mRNA_H-elongata_contig4863.12022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4863.12022.1
Unique NamemRNA_H-elongata_contig4863.12022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.250e-24
Identity = 66/137 (48.18%), Postives = 97/137 (70.80%), Query Frame = 3 
Query:  711 GAMLVRAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAKRATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHAHIGVEIDGKVAETEEVVQNIHNQTENKTEGTLALI 1121
            G +  +AKAV A VRRNASKR DE +  QNKLA +L S + +L +A+++E   A+ L+EEQ++ MK AV +L+E+Y+EAA+VQ +V +L +CM QHF+VV +HI  ++  K+ +TEE+V  IH Q +     TL+LI
Sbjct:   15 GEISAKAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDK----TLSLI 147
[Close]
BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Match: D8LNP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.190e-21
Identity = 58/110 (52.73%), Postives = 82/110 (74.55%), Query Frame = 3 
Query:  726 RAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAKRATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHAHIGVEIDGKVAET 1055
            +AKAV A VRRNASKR DE +  QNKLA +L S + +L +A+++E   A+AL+EEQ+  MK AV +L+E+Y+EAA+VQ QV +L +CM QHF+VV +HI  ++  K+ ET
Sbjct:   11 KAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLHAALEEEDHLASALMEEQERTMKEAVDSLSEKYEEAAKVQAQVKLLGDCMRQHFQVVRSHIVDQVGSKLTET 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6H0_9PHAE1.250e-2448.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP6_ECTSI1.190e-2152.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4863contigH-elongata_contig4863:1071..4451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006340.1
Exons4
Model size2368
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4863.12022.1prot_H-elongata_contig4863.12022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4863 1787..3225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.4578977-UTR-H-elongata_contig4863:1070..17861622930800.4578977-UTR-H-elongata_contig4863:1070..1786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4863 1071..1786 +
1691679575.8439698-UTR-H-elongata_contig4863:1070..17861691679575.8439698-UTR-H-elongata_contig4863:1070..1786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4863 1071..1786 +
1622930800.547003-UTR-H-elongata_contig4863:3225..44511622930800.547003-UTR-H-elongata_contig4863:3225..4451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4863 3226..4451 +
1691679575.896202-UTR-H-elongata_contig4863:3225..44511691679575.896202-UTR-H-elongata_contig4863:3225..4451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4863 3226..4451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.4702976-CDS-H-elongata_contig4863:1786..18901622930800.4702976-CDS-H-elongata_contig4863:1786..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 1787..1890 +
1691679575.8534608-CDS-H-elongata_contig4863:1786..18901691679575.8534608-CDS-H-elongata_contig4863:1786..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 1787..1890 +
1622930800.4884875-CDS-H-elongata_contig4863:2226..23381622930800.4884875-CDS-H-elongata_contig4863:2226..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 2227..2338 +
1691679575.8641806-CDS-H-elongata_contig4863:2226..23381691679575.8641806-CDS-H-elongata_contig4863:2226..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 2227..2338 +
1622930800.5077689-CDS-H-elongata_contig4863:2510..26341622930800.5077689-CDS-H-elongata_contig4863:2510..2634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 2511..2634 +
1691679575.873283-CDS-H-elongata_contig4863:2510..26341691679575.873283-CDS-H-elongata_contig4863:2510..2634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 2511..2634 +
1622930800.526846-CDS-H-elongata_contig4863:3139..32251622930800.526846-CDS-H-elongata_contig4863:3139..3225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 3140..3225 +
1691679575.8830843-CDS-H-elongata_contig4863:3139..32251691679575.8830843-CDS-H-elongata_contig4863:3139..3225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4863 3140..3225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4863.12022.1

>prot_H-elongata_contig4863.12022.1 ID=prot_H-elongata_contig4863.12022.1|Name=mRNA_H-elongata_contig4863.12022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MLVRAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAK
RATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHA
HIGVEIDGKVAETEEVVQNIHNQTENKTEGTLALITAENIT*
back to top

mRNA from alignment at H-elongata_contig4863:1071..4451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4863.12022.1 ID=mRNA_H-elongata_contig4863.12022.1|Name=mRNA_H-elongata_contig4863.12022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3381bp|location=Sequence derived from alignment at H-elongata_contig4863:1071..4451+ (Himanthalia elongata Himel1 dioecious)
CTGGGGAGGAGATGGTGGCAGGGACGGGACTAGGGACGAGAACGGGAAAG
GGTAAATGGGAGAGAGAGCCCGGTTGTTTACCAAGGGATATTACAGGTGG
GGGGAAAGACGGGAGAGAGGGGCTATCACCAACGGGTAACCCGCATACAC
AGCGGCAAGACCCGATACCCCAGCGAGAATGTCGTGTCATGCGGATGACC
AAAGGCCAGGGGCGGGATTGGGAAGAGGGAGGAAGAGTGAAAAAACGTAA
GGAGATGGAAAACGGGGGAGATTTGGGGAGCAATAGTAAGAAACGTAGAC
AGGAGAGCGTTGGTCCAGTAGGGACCGACCGAAGCTATACAGCGAACAAG
AAAGCGCAAAGTGTTGAGAGCTTAGATACGAAATGTTGACAGTGTTGTGT
CTCCTTTGTGACAACTGATTAGATTATTTTGTAGCAAATATTATTGATCC
CCAATGGGAGGATCAATACGAGAGTACTGTAGCCTAGAAGGACTAGCATG
ACAGGGCCGGATTGCGCGATTATGTGCAATTTAATAAATATATACTTCGT
CCACACACACGGCGTGAGAAAATATTTGTAGCTTCCCATGGCTCATGACC
GGGGCAACCTCTGTGCCGTGACTATTTAAAGCTGGCATTTTCGGGATTCG
TCTATACGGGGTGGTCCCGTCGACCGTTGCTTGTGGTGCGTTCTTGCCGT
CGACGATCTTGGGGCGATGCTAGTGAGAGCGAAGGCGGTGGTGGCAAGGG
TCCGAAGAAACGCATCAAAGCGAGCGGACGAGACCAAGTTTAAGCAAAAC
AAACTCGCCGCTGATCTCAGGCAAGCAGCGAGGGGTTCGAGATGAAAGCC
GTGATCGCCATCGTGTTTTTTTTTTTACCACAGGCGGGAATAAATATCCC
ACACGATCATCTTGCCCTGCGTATGATAGGAAAAATCACGTGTGACGCCC
TGTTGCTGTTTGAGGTACAGAGGAGTTCCTCGGGTACGAATCACTTGTCT
ATCATTCTTGCGAATCGACTGCATCACAGACAGCTTTTGCTGAATCGTAG
ATCCCCCTCGTAGGCAGATGCTTGGGGCCGTAAGGGTGAACGACAGTGTC
TCCAAAACGACCTCGCTATAGCTCTGAACACAGCGTGTCCTCGCGTTGCC
TCGCAGCTCCGCAATGGACGCTTTGCGCTCCGCTATTCAGGACGAGGCAA
AGCGAGCGACGGCCCTAGTTGAGGAGCAGAAGGATGAGATGAAGGCCGCA
GTGGGTGCACTCAATGAAGTAAGCGTAGGCGATGAAGCTGCGCGATTATG
GTTTCGGTTCTTCGGACACCGCCGCATGTCGTCAGTGAGATTCGCCCTTT
GGCTGTTGCTGCTACCCAGCCGCTGCGTCGGTAAACCACATTGCTAAGCT
CCCGCTTGATCGCTTAACGTTTTTCATTGTACGTGCGCAGAGGTACGACG
AGGCTGCCGAGGTGCAAAGACAGGTGAATGTTTTGGTGGAGTGCATGCAT
CAACACTTTCGTGTGGTACACGCTCACATCGGGGTGGAAATCGATGGAAA
GGTCGCGGAGACAGGTACGCGCCCATACGAATAGAGTCCGAAGGATGATT
CGTGCCTTGAGGATTAGTCTAGATTCCCCGGGGTAACCTGATGCCGCAGT
TCATCTTTCTACGAAGCTCAGTTCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTATATTTATTAAAATGCACATAACCGCGAAATCCGGCCCTGTCAT
GCTTGTCCTTCTATGTTACTCTCGCATTGATCCTCCCAATGAGGGTTCAA
TCATGTTGTTGTGTGTGATGATTAATATGGGCAGCGATGATTTATGGCGA
AAGTTGTCATGGAAACGTCACGCCTGCACTACTGCTCTCCGCGGAAGTGT
GACCGTTACATTACGATTCGCGTGTTCTTGGCTACTCATTCAAGCTCCCC
ACTTTCTCTTCTGCCTCGGATTTACTCCTCGTTCACGCCGCACCCGAAAA
AATGCTCTCTCCTGGTTCCATATCCCCAATGCACTGCGCTGCGTCCTTAC
ATGTATTCTCGACTTTCAGAGGAAGTGGTACAAAACATACACAATCAAAC
TGAAAACAAAACCGAGGGTACCCTTGCTCTCATCACCGCGGAGAATATTA
CTTGATTGGACCGAGCCGAGGCGAGGAACACCACGCGGCCACCGGTCTCC
ACGGAGAGAGAAGCAATCGTCTTCACGGGAAGGGAAGGGAGGAGATGCTG
ATGTTATACATGCATAAACCCTGTGCCGTGTTTGGGATTCGTTATCGCTG
AGAAACCAGCCGGGTCGCGTCGCTGCACTCGGGTACTGTACGCGTGTGGT
CGTGAGGGTTCAATTTACTGTAAGCCCTTATGCCCCCCCCCACTATTGCT
AGAGCGGGAAATTATATGTATGTCTAGTCGTACGTATGGACCTCGCGTAT
GGTATATGATTACGAGACGTAGTTTGGTGTGTCCGGTCTTTACTCATAGC
AGTTGCTACCGTGAAGTTTATACCCGAGATCATCGGTGTGTGTGTGTGTG
TGTGGTCATCATATGTAGCAAAGTAGCGCCCATCTTCTTACATATATTAC
TGTTTGCTTAGTTTTCGTGTATGCCCTCCCCCCAATCCCCGCGTCCCCCC
GGTCTTGATTGTTTTATAAGAAAATCAAAAGTTTGTTGATTCCCGTGTTT
GTGGGTAGACACTCTGGACGAATCCGGCTCGAAGCGTCAGTGTCGGGGAG
TGTATAGATATATCGGATAGAGCTGACAGAGGATCACGACAGTAGGGTAC
ACCACAATAGGGTACCGGACCGCAGGGTACAGTGCAATAGGATACCGGGC
AGCAGGGTACAATACAATTGTAGAACAATACATGAAACCGAGTATTTCCT
AGTGCCGTTGACGAATTATAATTATACCGGGGTGGGGTCTGGTGCGAATG
GGGAAGGCTCCCACTTGCGTGACCTTTTTGTAAAAGACAATACTTCGAGA
GGCGACACACTCCTTCAAATATTTTGTGCCTAGTAAAAGAGTTTTCATTG
TCACTTGTCAGTTGTCTTGCCCGACATGCCATTGGTGAGATGATTCATTC
GGTTTGTGAGCTGATTCATTCGGTTTGTGAGATGATTCATTCGGTTTGTG
TGTGTGTGATTGTGTTTTGTGTGTGTGTGTGTTTTTTTAAATTCCAACCG
TGGTAACATATTTTCCATTTTATACCAACATGTAGCATCAGGCGGTGTAC
GAGAAAATCTCAACAAGCTTAGCTCAGTTTACGGCATATTACGTTTCGAA
TAAGCGATCGGGTCAAGACTACTTGTATGCGTTTAACACTTTTCAGCCCC
ATCGCCCAAAAAATGTATACGAAACCTGGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig4863:1071..4451+

>mRNA_H-elongata_contig4863.12022.1 ID=mRNA_H-elongata_contig4863.12022.1|Name=mRNA_H-elongata_contig4863.12022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig4863:1071..4451+ (Himanthalia elongata Himel1 dioecious)
ATGCTAGTGAGAGCGAAGGCGGTGGTGGCAAGGGTCCGAAGAAACGCATC
AAAGCGAGCGGACGAGACCAAGTTTAAGCAAAACAAACTCGCCGCTGATC
TCAGATGCTAGTGAGAGCGAAGGCGGTGGTGGCAAGGGTCCGAAGAAACG
CATCAAAGCGAGCGGACGAGACCAAGTTTAAGCAAAACAAACTCGCCGCT
GATCTCAGCTCCGCAATGGACGCTTTGCGCTCCGCTATTCAGGACGAGGC
AAAGCGAGCGACGGCCCTAGTTGAGGAGCAGAAGGATGAGATGAAGGCCG
CAGTGGGTGCACTCAATGAACTCCGCAATGGACGCTTTGCGCTCCGCTAT
TCAGGACGAGGCAAAGCGAGCGACGGCCCTAGTTGAGGAGCAGAAGGATG
AGATGAAGGCCGCAGTGGGTGCACTCAATGAAAGGTACGACGAGGCTGCC
GAGGTGCAAAGACAGGTGAATGTTTTGGTGGAGTGCATGCATCAACACTT
TCGTGTGGTACACGCTCACATCGGGGTGGAAATCGATGGAAAGGTCGCGG
AGACAGAGGTACGACGAGGCTGCCGAGGTGCAAAGACAGGTGAATGTTTT
GGTGGAGTGCATGCATCAACACTTTCGTGTGGTACACGCTCACATCGGGG
TGGAAATCGATGGAAAGGTCGCGGAGACAGAGGAAGTGGTACAAAACATA
CACAATCAAACTGAAAACAAAACCGAGGGTACCCTTGCTCTCATCACCGC
GGAGAATATTACTTGAAGGAAGTGGTACAAAACATACACAATCAAACTGA
AAACAAAACCGAGGGTACCCTTGCTCTCATCACCGCGGAGAATATTACTT
GA
back to top