prot_H-elongata_contig4863.12022.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4863.12022.1
Unique Nameprot_H-elongata_contig4863.12022.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length142
Homology
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BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.990e-27
Identity = 65/132 (49.24%), Postives = 95/132 (71.97%), Query Frame = 0 
Query:    4 RAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAKRATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHAHIGVEIDGKVAETEEVVQNIHNQTENKTEGTLALI 135
            +AKAV A VRRNASKR DE +  QNKLA +L S + +L +A+++E   A+ L+EEQ++ MK AV +L+E+Y+EAA+VQ +V +L +CM QHF+VV +HI  ++  K+ +TEE+V  IH Q +     TL+LI
Sbjct:   20 KAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDK----TLSLI 147
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BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Match: D8LNP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.760e-24
Identity = 58/110 (52.73%), Postives = 82/110 (74.55%), Query Frame = 0 
Query:    4 RAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAKRATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHAHIGVEIDGKVAET 113
            +AKAV A VRRNASKR DE +  QNKLA +L S + +L +A+++E   A+AL+EEQ+  MK AV +L+E+Y+EAA+VQ QV +L +CM QHF+VV +HI  ++  K+ ET
Sbjct:   11 KAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLHAALEEEDHLASALMEEQERTMKEAVDSLSEKYEEAAKVQAQVKLLGDCMRQHFQVVRSHIVDQVGSKLTET 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4863.12022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6H0_9PHAE3.990e-2749.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP6_ECTSI1.760e-2452.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4863contigH-elongata_contig4863:1787..3225 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4863.12022.1mRNA_H-elongata_contig4863.12022.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4863 1071..4451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4863.12022.1 ID=prot_H-elongata_contig4863.12022.1|Name=mRNA_H-elongata_contig4863.12022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MLVRAKAVVARVRRNASKRADETKFKQNKLAADLSSAMDALRSAIQDEAK
RATALVEEQKDEMKAAVGALNERYDEAAEVQRQVNVLVECMHQHFRVVHA
HIGVEIDGKVAETEEVVQNIHNQTENKTEGTLALITAENIT*
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