mRNA_H-elongata_contig48643.12024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48643.12024.1
Unique NamemRNA_H-elongata_contig48643.12024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.170e-23
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYA--------SRQLRGVNIAIAPVTATPVLDLE--------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G+  R+CD +C T ++YG  GCN + G YG  CRAC+NDVD A   DT E+R+IMC T  PV  Y         SR LR   I     +     D+E              +F  E+A  P + ++ R ++CAF+ G   E    DVTV+SIL FVP
Sbjct: 1057 GTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTVMPVDVYGRRLTPDDGSRPLRVAKIFSVEDSEEEADDVEEELANVDVDREDVISFFEEAAERPYSQDLKRRNLCAFVGGRAGEEAMWDVTVKSILQFVP 1213          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.960e-22
Identity = 58/158 (36.71%), Postives = 80/158 (50.63%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASR----------------QLRGVNIAIAPVTATPVLDLEA-------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G+  R+CD +C   + YG LGC  + G YG  CRACYNDV+ A   DT  +RAIMC T +PV  Y  R                +        +  +  P +++E        F   +A  P   E+ RGD+CAF+SGG+ E    +VTV+SIL F+P
Sbjct:  713 GTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARTQDTPANRAIMCSTREPVDVYGRRLSAHPEDRFPQLAQQMEAEDSEDENSEGSYEPRVEVEVGREKAIRFFEAAAERPYLGEINRGDLCAFVSGGVGEEAMWEVTVKSILQFMP 870          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.840e-21
Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTS---YASRQLRGVNIAIAPVTATPVLDLEA------------------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G+  R+CD +C   ++YG LGC T+DG YG  CRACYND   A   DT E+R IMC T  PV     + S      ++ IA        + EA                  F  E A  P   ++ RG++CAF+SG + E    +VTV+SIL F+P
Sbjct:  260 GTRGRVCDANCSRRDVYGTLGCGTKDGAYGTECRACYNDGGKAHKQDTPENRVIMCSTAMPVDVRDLWLSTDSEDHSLQIAHAMEAEDREEEAEGSFERVDVDGIREGVISFFEEEAERPFFQDLKRGNLCAFVSGRVDEEAMWEVTVKSILQFMP 415          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-20
Identity = 60/159 (37.74%), Postives = 84/159 (52.83%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRG---VNIAIAPVTAT-------------PVLDLEA--------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G+  R+CD +C +  +YG LGC  ++G YG  CRACYND + A   DT  +RAIMC T +PV  Y  R+L G    ++ +A +T               P +D+E         F   +A      EV RG++CAF+SG   E    +VTV+SIL F+P
Sbjct: 1403 GTRGRVCDSNCSSPNVYGTLGCGAKNGKYGADCRACYNDDEKARKQDTPGNRAIMCSTREPVDVY-GRRLSGHQDFSLELARLTEAENSEDEDSEDGFEPRVDVEVGGREKAVRFFEAAAERTYLGEVERGNLCAFVSGWAGEEAMWEVTVKSILQFMP 1560          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.540e-20
Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQL---RGVNIAIAPVTATPVLDLE-----------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G++ R+CD +C T  +YG  GC  + G+YG  CR CYN+VD A+  D+ ++RAIMC T  PV  Y  R      G  + +A +     +  E            F  E+A  P   ++ R ++CAF+ G + E    +VTV+SIL F+P
Sbjct:  432 GTKGRVCDSNCSTPNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTMMPVDVYGRRLSASDEGDPLRVAKMIEAEEVGDEWSVDVDRVKAIRFFEEAAERPFFQDLKRHNLCAFVGGRVGEEAMWEVTVKSILQFMP 580          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.520e-19
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPV---TSYASRQLRGVNIAIAPVTATPVLDLE------------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G+  R+CD +C   +++G LGC T+DG YG  CRACYND D A   DT  +RAIMC T  PV   + + S      ++ I         + E                  +F  E+A  P   ++ RG++CAF+ G + E    +VTV+SIL F+P
Sbjct:  318 GTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAMEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMP 473          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.830e-16
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRGVNIAIAPVTATPVLDLE----------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
            G++ R+C        +YG  GC  + G+YG  CR CYN+VD A+  D+ ++RAIMC T  PV  Y  R     +    P+    +++ E                 F  E+A    + ++ R ++CAF+ G   E    +VTV SIL F+P
Sbjct: 1121 GTKGRVCXXXXXXXNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVMPVDVYGRRL--SASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERSYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMP 1269          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D8LTR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR8_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.210e-15
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 2
Query:    2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRGVN 223
            G++ R+CD SC+TGE YG  GC  +   YG  CR CYNDV  A+  DT E+RAIMCDT +P ++Y++R+L   N
Sbjct:  577 GTKGRVCDLSCKTGEPYGTYGCAAKSRKYGLSCRRCYNDVAKALKKDTPENRAIMCDTLEPPSTYSARRLEESN 650          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.390e-8
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  399 SYQSTAGIYPSVSVFDTSSARTASIFADDYCG-EGTKLIFYVETGSVISRAFTSK 560
            +Y+   G  P VSV  T S  TAS FAD+YCG   T LI+Y++TGSV+SR+FTSK
Sbjct:  470 AYERAVGGLPGVSVSSTQSVFTASFFADEYCGVANTTLIYYLKTGSVVSRSFTSK 524          
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.270e-7
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  402 YQSTAGIYPSVSVFDTSSARTASIFADDYCG-EGTKLIFYVETGSVISRAFTSK 560
            ++   G  P VSV  T S  TAS FAD+YCG   T LIFY++TGSV+SR+FTSK
Sbjct:  985 FRRAVGGLPGVSVSSTQSVFTASFFADEYCGVANTTLIFYLKTGSVVSRSFTSK 1038          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FI63_ECTSI3.170e-2338.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJP6_9PHAE1.960e-2236.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI38_ECTSI9.840e-2137.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI37_ECTSI1.130e-2037.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4M7_9PHAE3.540e-2035.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L131_9PHAE7.520e-1935.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI39_ECTSI9.830e-1631.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTR8_ECTSI2.210e-1551.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLE5_ECTSI8.390e-856.36Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JSN3_9PHAE2.270e-757.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48643contigH-elongata_contig48643:2067..2973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size561
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48643.12024.1prot_H-elongata_contig48643.12024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48643 2197..2896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.1326218-UTR-H-elongata_contig48643:2066..21961622930801.1326218-UTR-H-elongata_contig48643:2066..2196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48643 2067..2196 +
1691679575.938391-UTR-H-elongata_contig48643:2066..21961691679575.938391-UTR-H-elongata_contig48643:2066..2196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48643 2067..2196 +
1622930801.2234335-UTR-H-elongata_contig48643:2896..29731622930801.2234335-UTR-H-elongata_contig48643:2896..2973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48643 2897..2973 +
1691679575.9773788-UTR-H-elongata_contig48643:2896..29731691679575.9773788-UTR-H-elongata_contig48643:2896..2973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48643 2897..2973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.165553-CDS-H-elongata_contig48643:2196..22311622930801.165553-CDS-H-elongata_contig48643:2196..2231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2197..2231 +
1691679575.9476871-CDS-H-elongata_contig48643:2196..22311691679575.9476871-CDS-H-elongata_contig48643:2196..2231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2197..2231 +
1622930801.1939847-CDS-H-elongata_contig48643:2359..26011622930801.1939847-CDS-H-elongata_contig48643:2359..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2360..2601 +
1691679575.957782-CDS-H-elongata_contig48643:2359..26011691679575.957782-CDS-H-elongata_contig48643:2359..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2360..2601 +
1622930801.2120347-CDS-H-elongata_contig48643:2819..28961622930801.2120347-CDS-H-elongata_contig48643:2819..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2820..2896 +
1691679575.9674354-CDS-H-elongata_contig48643:2819..28961691679575.9674354-CDS-H-elongata_contig48643:2819..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 2820..2896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48643.12024.1

>prot_H-elongata_contig48643.12024.1 ID=prot_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MAADTAEDRAIMCDTEKPVTSYASRQLRGVNIAIAPVTATPVLDLEAFMT
ESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVPEHGWNLSQ
CQRIRHVLGAYGKYFCR*
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mRNA from alignment at H-elongata_contig48643:2067..2973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48643.12024.1 ID=mRNA_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig48643:2067..2973+ (Himanthalia elongata Himel1 dioecious)
CGGCTCTGAATCACGCATCTGCGACCCCTCGTGCGAGACGGGAGAGCTAT ACGGAGACCTCGGCTGCAACACCGAGGACGGCTTGTATGGACGCTTCTGT CGCGCCTGCTACAATGATGTCGATGCCGCTATGGCCGCTGACACGGCTGA GGACCGCGCGATCATGTGAGAGCTGACTTGCTTTGCTGTTTTATGTTACG AATATCGCTTCCGTTTATATCCCAGTCACCATTCGAGTTTTCCCTTGCTC AAGTGATGACCCCGTCCCCCTTCACCTTCCTTACACGTAACAGGTGCGAT ACGGAAAAGCCAGTGACCTCGTACGCTAGCCGCCAACTCCGTGGCGTGAA CATTGCTATCGCTCCGGTTACGGCGACGCCTGTCTTGGATCTCGAAGCGT TCATGACGGAGTCTGCCAGCACTCCTCTTACGGATGAAGTTGTTCGTGGG GATATATGCGCATTCATCTCGGGTGGCATGAAGGAGATTAAACAGACTGA CGTGACAGTACAAAGCATTCTTGACTTCGTACCAGGAGTACGGGTGGTTA TCGCTGCTGAAACCGGAAGCAAGTCTGCTTATGAGAGGTGAACTTTGGTG CAAGGGTCGCCGATTGGCTCGAGGATGAAACTACTCGTCATGTCCCCATA TATACACAGGAAATTCAGTAATGATAATTTCCCTTTTGTTGAACCCCTGG TGCTTGCATGTATGCTTATTTCATTCCTTGCTCTTCGTGCCTACATCATC CACAGCACGGCTGGAATCTATCCCAGTGTCAGCGTATTCGACACGTCCTC GGCGCGTACGGCAAGTATTTTTGCCGATGACTACTGTGGTGAGGGCACCA AGCTCATCTTCTATGTTGAGACGGGATCTGTGATATCCCGAGCCTTCACC TCCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig48643:2067..2973+

>mRNA_H-elongata_contig48643.12024.1 ID=mRNA_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig48643:2067..2973+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCTGACACGGCTGAGGACCGCGCGATCATATGGCCGCTGACACG
GCTGAGGACCGCGCGATCATGTGCGATACGGAAAAGCCAGTGACCTCGTA
CGCTAGCCGCCAACTCCGTGGCGTGAACATTGCTATCGCTCCGGTTACGG
CGACGCCTGTCTTGGATCTCGAAGCGTTCATGACGGAGTCTGCCAGCACT
CCTCTTACGGATGAAGTTGTTCGTGGGGATATATGCGCATTCATCTCGGG
TGGCATGAAGGAGATTAAACAGACTGACGTGACAGTACAAAGCATTCTTG
ACTTCGTACCAGGTGCGATACGGAAAAGCCAGTGACCTCGTACGCTAGCC
GCCAACTCCGTGGCGTGAACATTGCTATCGCTCCGGTTACGGCGACGCCT
GTCTTGGATCTCGAAGCGTTCATGACGGAGTCTGCCAGCACTCCTCTTAC
GGATGAAGTTGTTCGTGGGGATATATGCGCATTCATCTCGGGTGGCATGA
AGGAGATTAAACAGACTGACGTGACAGTACAAAGCATTCTTGACTTCGTA
CCAGAGCACGGCTGGAATCTATCCCAGTGTCAGCGTATTCGACACGTCCT
CGGCGCGTACGGCAAGTATTTTTGCCGATGAAGCACGGCTGGAATCTATC
CCAGTGTCAGCGTATTCGACACGTCCTCGGCGCGTACGGCAAGTATTTTT
GCCGATGA
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