mRNA_H-elongata_contig48377.11989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48377.11989.1
Unique NamemRNA_H-elongata_contig48377.11989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.630e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   55 SDQRLPPGWVVRIDDQGRTYYMNTILKATQWQRPTQRVPSNRRISV---QAVDTPAARS 222
            S   LPPGW+ R DD G+TY+ +T+ K TQW+RPTQ  P +  +S    + +D P A +
Sbjct:  462 SGDPLPPGWISRTDDSGKTYFQDTVSKTTQWERPTQH-PRSSSVSSGRPEVIDMPMAHT 519
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A1B6CLZ1_9HEMI (E3 ubiquitin-protein ligase n=4 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CLZ1_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 8.360e-6
Identity = 25/56 (44.64%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:   67 LPPGWVVRIDDQGRTYYMNTILKATQWQRPTQRVPSNRRISVQAVDTPAARSHESF 234
            LP GW  R D  GRTYY+N ILK T W+RPT    +    + Q +D+ A   H  F
Sbjct:  221 LPRGWEERQDANGRTYYVNHILKTTHWERPTISNTAENGTNSQNIDSAATEFHRRF 276
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A182JCA4_9DIPT (2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JCA4_9DIPT)

HSP 1 Score: 50.4 bits (119), Expect = 2.900e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 PLVRSHRAYDEKVNIPDESDQRLPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            P+      Y ++   P+     LPPGW VR D  GRTYY+N + + TQW+RP+
Sbjct:  222 PVHHPQHHYHQRQQQPEP----LPPGWEVRQDPVGRTYYVNHVARTTQWERPS 270
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A182ITS4_9DIPT (HECT-type E3 ubiquitin transferase n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182ITS4_9DIPT)

HSP 1 Score: 50.4 bits (119), Expect = 2.950e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 PLVRSHRAYDEKVNIPDESDQRLPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            P+      Y ++   P+     LPPGW VR D  GRTYY+N + + TQW+RP+
Sbjct:  222 PVHHPQHHYHQRQQQPEP----LPPGWEVRQDPVGRTYYVNHVARTTQWERPS 270
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A084WSZ0_ANOSI (HECT-type E3 ubiquitin transferase n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084WSZ0_ANOSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.950e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 PLVRSHRAYDEKVNIPDESDQRLPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            P+      Y ++   P+     LPPGW VR D  GRTYY+N + + TQW+RP+
Sbjct:  266 PVHHPQHHYHQRQQQPEP----LPPGWEVRQDPVGRTYYVNHVARTTQWERPS 314
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A2M4CJ69_ANODA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CJ69_ANODA)

HSP 1 Score: 50.1 bits (118), Expect = 3.990e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   67 LPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            LPPGW VR D  GRTYY+N I + TQW+RP+
Sbjct:  299 LPPGWEVRQDPVGRTYYVNHIARTTQWERPS 329
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A2M3Z473_9DIPT (HECT-type E3 ubiquitin transferase (Fragment) n=8 Tax=Nyssorhynchus TaxID=44543 RepID=A0A2M3Z473_9DIPT)

HSP 1 Score: 50.1 bits (118), Expect = 4.010e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   67 LPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            LPPGW VR D  GRTYY+N I + TQW+RP+
Sbjct:   83 LPPGWEVRQDPVGRTYYVNHIARTTQWERPS 113
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A2M4CMV3_ANODA (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CMV3_ANODA)

HSP 1 Score: 50.1 bits (118), Expect = 4.020e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   67 LPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            LPPGW VR D  GRTYY+N I + TQW+RP+
Sbjct:  144 LPPGWEVRQDPVGRTYYVNHIARTTQWERPS 174
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A7M7KUP3_VARDE (HECT-type E3 ubiquitin transferase n=3 Tax=Varroa TaxID=62624 RepID=A0A7M7KUP3_VARDE)

HSP 1 Score: 50.1 bits (118), Expect = 4.040e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   67 LPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            LPPGW  R+D  GR YY+N IL+ TQW+RPT
Sbjct:  335 LPPGWEERMDANGRNYYVNHILRYTQWRRPT 365
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BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Match: A0A183N9D5_9TREM (Uncharacterized protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183N9D5_9TREM)

HSP 1 Score: 49.7 bits (117), Expect = 4.930e-5
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   58 DQRLPPGWVVRIDDQGRTYYMNTILKATQWQRPT 159
            +  LPPGW  R+D  GRTYYM+ + K TQW RP+
Sbjct:  265 ENSLPPGWDERVDQNGRTYYMDHVNKRTQWDRPS 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48377.11989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FP33_ECTSI3.630e-744.07E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
A0A1B6CLZ1_9HEMI8.360e-644.64E3 ubiquitin-protein ligase n=4 Tax=Clastoptera ar... [more]
A0A182JCA4_9DIPT2.900e-541.512-oxoisovalerate dehydrogenase subunit alpha n=1 T... [more]
A0A182ITS4_9DIPT2.950e-541.51HECT-type E3 ubiquitin transferase n=1 Tax=Anophel... [more]
A0A084WSZ0_ANOSI2.950e-541.51HECT-type E3 ubiquitin transferase n=1 Tax=Anophel... [more]
A0A2M4CJ69_ANODA3.990e-564.52HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A2M3Z473_9DIPT4.010e-564.52HECT-type E3 ubiquitin transferase (Fragment) n=8 ... [more]
A0A2M4CMV3_ANODA4.020e-564.52HECT-type E3 ubiquitin transferase (Fragment) n=2 ... [more]
A0A7M7KUP3_VARDE4.040e-564.52HECT-type E3 ubiquitin transferase n=3 Tax=Varroa ... [more]
A0A183N9D5_9TREM4.930e-555.88Uncharacterized protein n=2 Tax=Schistosoma TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48377contigH-elongata_contig48377:402..1506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size251
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48377.11989.1prot_H-elongata_contig48377.11989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48377 402..1506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.901417-CDS-H-elongata_contig48377:401..4371622930796.901417-CDS-H-elongata_contig48377:401..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 402..437 +
1691679574.2390594-CDS-H-elongata_contig48377:401..4371691679574.2390594-CDS-H-elongata_contig48377:401..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 402..437 +
1622930796.918248-CDS-H-elongata_contig48377:665..7411622930796.918248-CDS-H-elongata_contig48377:665..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 666..741 +
1691679574.2488883-CDS-H-elongata_contig48377:665..7411691679574.2488883-CDS-H-elongata_contig48377:665..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 666..741 +
1622930796.9421318-CDS-H-elongata_contig48377:1369..15061622930796.9421318-CDS-H-elongata_contig48377:1369..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 1370..1506 +
1691679574.2708216-CDS-H-elongata_contig48377:1369..15061691679574.2708216-CDS-H-elongata_contig48377:1369..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48377 1370..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48377.11989.1

>prot_H-elongata_contig48377.11989.1 ID=prot_H-elongata_contig48377.11989.1|Name=mRNA_H-elongata_contig48377.11989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
PLVRSHRAYDEKVNIPDESDQRLPPGWVVRIDDQGRTYYMNTILKATQWQ
RPTQRVPSNRRISVQAVDTPAARSHESFAPPFV
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mRNA from alignment at H-elongata_contig48377:402..1506+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48377.11989.1 ID=mRNA_H-elongata_contig48377.11989.1|Name=mRNA_H-elongata_contig48377.11989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1105bp|location=Sequence derived from alignment at H-elongata_contig48377:402..1506+ (Himanthalia elongata Himel1 dioecious)
CCTCTTGTTCGCTCACACAGAGCTTACGACGAAAAGGTGAGGATGCGATG
AATGGCGGGTATATACACACCTACCTATTTTGTCCTCGGCTGATGATGAT
TTCTGGTGCTAATCTTTTTCGTAAAGCGTTGATGGGTCCTGGTTATGAAC
CGTCTCCGCCCCTACTCCAGGCATATTTTGAATGACTAAGAGCCCTTCTC
CCTCTACCCGAACGCACTAGTCAATGCTCAACTCTCACGACCCCAAATTG
TTTACTTATTTGAGGTCAACATCCCTGATGAAAGCGACCAACGGCTTCCT
CCAGGCTGGGTTGTACGGATCGACGATCAAGGCAGGACATGTGAGAGGAG
GGTTTGTGTGTTGCCGTCGCGATTGTTTTCCGCGAATTGCCATTAGATTT
GCCGAGCATGTCCCTTGCATTATTTAATTCGCAAAATAATGCCTCGCCCT
CCGAGATTAAACCCCCATTGAGATCTACTCCGCAGTAACATCATGCTGCT
GCGCACGTCATCTCCGGCCCTGGGTTGAAAATTTGAATACGTAGTACAGT
ACTGGTACACTTTTCGTCTGTCCAGCTGTTAGTGTAGTGTTTTTCTTGAA
ACACACATGAATTCATTTTAACCTTCCTAACATCCACGCCTTCTTAGCGC
CGTGAGAGATGCAGTCCAGGCGACCAACTATCATCAGGTGTTCGAATGTG
GACATTACTACCTTTGAGCACAAAATCGTCACATACATGTGGTTAATCGT
GTTCCCCAATATTAAGTTAATATGTTTTAACCAATGTGAGATCAGCTTAC
ACTGGGTGGATTCCAGTTGATTCGACTCCACGGTCGTCCAAGTGAGCGTG
AAATTGGTCGAGTCTAGGCTCAATGATTGTAGCGACAATATGATTGCACT
AATTTTCCTACGCATTGAAACCCTTCCTTACCTGTGATACTACTACATCT
GGTGGTGATTCAACCAAGACTATATGAACACAATTCTGAAGGCGACCCAG
TGGCAGCGGCCAACGCAGCGTGTTCCCTCCAACCGCCGCATTAGCGTCCA
AGCGGTTGATACCCCTGCGGCGCGGTCGCATGAAAGTTTTGCGCCACCCT
TTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig48377:402..1506+

>mRNA_H-elongata_contig48377.11989.1 ID=mRNA_H-elongata_contig48377.11989.1|Name=mRNA_H-elongata_contig48377.11989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig48377:402..1506+ (Himanthalia elongata Himel1 dioecious)
CCTCTTGTTCGCTCACACAGAGCTTACGACGAAAAGCCTCTTGTTCGCTC
ACACAGAGCTTACGACGAAAAGGTCAACATCCCTGATGAAAGCGACCAAC
GGCTTCCTCCAGGCTGGGTTGTACGGATCGACGATCAAGGCAGGACATGT
CAACATCCCTGATGAAAGCGACCAACGGCTTCCTCCAGGCTGGGTTGTAC
GGATCGACGATCAAGGCAGGACATACTATATGAACACAATTCTGAAGGCG
ACCCAGTGGCAGCGGCCAACGCAGCGTGTTCCCTCCAACCGCCGCATTAG
CGTCCAAGCGGTTGATACCCCTGCGGCGCGGTCGCATGAAAGTTTTGCGC
CACCCTTTGTCACTATATGAACACAATTCTGAAGGCGACCCAGTGGCAGC
GGCCAACGCAGCGTGTTCCCTCCAACCGCCGCATTAGCGTCCAAGCGGTT
GATACCCCTGCGGCGCGGTCGCATGAAAGTTTTGCGCCACCCTTTGTC
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