mRNA_H-elongata_contig48907.12060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48907.12060.1
Unique NamemRNA_H-elongata_contig48907.12060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: A0A6H5L7D8_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7D8_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.010e-52
Identity = 81/98 (82.65%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    1 SRVVAQNSPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPVGSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            S V++QNSPSMRRIM+EWKQVQA+G AMG+G  S++GNSS+TFRLKPVG+MFEWHFTFLGAKDSPFEGGLYHGSI+LP +YPQSGPSVRLLNTN RFK
Sbjct:   31 SHVLSQNSPSMRRIMSEWKQVQADGLAMGQGHWSSKGNSSETFRLKPVGNMFEWHFTFLGAKDSPFEGGLYHGSISLPENYPQSGPSVRLLNTNMRFK 128
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: W7TJJ9_9STRA (Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJJ9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.160e-17
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   28 SMRRIMNEWKQVQAEGQAM---GEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            S RR++ EW+ + AEG  +   GEG CS   N+++  RL P  G++ EWHF+  G   S +EGG+YHG + LP +YPQ+ P +++LN + RF+
Sbjct:   53 SYRRLIKEWRGIMAEGLVLMDSGEGNCSLS-NNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFE 144
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: F6T7J7_CIOIN (Ubiquitin-conjugating enzyme E2 J1-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6T7J7_CIOIN)

HSP 1 Score: 82.0 bits (201), Expect = 1.830e-16
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPVG-SMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            SP+++R+M E +++ A                +  +  KP+  ++FEWHFTF G KDS F+GGLYHG I LPP+YP   PS+ LLN N RF+
Sbjct:    9 SPAVKRLMREAQELAAP---------------TYEYSAKPLDDNLFEWHFTFRGPKDSDFDGGLYHGRIILPPEYPMKPPSIMLLNANGRFE 85
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: C3Z989_BRAFL (UBC core domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Z989_BRAFL)

HSP 1 Score: 76.3 bits (186), Expect = 1.750e-15
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            SP+++R+M E K++                  ++ +  +P+  ++FEWHFT  G  DS F+GG+YHG ITLPP+YP   PS+ LL  N RF+
Sbjct:    9 SPAVKRLMREAKEMH---------------EPTEQYYAQPLEDNLFEWHFTVRGPPDSDFQGGMYHGRITLPPEYPMKPPSIMLLTPNGRFE 85
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: H2ZKI2_CIOSA (UBC core domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZKI2_CIOSA)

HSP 1 Score: 78.2 bits (191), Expect = 3.830e-15
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            SP+++R+M E +++ +               ++  +  +P+  ++FEWHFTF G K+S F+GG+YHG I LPP+YP   PS+ LLN N RF+
Sbjct:    9 SPAVKRLMKEAQELSS---------------ATYEYAARPLEDNLFEWHFTFRGPKESDFDGGVYHGRIILPPEYPMKPPSIMLLNANGRFE 85
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: A0A0M0JYC5_9EUKA (Ubiquitin-conjugating enzyme e2 j1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JYC5_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 4.440e-15
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   19 NSPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRF 291
            N+P+++RIM E +++             A   ++  F   P+  ++FEWHFT  G   + FEGG YHG ITLPP+YP   PS+ LLN + RF
Sbjct:    8 NNPAVKRIMREAREI-------------AEAGANPDFEASPLEDNLFEWHFTIRGPPGTAFEGGRYHGRITLPPEYPFKPPSITLLNASGRF 86
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: UPI0009E448C7 (ubiquitin-conjugating enzyme E2 32 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E448C7)

HSP 1 Score: 75.5 bits (184), Expect = 6.420e-15
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPVG-SMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            +P+++RI+ E K++Q+              N SD F   P+  ++FEW F  LG +DS FEGG+YHG I LP DYP   PS  LL  N RF+
Sbjct:   10 NPAVKRILQELKEMQS--------------NPSDDFMSLPLEENIFEWQFAILGPRDSEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFE 87
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: A0A7J7JIQ2_BUGNE (UBE2J1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JIQ2_BUGNE)

HSP 1 Score: 77.4 bits (189), Expect = 8.040e-15
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            SP+++R+M E +++                N ++ +  +P+  ++FEWHFT  G  DS F+GG+YHG I LPPDYP   PS+  L TN RF+
Sbjct:    9 SPAVKRLMREAQELS---------------NPTEQYFAQPLEDNLFEWHFTIRGPSDSDFDGGIYHGRIILPPDYPMKPPSIMFLTTNGRFE 85
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: A0A7J7IT47_BUGNE (UBE2J1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IT47_BUGNE)

HSP 1 Score: 77.4 bits (189), Expect = 9.470e-15
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFK 294
            SP+++R+M E +++                N ++ +  +P+  ++FEWHFT  G  DS F+GG+YHG I LPPDYP   PS+  L TN RF+
Sbjct:    9 SPAVKRLMREAQELS---------------NPTEQYFAQPLEDNLFEWHFTIRGPSDSDFDGGIYHGRIILPPDYPMKPPSIMFLTTNGRFE 85
[Close]
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Match: R7T4G7_CAPTE (UBC core domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T4G7_CAPTE)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-14
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 SPSMRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPV-GSMFEWHFTFLGAKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRF 291
            SP+++R+M E ++++                 ++ F   P+  ++FEWHF+  G +DS FEGG+YHG I LPPDYP   PS+ LL  N RF
Sbjct:    9 SPAVKRLMKEAQELR---------------EPTEQFHAHPLEDNLFEWHFSIRGPEDSEFEGGIYHGRILLPPDYPMKPPSIILLTPNGRF 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48907.12060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7D8_9PHAE2.010e-5282.65UBC core domain-containing protein n=2 Tax=Ectocar... [more]
W7TJJ9_9STRA1.160e-1743.01Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannoch... [more]
F6T7J7_CIOIN1.830e-1643.48Ubiquitin-conjugating enzyme E2 J1-like n=1 Tax=Ci... [more]
C3Z989_BRAFL1.750e-1539.13UBC core domain-containing protein n=4 Tax=Branchi... [more]
H2ZKI2_CIOSA3.830e-1539.13UBC core domain-containing protein n=1 Tax=Ciona s... [more]
A0A0M0JYC5_9EUKA4.440e-1540.22Ubiquitin-conjugating enzyme e2 j1 (Fragment) n=1 ... [more]
UPI0009E448C76.420e-1542.39ubiquitin-conjugating enzyme E2 32 n=2 Tax=Phalaen... [more]
A0A7J7JIQ2_BUGNE8.040e-1539.13UBE2J1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A0A7J7IT47_BUGNE9.470e-1539.13UBE2J1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
R7T4G7_CAPTE1.050e-1439.56UBC core domain-containing protein n=1 Tax=Capitel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48907contigH-elongata_contig48907:1085..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.4e-39
Seed eggNOG ortholog2880.D8LFM3
Preferred nameUBE2J1
KEGG koko:K10578
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000003,GO:0001817,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010556,GO:0010605,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031625,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032680,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042035,GO:0042176,GO:0042177,GO:0042221,GO:0042534,GO:0043161,GO:0043170,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0045861,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051223,GO:0051224,GO:0051239,GO:0051246,GO:0051248,GO:0051603,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070085,GO:0070201,GO:0070647,GO:0070861,GO:0070862,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903555,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0428@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48907.12060.1prot_H-elongata_contig48907.12060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48907 1115..2040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.7018175-UTR-H-elongata_contig48907:1084..11141622930804.7018175-UTR-H-elongata_contig48907:1084..1114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48907 1085..1114 +
1691679577.609003-UTR-H-elongata_contig48907:1084..11141691679577.609003-UTR-H-elongata_contig48907:1084..1114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48907 1085..1114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.7187908-CDS-H-elongata_contig48907:1114..12221622930804.7187908-CDS-H-elongata_contig48907:1114..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 1115..1222 +
1691679577.6207857-CDS-H-elongata_contig48907:1114..12221691679577.6207857-CDS-H-elongata_contig48907:1114..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 1115..1222 +
1622930804.7356977-CDS-H-elongata_contig48907:1866..20401622930804.7356977-CDS-H-elongata_contig48907:1866..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 1867..2040 +
1691679577.6309643-CDS-H-elongata_contig48907:1866..20401691679577.6309643-CDS-H-elongata_contig48907:1866..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48907 1867..2040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48907.12060.1

>prot_H-elongata_contig48907.12060.1 ID=prot_H-elongata_contig48907.12060.1|Name=mRNA_H-elongata_contig48907.12060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MRRIMNEWKQVQAEGQAMGEGPCSARGNSSDTFRLKPVGSMFEWHFTFLG
AKDSPFEGGLYHGSITLPPDYPQSGPSVRLLNTNQRFKARMGR*
back to top

mRNA from alignment at H-elongata_contig48907:1085..2040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48907.12060.1 ID=mRNA_H-elongata_contig48907.12060.1|Name=mRNA_H-elongata_contig48907.12060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig48907:1085..2040+ (Himanthalia elongata Himel1 dioecious)
AGCCGAGTCGTGGCGCAGAACAGCCCCTCGATGCGGCGGATCATGAACGA
GTGGAAGCAGGTTCAGGCTGAGGGGCAGGCGATGGGGGAAGGGCCGTGTA
GCGCCAGAGGGAACTCTAGCGACACCTTTCGCTTGAAGGTGCGATACCGC
CAGCCTGGCATTACATACGGCTCGAACTGCTTTTTTTACCTTGCTCAAGA
AGGACGGTACACTACTCGTGGCTGCACACCATTAACCCCCCCCCCCGGTA
AGTAAATCATCCGCCGATCTCCATGGACACGTAATAAATTATGCTGTTTT
GAGGAGGGAGGGATCTTCTCGCGTCGAAAACCTTCGATTTTATTGATAAT
AGTATATAATACTGCCGTGGTATTCCGACAGTCTCGAGCTTCTCATAAAG
ACCGCCTGAAGTGAAAGACAAGTGCCCCCGTCCGGACACCCCCCCCCCCG
TGACGATAAACTTTGCAACTTCCCTCCTTAGGGCAGTTGGAAGTTTGAGC
CCGACCATGCACGGCCCCCGGTTACGTATCATGGTCTCGACCGATTTTGA
TGAACGTATCACCTATATTAATACGATATAAATAATGCCATCCACATGCC
CCCACGCGATTATTTTATTTTTGACTCACGGGAAGTAGCGACCCCTTGTT
TAAGCCGCTCCCCGCCAAACCGTCCATCGGACGCCCGCAGAGCGAATTCT
ACCCTCCCCCCGTATGTATCTCGTTCGTTGGTGCGGTTGGCTTGCGCGTC
TCCGCGGTGCGTCTCTGCTTTGCGCGGAGCAGCCGGTGGGGAGTATGTTT
GAGTGGCATTTCACGTTTTTAGGCGCCAAGGACTCGCCGTTCGAGGGGGG
GCTGTACCACGGGAGCATCACGTTGCCTCCAGATTATCCTCAGTCTGGGC
CGTCCGTGCGACTACTCAACACCAACCAGCGTTTCAAGGCGAGAATGGGA
AGATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48907:1085..2040+

>mRNA_H-elongata_contig48907.12060.1 ID=mRNA_H-elongata_contig48907.12060.1|Name=mRNA_H-elongata_contig48907.12060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig48907:1085..2040+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGATCATGAACGAGTGGAAGCAGGTTCAGGCTGAGGGGCAGGC
GATGGGGGAAGGGCCGTGTAGCGCCAGAGGGAACTCTAGCGACACCTTTC
GCTTGAAGATGCGGCGGATCATGAACGAGTGGAAGCAGGTTCAGGCTGAG
GGGCAGGCGATGGGGGAAGGGCCGTGTAGCGCCAGAGGGAACTCTAGCGA
CACCTTTCGCTTGAAGCCGGTGGGGAGTATGTTTGAGTGGCATTTCACGT
TTTTAGGCGCCAAGGACTCGCCGTTCGAGGGGGGGCTGTACCACGGGAGC
ATCACGTTGCCTCCAGATTATCCTCAGTCTGGGCCGTCCGTGCGACTACT
CAACACCAACCAGCGTTTCAAGGCGAGAATGGGAAGATAACCGGTGGGGA
GTATGTTTGAGTGGCATTTCACGTTTTTAGGCGCCAAGGACTCGCCGTTC
GAGGGGGGGCTGTACCACGGGAGCATCACGTTGCCTCCAGATTATCCTCA
GTCTGGGCCGTCCGTGCGACTACTCAACACCAACCAGCGTTTCAAGGCGA
GAATGGGAAGATAA
back to top