mRNA_H-elongata_contig48965.12066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48965.12066.1
Unique NamemRNA_H-elongata_contig48965.12066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48965.12066.1 vs. uniprot
Match: D7FPT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-12
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 DVRASPRWENLWSEGIRKGDKWDAGVVSPALQNLLDSG 126
            +VRASP WE  WS GI KGD+WD GVVSPALQ LLD G
Sbjct:    8 EVRASPAWEGYWSGGISKGDQWDTGVVSPALQKLLDEG 45
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BLAST of mRNA_H-elongata_contig48965.12066.1 vs. uniprot
Match: A0A836CD04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD04_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.670e-8
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 TARDVRASPRWENLWSEGIRKGDKWDAGVVSPALQNLLDS 123
            T +  +  PRWEN+W+ G++KGD +D G VSPALQ LLD+
Sbjct:    9 TPQQEQGHPRWENIWAAGLKKGDAFDTGRVSPALQQLLDA 48
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BLAST of mRNA_H-elongata_contig48965.12066.1 vs. uniprot
Match: A0A250X9Y7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X9Y7_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 3.400e-7
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   25 SPRWENLWSEGIRKGDKWDAGVVSPALQNLLDSGEFY 135
            S RWE +WS+GI KG  +DAG  SPAL+NLL SG+ +
Sbjct:   20 SSRWEAMWSQGIVKGQAFDAGASSPALKNLLSSGKMH 56
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BLAST of mRNA_H-elongata_contig48965.12066.1 vs. uniprot
Match: A0A835VYK9_9CHLO (Uncharacterized protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835VYK9_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 6.530e-5
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   25 SPRWENLWSEGIRKGDKWDAGVVSPALQNLLDSGE 129
            S RWE+ WS G+ KG +WD    SP+L +LL SG+
Sbjct:   33 SDRWEDEWSAGVGKGQRWDCAAPSPSLVDLLKSGK 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48965.12066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPT2_ECTSI2.210e-1273.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CD04_9STRA1.670e-855.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A250X9Y7_9CHLO3.400e-759.46Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A835VYK9_9CHLO6.530e-551.43Uncharacterized protein n=2 Tax=Chlamydomonas schl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48965contigH-elongata_contig48965:3988..4122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D7FPT2
KEGG koko:K21552
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008757,GO:0009056,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016020,GO:0016143,GO:0016145,GO:0016740,GO:0016741,GO:0018708,GO:0019748,GO:0019757,GO:0019759,GO:0019760,GO:0019762,GO:0031967,GO:0031975,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658
EggNOG free text desc.Thiol methyltransferase
EggNOG OGs28JNP@1,2QS1V@2759
EC2.1.1.165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-18_001620.1
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.2025278-CDS-H-elongata_contig48965:3987..41221622930805.2025278-CDS-H-elongata_contig48965:3987..4122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48965 3988..4122 +
1691679577.8284082-CDS-H-elongata_contig48965:3987..41221691679577.8284082-CDS-H-elongata_contig48965:3987..4122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48965 3988..4122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48965.12066.1prot_H-elongata_contig48965.12066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48965 3988..4122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48965.12066.1

>prot_H-elongata_contig48965.12066.1 ID=prot_H-elongata_contig48965.12066.1|Name=mRNA_H-elongata_contig48965.12066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MTARDVRASPRWENLWSEGIRKGDKWDAGVVSPALQNLLDSGEFY
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mRNA from alignment at H-elongata_contig48965:3988..4122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48965.12066.1 ID=mRNA_H-elongata_contig48965.12066.1|Name=mRNA_H-elongata_contig48965.12066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig48965:3988..4122+ (Himanthalia elongata Himel1 dioecious)
ATGACTGCGAGGGATGTACGGGCGTCGCCAAGGTGGGAGAACCTTTGGTC
TGAAGGTATTAGAAAAGGCGACAAGTGGGATGCGGGGGTCGTGTCTCCGG
CTCTGCAGAATCTTCTAGATTCCGGTGAGTTTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig48965:3988..4122+

>mRNA_H-elongata_contig48965.12066.1 ID=mRNA_H-elongata_contig48965.12066.1|Name=mRNA_H-elongata_contig48965.12066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig48965:3988..4122+ (Himanthalia elongata Himel1 dioecious)
ATGACTGCGAGGGATGTACGGGCGTCGCCAAGGTGGGAGAACCTTTGGTC
TGAAGGTATTAGAAAAGGCGACAAGTGGGATGCGGGGGTCGTGTCTCCGG
CTCTGCAGAATCTTCTAGATTCCGGTGAGTTTTACATGACTGCGAGGGAT
GTACGGGCGTCGCCAAGGTGGGAGAACCTTTGGTCTGAAGGTATTAGAAA
AGGCGACAAGTGGGATGCGGGGGTCGTGTCTCCGGCTCTGCAGAATCTTC
TAGATTCCGGTGAGTTTTAC
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