mRNA_H-elongata_contig48770.12045.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: D8LI67_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI67_ECTSI) HSP 1 Score: 303 bits (777), Expect = 9.480e-92 Identity = 250/585 (42.74%), Postives = 299/585 (51.11%), Query Frame = 1
Query: 28 VALPASTPLHSAAEAGDAAAVVVLIRNG-QAANSRAEWPNYENGATALHLAAQRGYLEVVLALLSAGAEPKGCETT-----------------------STDWDA------------DLXXXXXXXXXXXXXXXXXXXXXXERSDSVASGRKVGDLRVGSHGREV----------------FSEWDGGHTPLHLASAFGHVNVVRALVESGASVHARSGDNDDXXXXXXXXXXXXXXXXXXXXXXXXXDAGDNSGNTALHVAADASSTEFLLAAGANPNLVAQSPYGTCTPLGSYCALIHRLETTEEGVENATLQVKILLSNGADARLQASRND-----------SQGGKSPIISCAAKNGVPGILSALLGAGADPGERDQEGWAPLHDAARGDHVEVVRLLLRAGASIEARTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----GYDPHDDAWLGYQPFDARR---LGVSKRS----------------GETPVEVIGLRHRAAA---PPVKGGS---ADSSQDEDEQMEVFDE----DTGEPDTGASARNAIRRALRREESWRRRRGVILFKASFDRQ 1494
VALP T LH AA DA + +L+R G NSR E PN + GATALHLAAQ+G+LE VLALL GA P G ++T S +WD DL E +D +ASGRKV D HG TPLHLASA G VRALV +GA VH R GD DDXXXXXXXXXXXXXXXXXXXXXXX +AGD GNT LHVA DA + EFLL+ GANPNLVA S YG TPLGSYC LIHRLET + G+ NAT +V+ LL GA ++ + + SPI+SCAAKNGVPGI+SALLGAG DP ERD++GWAP+HDA +GDHV+V+RLLLRAGA +A T ++ + ++P + GV+ G+TP EV+GL++ AAA P GGS AD S DE +TG+ +TG RNAIRRALRRE +WRRRRG +L K +RQ
Sbjct: 18 VALP--TELHKAAHRNDAGTITMLLRGGGMDPNSRVECPNCDEGATALHLAAQQGHLEAVLALLDGGARPGGRDSTDPGRPRSENNRVVSGSSSPSSSSSEEWDISDSDDVSEQEHDDLTPLHLACVGGHTAVVQALLSAGEPTDRLASGRKVSD-HAAVHGNNAAPXXXXXXXXXXXXXXXXXXXXXXTPLHLASACGAAGAVRALVGAGACVHRREGDCDDXXXXXXXXXXXXXXXXXXXXXXXDINAGDEIGNTPLHVARDAETLEFLLSRGANPNLVAMSRYGGGTPLGSYCTLIHRLETDDRGMRNATAKVEALLRYGASVHIRPTTAGDLSFLPHASPATVAAASPILSCAAKNGVPGIVSALLGAGLDPNERDRDGWAPIHDAVQGDHVDVLRLLLRAGAERDAPTRSGGWTPLHLACRYTSVECVVELLRWNASLGPAERPSSFNARAEGSAVHRPGNNETKPIFGVALEDYPPEXXXXXXXXXNGYGKTPAEVVGLKNLAAASTGPAGSGGSGHRADPSLDEXXXXXXXXXXXXXETGDRNTGVGERNAIRRALRREAAWRRRRGAVLVKVCLERQ 599
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A6H5KEN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN5_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.800e-21 Identity = 134/385 (34.81%), Postives = 181/385 (47.01%), Query Frame = 1
Query: 34 LPASTPLHSAAEAGDAAAVVVLIRNGQAANSRA--EWPNYENGATALHLAAQRGYLEVVLALLSAGAEPKGCETTSTDWDADLXXXXXXXXXXXXXXXXXXXXXXERSDSVASGRKVGD--LRVGSHGREVFSEW--DGGH-TPLHLASAFGHVNVVRALVESGASVHARSGDNDDXXXXXXXXXXXXXXXXXXXXXXXXXDAGD--NSGNTALHVAADASSTEFLLAAGANPNLVAQSPYGT-----CTPLGSYCALIHR----------------LETTEEGVENATLQVKILLSNGADARLQASRNDS---QGGKSPIISCAAKNGVPGILSALLGAGADPGERDQE----------GWAPLHDAARGDHVEVVRLLLRAGA 1059
L A+ PLH AA GDA AV L+++ N+R E +Y +GATALH+AA+ +L V +ALL+AGA P G ++D D + S G +V L+ G+ +++F+ + DG T L LA GH+ VVR LVE+GA V+ D D XXXXXXXXXXXXXXX + G +ALH A D E LL AGA+ + Y + TP+G C H+ ++E+ +E AT VK+LL GA +A G + P +S A NG I +AL+ GAD D E P+HDAAR V+++RLLL AGA
Sbjct: 13 LSAAAPLHDAAGVGDAVAVAGLLKDSAHRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDG---RASDEDCEDPTPL-------------------HEASARGGVEVTKALLQAGAR-KDIFASFGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAKXXXXXXXXXXXXXXXXXXXFGHDGFSALHEAKDVRVMEVLLDAGADIEQGISTDYDSHGCDEATPVGWLCLKTHQRFSPLQSVGYECTAGAALSSEDEIERATAMVKLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALVDKGADLDATDWELQDFGSDLDVKIRPIHDAARFGDVDILRLLLVAGA 374
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A6H5KST3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST3_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.090e-20 Identity = 134/385 (34.81%), Postives = 181/385 (47.01%), Query Frame = 1
Query: 34 LPASTPLHSAAEAGDAAAVVVLIRNGQAANSRA--EWPNYENGATALHLAAQRGYLEVVLALLSAGAEPKGCETTSTDWDADLXXXXXXXXXXXXXXXXXXXXXXERSDSVASGRKVGD--LRVGSHGREVFSEW--DGGH-TPLHLASAFGHVNVVRALVESGASVHARSGDNDDXXXXXXXXXXXXXXXXXXXXXXXXXDAGD--NSGNTALHVAADASSTEFLLAAGANPNLVAQSPYGT-----CTPLGSYCALIHR----------------LETTEEGVENATLQVKILLSNGADARLQASRNDS---QGGKSPIISCAAKNGVPGILSALLGAGADPGERDQE----------GWAPLHDAARGDHVEVVRLLLRAGA 1059
L A+ PLH AA GDA AV L+++ N+R E +Y +GATALH+AA+ +L V +ALL+AGA P G ++D D + S G +V L+ G+ +++F+ + DG T L LA GH+ VVR LVE+GA V+ D D XXXXXXXXXXXXXXX + G +ALH A D E LL AGA+ + Y + TP+G C H+ ++E+ +E AT VK+LL GA +A G + P +S A NG I +AL+ GAD D E P+HDAAR V+++RLLL AGA
Sbjct: 13 LSAAAPLHDAAGVGDAVAVAGLLKDSAHRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDG---RASDEDCEDPTPL-------------------HEASARGGVEVTKALLQAGAR-KDIFASFGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAKXXXXXXXXXXXXXXXXXXXFGHDGFSALHEAKDVRVMEVLLDAGADIEQGISTDYDSHGCDEATPVGWLCLKTHQRFSPLQSVGYECTAGAALSSEDEIERATAMVKLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALVDKGADLDATDWELQDFGSDLDVKIRPIHDAARFGDVDILRLLLVAGA 374
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: D8LQT5_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT5_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.530e-19 Identity = 137/385 (35.58%), Postives = 185/385 (48.05%), Query Frame = 1
Query: 34 LPASTPLHSAAEAGDAAAVVVLIRNGQAANSRA--EWPNYENGATALHLAAQRGYLEVVLALLSAGAEPKGCETTSTDWDADLXXXXXXXXXXXXXXXXXXXXXXERSDSVASGRKVGD--LRVGSHGREVFSEWDGGH---TPLHLASAFGHVNVVRALVESGASVHA--RSGDNDDXXXXXXXXXXXXXXXXXXXXXXXXXDAGDNSGNTALHVAADASSTEFLLAAGANPNLVAQSPYGT-----CTPLGSYCALIHR-----------LE-----TTEEGVENATLQVKILLSNGADARLQASRNDS---QGGKSPIISCAAKNGVPGILSALLGAGADPGERDQE----------GWAPLHDAARGDHVEVVRLLLRAGA 1059
LPA+ PLH AA GDA AV L+++G N+R E +Y +GATALH+AA+ +L V +ALL+AGA P G ++D D + S G +V L+ G+ G+++F+ + G T L LA GH+ VVR L E+GA V+ G + XXXXXXXXXXXXXXXXXXXX +ALH A D E LL AGA+ + Y + TP+G H+ LE ++E+ + AT V++LL GA +A G + P +S A NG I +AL+ GAD D E P+HDAAR V+++RLLL AGA
Sbjct: 7 LPAAAPLHDAAGVGDAVAVADLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDG---RASDEDCNDPTPL-------------------HEASARGGVEVTKALLKAGA-GKDIFASFGTGGPCLTALDLAVENGHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALHQAKDVRVMEVLLNAGADIEQGITTDYDSHGCDEATPIGWLSLKTHQRFSPLQNLGYGLEVGAALSSEDEIGRATAMVQLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLGAGA 368
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: D8LQT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 4.020e-19 Identity = 130/366 (35.52%), Postives = 176/366 (48.09%), Query Frame = 1
Query: 34 LPASTPLHSAAEAGDAAAVVVLIRNGQAANSRA--EWPNYENGATALHLAAQRGYLEVVLALLSAGAEPKGCETTSTDWDADLXXXXXXXXXXXXXXXXXXXXXXERSDSVASGRKVGDLRVGSHGREVFSEWDGGH---TPLHLASAFGHVNVVRALVESGASVHARSGDN--DDXXXXXXXXXXXXXXXXXXXXXXXXXDAGDNSGNTALHVAADASSTEFLLAAGANPNLVAQSPYGT----CTPLGSYCALIHRLETTEEGVENATLQVKILLSNGADARLQASRNDS---QGGKSPIISCAAKNGVPGILSALLGAGADPGERDQE----------GWAPLHDAARGDHVEVVRLLLRAGA 1059
LPA+ PLH AA GDA AV L+++G N+R E +Y +GATALH+AA+ +L V + LL+AGA P + R V + + L+ G+ G+++F+ + G T L LA GH+ VVR L E+GA V+ D + XXXXXXXXXXXXXXXXXXX G +ALH A D E LL AGA+ + Y + T S AL ++E+ +E AT V++LL GA +A G + P +S A +G I +AL+ GAD D E P+HDAAR V+++RLLL AGA
Sbjct: 7 LPAAAPLHDAAGVGDAVAVADLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVVLLAAGAWPDVTKIAKIQ---------------------LHFTRPPRGGRVEVAKAL--LKAGA-GKDIFASFGTGGPRLTALDLAVENGHLEVVRTLAEAGADVNLIYEDRYVEVPPLVTAXXXXXXXXXXXXXXXXXXXXGFGQDGFSALHQAKDVRVMEVLLNAGADIEQGITTDYDSHGMWVTDWRSGAAL-----SSEDDIERATAMVQLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYSGTTAICAALIDKGADLDATDWELQDFDVDSDVKIRPIHDAARFRGVDILRLLLGAGA 343
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A7S3PSQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSQ2_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 2.090e-5 Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1
Query: 931 ILSALLGAGADPGERDQEGWAPLHDAARGDHVEVVRLLLRAGASIEAR 1074
+ AL+ AGAD +Q+ W PLH AA H E+VRLLL AGA I+AR
Sbjct: 1 VTEALISAGADVNASEQDNWTPLHHAASVGHPEIVRLLLIAGAEIDAR 48
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A835EC50_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835EC50_9POAL) HSP 1 Score: 58.2 bits (139), Expect = 2.620e-5 Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 883 GKSPIISCAAKNGVPGILSALLGAGADPGERDQEGWAPLHDAARGDHVEVVRLLLRAGASIE 1068
G +P+IS AA G + LL GADP ++D EG+APLHDAA+G E+ RLLL GA ++
Sbjct: 154 GMTPLIS-AASEGQIAAVRYLLDKGADPNKQDHEGYAPLHDAAKGGFDEIARLLLSGGAIVD 214
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A835FAW6_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FAW6_9POAL) HSP 1 Score: 57.4 bits (137), Expect = 4.440e-5 Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 883 GKSPIISCAAKNGVPGILSALLGAGADPGERDQEGWAPLHDAARGDHVEVVRLLLRAGASIE 1068
G +P+IS AA G + LL GADP ++D EG+APLHDAA+G E+ RLLL GA ++
Sbjct: 225 GITPLIS-AASEGQIAAVRYLLDKGADPNKQDHEGYAPLHDAAKGGFDEIARLLLSGGAIVD 285
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Match: A0A3L6SBW0_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SBW0_PANMI) HSP 1 Score: 57.0 bits (136), Expect = 4.450e-5 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 883 GKSPIISCAAKNGVPGILSALLGAGADPGERDQEGWAPLHDAARGDHVEVVRLLLRAGASIE 1068
G +P+IS A G + LL GADP ++D EG+APLHDAA+G E+ RLLL GA ++
Sbjct: 132 GMTPLIS-AVSEGQVAAVRYLLDKGADPNKQDHEGYAPLHDAAKGGFDEIARLLLSGGAIVD 192 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48770.12045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48770.12045.1 >prot_H-elongata_contig48770.12045.1 ID=prot_H-elongata_contig48770.12045.1|Name=mRNA_H-elongata_contig48770.12045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=511bp MACEKPPVAVALPASTPLHSAAEAGDAAAVVVLIRNGQAANSRAEWPNYEback to top mRNA from alignment at H-elongata_contig48770:1970..3817+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48770.12045.1 ID=mRNA_H-elongata_contig48770.12045.1|Name=mRNA_H-elongata_contig48770.12045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1848bp|location=Sequence derived from alignment at H-elongata_contig48770:1970..3817+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48770:1970..3817+ >mRNA_H-elongata_contig48770.12045.1 ID=mRNA_H-elongata_contig48770.12045.1|Name=mRNA_H-elongata_contig48770.12045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3066bp|location=Sequence derived from alignment at H-elongata_contig48770:1970..3817+ (Himanthalia elongata Himel1 dioecious)back to top |