 bits (162), Expect = 6.590e-10
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    4 SFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSPL 225
            S S +++I AVR+ D   VRA L+ G D+++  P+ G TLLH A +   G+I+ +LLSRGA+  A T +  +PL
Sbjct:  202 SHSDKRLIAAVRRSDAEEVRAALDEGADLSLQGPEDGGTLLHLASQDSSGQILEMLLSRGASVDATTSQGFTPL 275
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI0018A70CB3 (ankyrin-3-like isoform X1 n=2 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A70CB3)

HSP 1 Score: 65.5 bits (158), Expect = 2.340e-9
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 SFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSPL 225
            S S + +I AVR+ D   VRA L  G D+++  P+ G TLLH A +   G+++ +LLSRGA+  AKT +  +PL
Sbjct:  202 SHSDKLLIVAVRRNDAAEVRAALNEGADLSVQGPEDGGTLLHLASQGSSGQVLQILLSRGASVDAKTSQGFTPL 275
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI0018A7CA30 (ankyrin-1-like isoform X1 n=2 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7CA30)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-8
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 SFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSPL 225
            S   + +I AVR+ D   VRA L+ G D+++  P+ G TLLH A +   G+++ +LLSRGA+  AKT +  +PL
Sbjct:  202 SHLDKLLIVAVRRNDAAEVRAALDEGADLSLQGPEDGGTLLHLASQGSSGQVLQILLSRGASVDAKTSQGFTPL 275
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: A0A0L1KW18_9EUGL (Ankyrin repeat containing protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KW18_9EUGL)

HSP 1 Score: 57.0 bits (136), Expect = 4.270e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 ISFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLL 171
            +S  +  + E+ RQGDV  +RAFLE+   +N   PKTG TLLH+AC     +IV LL
Sbjct:    5 VSMKNESLYESSRQGDVERIRAFLESSSALNEPDPKTGMTLLHYACHGEQAKIVELL 61
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI001FB6A518 (ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB6A518)

HSP 1 Score: 58.9 bits (141), Expect = 4.500e-7
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   22 IIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSP 222
            +I AVR+ D   V+A L+ G D+++  P+ G TLLH A +   G+++ +LLSRGA+  A+T +  +P
Sbjct:  208 LIVAVRRNDAAEVQAALDKGADLSLQGPEDGGTLLHLASQGSSGQVLQMLLSRGASVDARTSQGFTP 274
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI001FB85A89 (ankyrin-1-like isoform X1 n=3 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB85A89)

HSP 1 Score: 56.2 bits (134), Expect = 3.860e-6
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   22 IIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSP 222
            +I AVR+ D   VR  L+   D+++  P+ G TLLH A +   G+++ +LLSRGA+  A+T +  +P
Sbjct:  221 LIAAVRRNDAAEVRTALDKEADLSLQGPEDGGTLLHLASQGSSGQVLQMLLSRGASVDARTSQGFTP 287
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BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI0004198A13 (ankyrin repeat domain-containing protein n=1 Tax=Adhaeribacter aquaticus TaxID=299567 RepID=UPI0004198A13)

HSP 1 Score: 52.0 bits (123), Expect = 7.330e-6
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   25 IEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSPL 225
            IEAV+ G++  V++ L+   D+  +    G TLLH A ++G G+++ LLL RGA+  A T    SP+
Sbjct:    8 IEAVKSGNLEEVKSLLDNEPDIVNTKDNKGYTLLHLAAQEGNGDLIKLLLERGADINALTEDGQSPM 74
[Close]
BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: UPI0018643570 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018643570)

HSP 1 Score: 55.1 bits (131), Expect = 1.050e-5
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   52 NGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGANPGAKTMRDLSPL 225
            + VR  L++G  VN + P  GRTLL  A + G G++V LLLSRGA+PG    +  +PL
Sbjct:  498 DSVRLLLDSGASVNQADPADGRTLLAGAAQTGAGDVVELLLSRGADPGIGDHQGQTPL 555
[Close]
BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Match: A0A1Z8WY38_9BACT (Uncharacterized protein (Fragment) n=2 Tax=Verrucomicrobia TaxID=74201 RepID=A0A1Z8WY38_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.730e-5
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   34 VRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGCGEIVSLLLSRGA 186
            VR GD+ GV+A+L+AGVD+N +  + G T LH+A  +G  +IV LL++RGA
Sbjct:  159 VRDGDLAGVQAYLDAGVDIN-ARDENGSTPLHWAALEGHKDIVELLINRGA 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49021.12079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JJD6_9PHAE2.010e-1856.76RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A423U6D9_PENVA6.590e-1043.24Uncharacterized protein n=2 Tax=Penaeus vannamei T... [more]
UPI0018A70CB32.340e-943.24ankyrin-3-like isoform X1 n=2 Tax=Penaeus monodon ... [more]
UPI0018A7CA301.140e-841.89ankyrin-1-like isoform X1 n=2 Tax=Penaeus monodon ... [more]
A0A0L1KW18_9EUGL4.270e-747.37Ankyrin repeat containing protein n=1 Tax=Perkinse... [more]
UPI001FB6A5184.500e-740.30ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139... [more]
UPI001FB85A893.860e-638.81ankyrin-1-like isoform X1 n=3 Tax=Penaeus chinensi... [more]
UPI0004198A137.330e-638.81ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI00186435701.050e-546.55ankyrin repeat domain-containing protein 50-like n... [more]
A0A1Z8WY38_9BACT2.730e-550.98Uncharacterized protein (Fragment) n=2 Tax=Verruco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49021contigH-elongata_contig49021:3214..4047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D7FLD3
Preferred nameMYO16
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.7.11.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930806.6288939-CDS-H-elongata_contig49021:3213..33571622930806.6288939-CDS-H-elongata_contig49021:3213..3357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49021 3214..3357 +
1691679578.40993-CDS-H-elongata_contig49021:3213..33571691679578.40993-CDS-H-elongata_contig49021:3213..3357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49021 3214..3357 +
1622930806.6446667-CDS-H-elongata_contig49021:3687..40471622930806.6446667-CDS-H-elongata_contig49021:3687..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49021 3688..4047 +
1691679578.4195957-CDS-H-elongata_contig49021:3687..40471691679578.4195957-CDS-H-elongata_contig49021:3687..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49021 3688..4047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49021.12079.1prot_H-elongata_contig49021.12079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49021 3214..4047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49021.12079.1

>prot_H-elongata_contig49021.12079.1 ID=prot_H-elongata_contig49021.12079.1|Name=mRNA_H-elongata_contig49021.12079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
ISFSSRQIIEAVRQGDVNGVRAFLEAGVDVNISSPKTGRTLLHFACRQGC
GEIVSLLLSRGANPGAKTMRDLSPLHLACNQGHFKVSRLLLEAWAAVDEQ
DQAGTTPLHLSSQKGYSDIVRLLLQCGADRNGLDKSGWTPLHYAAWRGHA
EVARMLMQAGANAKVSNL
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mRNA from alignment at H-elongata_contig49021:3214..4047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49021.12079.1 ID=mRNA_H-elongata_contig49021.12079.1|Name=mRNA_H-elongata_contig49021.12079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig49021:3214..4047+ (Himanthalia elongata Himel1 dioecious)
ATTTCATTTTCCTCACGGCAGATAATTGAAGCTGTTCGTCAAGGAGACGT
GAACGGCGTGCGTGCATTCCTGGAAGCCGGTGTCGACGTCAACATATCTA
GCCCGAAAACTGGAAGAACGCTGCTGCATTTCGCTTGCCGTCAAGTAAGT
GATTCAATATAATTAGGCTCATTCTAACTCTCCTCTTTCTCCCTTCTATC
TCTTGTTGAGCGAGTTGGTCTCCCTCTGCGACGTTAAAGCTGCGTTCCNN
NNNNNNNNCGAACATCCACACCTTTTTGTCAACGTAAGTGCAATCCAGGG
GACCAACTATCAGAAACCAGGAATTTTGCTTGACATTCATATGGCGTGTA
TCGTCTATTGTACTCAACTATATACCCGACTTTGTCTGCCCTTTACGGAC
ATGCTCATGGAAGACAAGATTGTGCCTACCCGCTTGTTGCAACTCATCTG
TATAATCAAAACGCTGGGTACCAGGGATGTGGGGAGATTGTTTCACTGCT
TTTATCAAGGGGTGCCAATCCTGGGGCGAAGACGATGCGTGACCTGTCGC
CACTGCACCTTGCATGCAATCAAGGACACTTCAAAGTGTCTCGTCTTTTG
CTTGAGGCTTGGGCGGCTGTGGACGAGCAGGATCAAGCAGGGACAACTCC
TCTACATCTTTCTTCGCAAAAGGGATACTCCGATATCGTTCGGTTGTTAT
TACAGTGTGGTGCCGATAGAAACGGGCTGGATAAAAGTGGTTGGACACCG
CTCCATTACGCCGCGTGGAGGGGGCATGCTGAGGTGGCACGAATGTTGAT
GCAGGCGGGAGCGAACGCAAAGGTGAGTAACTTG
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Coding sequence (CDS) from alignment at H-elongata_contig49021:3214..4047+

>mRNA_H-elongata_contig49021.12079.1 ID=mRNA_H-elongata_contig49021.12079.1|Name=mRNA_H-elongata_contig49021.12079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig49021:3214..4047+ (Himanthalia elongata Himel1 dioecious)
ATTTCATTTTCCTCACGGCAGATAATTGAAGCTGTTCGTCAAGGAGACGT
GAACGGCGTGCGTGCATTCCTGGAAGCCGGTGTCGACGTCAACATATCTA
GCCCGAAAACTGGAAGAACGCTGCTGCATTTCGCTTGCCGTCAAATTTCA
TTTTCCTCACGGCAGATAATTGAAGCTGTTCGTCAAGGAGACGTGAACGG
CGTGCGTGCATTCCTGGAAGCCGGTGTCGACGTCAACATATCTAGCCCGA
AAACTGGAAGAACGCTGCTGCATTTCGCTTGCCGTCAAGGATGTGGGGAG
ATTGTTTCACTGCTTTTATCAAGGGGTGCCAATCCTGGGGCGAAGACGAT
GCGTGACCTGTCGCCACTGCACCTTGCATGCAATCAAGGACACTTCAAAG
TGTCTCGTCTTTTGCTTGAGGCTTGGGCGGCTGTGGACGAGCAGGATCAA
GCAGGGACAACTCCTCTACATCTTTCTTCGCAAAAGGGATACTCCGATAT
CGTTCGGTTGTTATTACAGTGTGGTGCCGATAGAAACGGGCTGGATAAAA
GTGGTTGGACACCGCTCCATTACGCCGCGTGGAGGGGGCATGCTGAGGTG
GCACGAATGTTGATGCAGGCGGGAGCGAACGCAAAGGTGAGTAACTTGGG
ATGTGGGGAGATTGTTTCACTGCTTTTATCAAGGGGTGCCAATCCTGGGG
CGAAGACGATGCGTGACCTGTCGCCACTGCACCTTGCATGCAATCAAGGA
CACTTCAAAGTGTCTCGTCTTTTGCTTGAGGCTTGGGCGGCTGTGGACGA
GCAGGATCAAGCAGGGACAACTCCTCTACATCTTTCTTCGCAAAAGGGAT
ACTCCGATATCGTTCGGTTGTTATTACAGTGTGGTGCCGATAGAAACGGG
CTGGATAAAAGTGGTTGGACACCGCTCCATTACGCCGCGTGGAGGGGGCA
TGCTGAGGTGGCACGAATGTTGATGCAGGCGGGAGCGAACGCAAAGGTGA
GTAACTTG
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