mRNA_H-elongata_contig48643.12024.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI) HSP 1 Score: 106 bits (264), Expect = 3.170e-23 Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYA--------SRQLRGVNIAIAPVTATPVLDLE--------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G+ R+CD +C T ++YG GCN + G YG CRAC+NDVD A DT E+R+IMC T PV Y SR LR I + D+E +F E+A P + ++ R ++CAF+ G E DVTV+SIL FVP
Sbjct: 1057 GTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTVMPVDVYGRRLTPDDGSRPLRVAKIFSVEDSEEEADDVEEELANVDVDREDVISFFEEAAERPYSQDLKRRNLCAFVGGRAGEEAMWDVTVKSILQFVP 1213
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.960e-22 Identity = 58/158 (36.71%), Postives = 80/158 (50.63%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASR----------------QLRGVNIAIAPVTATPVLDLEA-------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G+ R+CD +C + YG LGC + G YG CRACYNDV+ A DT +RAIMC T +PV Y R + + + P +++E F +A P E+ RGD+CAF+SGG+ E +VTV+SIL F+P
Sbjct: 713 GTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARTQDTPANRAIMCSTREPVDVYGRRLSAHPEDRFPQLAQQMEAEDSEDENSEGSYEPRVEVEVGREKAIRFFEAAAERPYLGEINRGDLCAFVSGGVGEEAMWEVTVKSILQFMP 870
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 9.840e-21 Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTS---YASRQLRGVNIAIAPVTATPVLDLEA------------------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G+ R+CD +C ++YG LGC T+DG YG CRACYND A DT E+R IMC T PV + S ++ IA + EA F E A P ++ RG++CAF+SG + E +VTV+SIL F+P
Sbjct: 260 GTRGRVCDANCSRRDVYGTLGCGTKDGAYGTECRACYNDGGKAHKQDTPENRVIMCSTAMPVDVRDLWLSTDSEDHSLQIAHAMEAEDREEEAEGSFERVDVDGIREGVISFFEEEAERPFFQDLKRGNLCAFVSGRVDEEAMWEVTVKSILQFMP 415
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.130e-20 Identity = 60/159 (37.74%), Postives = 84/159 (52.83%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRG---VNIAIAPVTAT-------------PVLDLEA--------FMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G+ R+CD +C + +YG LGC ++G YG CRACYND + A DT +RAIMC T +PV Y R+L G ++ +A +T P +D+E F +A EV RG++CAF+SG E +VTV+SIL F+P
Sbjct: 1403 GTRGRVCDSNCSSPNVYGTLGCGAKNGKYGADCRACYNDDEKARKQDTPGNRAIMCSTREPVDVY-GRRLSGHQDFSLELARLTEAENSEDEDSEDGFEPRVDVEVGGREKAVRFFEAAAERTYLGEVERGNLCAFVSGWAGEEAMWEVTVKSILQFMP 1560
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 3.540e-20 Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQL---RGVNIAIAPVTATPVLDLE-----------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G++ R+CD +C T +YG GC + G+YG CR CYN+VD A+ D+ ++RAIMC T PV Y R G + +A + + E F E+A P ++ R ++CAF+ G + E +VTV+SIL F+P
Sbjct: 432 GTKGRVCDSNCSTPNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTMMPVDVYGRRLSASDEGDPLRVAKMIEAEEVGDEWSVDVDRVKAIRFFEEAAERPFFQDLKRHNLCAFVGGRVGEEAMWEVTVKSILQFMP 580
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 7.520e-19 Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPV---TSYASRQLRGVNIAIAPVTATPVLDLE------------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G+ R+CD +C +++G LGC T+DG YG CRACYND D A DT +RAIMC T PV + + S ++ I + E +F E+A P ++ RG++CAF+ G + E +VTV+SIL F+P
Sbjct: 318 GTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAMEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMP 473
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 9.830e-16 Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRGVNIAIAPVTATPVLDLE----------------AFMTESASTPLTDEVVRGDICAFISGGMKEIKQTDVTVQSILDFVP 406
G++ R+C +YG GC + G+YG CR CYN+VD A+ D+ ++RAIMC T PV Y R + P+ +++ E F E+A + ++ R ++CAF+ G E +VTV SIL F+P
Sbjct: 1121 GTKGRVCXXXXXXXNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVMPVDVYGRRL--SASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERSYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMP 1269
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D8LTR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR8_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.210e-15 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 2
Query: 2 GSESRICDPSCETGELYGDLGCNTEDGLYGRFCRACYNDVDAAMAADTAEDRAIMCDTEKPVTSYASRQLRGVN 223
G++ R+CD SC+TGE YG GC + YG CR CYNDV A+ DT E+RAIMCDT +P ++Y++R+L N
Sbjct: 577 GTKGRVCDLSCKTGEPYGTYGCAAKSRKYGLSCRRCYNDVAKALKKDTPENRAIMCDTLEPPSTYSARRLEESN 650
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 8.390e-8 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 3
Query: 399 SYQSTAGIYPSVSVFDTSSARTASIFADDYCG-EGTKLIFYVETGSVISRAFTSK 560
+Y+ G P VSV T S TAS FAD+YCG T LI+Y++TGSV+SR+FTSK
Sbjct: 470 AYERAVGGLPGVSVSSTQSVFTASFFADEYCGVANTTLIYYLKTGSVVSRSFTSK 524
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 2.270e-7 Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 402 YQSTAGIYPSVSVFDTSSARTASIFADDYCG-EGTKLIFYVETGSVISRAFTSK 560
++ G P VSV T S TAS FAD+YCG T LIFY++TGSV+SR+FTSK
Sbjct: 985 FRRAVGGLPGVSVSSTQSVFTASFFADEYCGVANTTLIFYLKTGSVVSRSFTSK 1038 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48643.12024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48643.12024.1 >prot_H-elongata_contig48643.12024.1 ID=prot_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp MAADTAEDRAIMCDTEKPVTSYASRQLRGVNIAIAPVTATPVLDLEAFMTback to top mRNA from alignment at H-elongata_contig48643:2067..2973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48643.12024.1 ID=mRNA_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig48643:2067..2973+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48643:2067..2973+ >mRNA_H-elongata_contig48643.12024.1 ID=mRNA_H-elongata_contig48643.12024.1|Name=mRNA_H-elongata_contig48643.12024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig48643:2067..2973+ (Himanthalia elongata Himel1 dioecious)back to top |