mRNA_H-elongata_contig48335.11985.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48335.11985.1
Unique NamemRNA_H-elongata_contig48335.11985.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI)

HSP 1 Score: 553 bits (1426), Expect = 1.460e-195
Identity = 263/309 (85.11%), Postives = 282/309 (91.26%), Query Frame = 1
Query:    7 QVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            +VFSLAPMMEYTDRHMRYLLRLLT RTVLWTEMVPS TI+HN  DLGRFLDYN+EVEHPV+LQIGGSDT+ VREACRLARP+ YDAINLNCGCPS+KVAGKGAFGAALMRSPSLVK+LCLAM+DGAG DTPITVKCRIGVD+DDSYEQLAAFV+EV RG  V HFI+HARKAILGGLSPAQNR IPPLK+++VYRLVKDFP VDFTLNGGVNTYEE     +SCLEQGAHGVMVGRSW+SNPWYWSQ DS LFG  DPGLTRREVL RY EYGERQEKA G  WLACRRRLAKP+WH+FHGEKGGKKFR
Sbjct:   80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEA----VSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGAKDPGLTRREVLERYAEYGERQEKACGEKWLACRRRLAKPIWHMFHGEKGGKKFR 384          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 1.120e-142
Identity = 202/309 (65.37%), Postives = 234/309 (75.73%), Query Frame = 1
Query:    7 QVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            Q  SLAPMMEYTDRHMRY+LRL TK+ V+WTEM+P  +I+HN  DL R L Y+   EHPV+LQ+GGSD   VR AC LARP+ YD INLN GCPS++VAGKGAFGAALMR P LV ++C AMR+G+GG    +VKCRIGVDD+DSY  LA FVD V RGG V  FI+HARKAIL GLSP QNR++PPLK++YVYRLV+DFP + FTLNGGV TY  V       L+ GAHGVMVGR+    PWYWSQ DS++FG TD  L RR+VL  Y EY E  E  AG+ WL  RRRL KPVW+LFHGE GGKKFR
Sbjct:    8 QRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGG-AQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQ----EALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFR 311          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA)

HSP 1 Score: 375 bits (962), Expect = 1.650e-126
Identity = 185/313 (59.11%), Postives = 231/313 (73.80%), Query Frame = 1
Query:    1 PPQVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTD--PGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            P +  SLAPMMEYTDRH+R+LLRLL+KR VL+TEM+ + T+ HN     RFL +N   EHPV+LQ+GGSD   + EA RLA P+ Y+A+NLNCGCPS++V+GKG FGAALMR P  V ELC AM +G+ G  P+TVKCRIGVDDDDSYEQLA FV+ V     V+HF++HARKAILGGLSP QNR +PPLK+ +VYRL ++FP + FTLNGGV +YE+V       L +G HGVM+GR+  + P+YWS VD+++FG+ D  PGLTRREVL RYG Y + +E   G      RR L KPV +LF GE  GK+FR
Sbjct:   21 PDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVA----EHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGP---RMRRLLIKPVHNLFAGEPMGKRFR 326          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK)

HSP 1 Score: 351 bits (901), Expect = 1.640e-116
Identity = 176/310 (56.77%), Postives = 227/310 (73.23%), Query Frame = 1
Query:    7 QVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNG-HDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            ++FSLAPMM+YTDRHMR+L+RLL+K  VL+TEM+ S TI++N  ++LGR+LDY++  EHPV+LQ+GGSD   +R A   A P+ YDA+NLNCGCPS+KVAGKG FGAALMR   LV +LC  M   A  D P+TVK RIGVDD+DSYE L  F++ V     V+HFI+HAR AILGGLSPAQNR+IPPLK++YVY LVKD+P   FT+NGG+  YEE+       L +G HGVMVGR+  ++P+ WSQVD  ++G  +PGLTRRE+L RYGEY +   +  G      R+ L K + + F G++ GKKFR
Sbjct:   50 ELFSLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGM--AAELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIR----EHLGRGVHGVMVGRAINADPYKWSQVDELVYGAANPGLTRREILERYGEYCDEMVELWGP---RVRQTLKKHILNFFVGQRNGKKFR 350          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.770e-106
Identity = 167/312 (53.53%), Postives = 219/312 (70.19%), Query Frame = 1
Query:   13 FSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGL-TRREVLARYGEYGERQEKAA----GSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            FS+APMM+YTDRH RYLLRLL+ + VL+TEMV + T++HN  D+ R+L  +D+VE+PV+LQ+GGSD   +R + + A  ++YD INLNCGCPSDKVAGKG+FGA LM     V +LC AM    G   PITVKCRIGVDD DSYEQLA FV  V + G V+HFI+HARKAILGGLSP +NR IPP+K+++VY+LV DFP + F++NG V TYE+V+      L +G HGVMVGRS    PW WS+VDS+++G     + +RR+VL  Y +Y E++          Y    +R + +   +LF GE  G+KFR
Sbjct:   76 FSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNP-DIDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECG--KPITVKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVS----EHLSRGLHGVMVGRSVIEQPWLWSEVDSRIYGLASDNVPSRRKVLEAYADYAEQEISRMLIKDPKYAPRLKRAILRHTANLFRGEPNGRKFR 380          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A7S0D9F4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D9F4_9EUKA)

HSP 1 Score: 314 bits (805), Expect = 7.650e-102
Identity = 161/310 (51.94%), Postives = 209/310 (67.42%), Query Frame = 1
Query:   13 FSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAM-RDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILG-GLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFRR 936
            FS+APMM+YTDRH R+LLR++TK+  L+TEM+ S+ ++H   D  R L Y+D +EHPV LQ+GGSD   + +  + A P+ YDAINLNCGCPSDKV+G+G+FGAALM+ P     LC +M +  A  DTP++VKCRIGVD++D Y  L  FV  +   GV +HFIIHARKAIL   LSP QNREIPPLK++YV+RLV DFP   F LNGGV + EE        L+ G  GVMVGR   + PWYW  VD +LFG  +P L+RRE+L  Y  Y   + +      ++    + KPV HLF GE+G + +RR
Sbjct:  106 FSVAPMMDYTDRHFRFLLRMITKKAWLYTEMITSEALIHGDAD--RLLRYHDPIEHPVALQLGGSDPDSLAKGVKKALPYAYDAINLNCGCPSDKVSGRGSFGAALMKEPDYTAVLCESMIQQAAATDTPVSVKCRIGVDENDDYHYLKQFVTALGDVGV-RHFIIHARKAILNMNLSPKQNREIPPLKYQYVHRLVVDFPSYSFVLNGGVKSLEEADEF----LKAGVAGVMVGREIINRPWYWGDVDRRLFGVENPRLSRREILGNYSAYAVVEMERDPRLGIST---VLKPVQHLFVGERGARAYRR 405          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A0G4ELS3_VITBC (tRNA-dihydrouridine synthase n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ELS3_VITBC)

HSP 1 Score: 304 bits (779), Expect = 1.650e-98
Identity = 165/320 (51.56%), Postives = 211/320 (65.94%), Query Frame = 1
Query:   13 FSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHD----------LGRFLDYNDE-VEHPVILQIGGSDTSCVREACRLARPFH-YDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTDPGLTRREVLARYGEYGERQ-EKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFR 933
            FS+APMM+YTD+H R+L+RLLT+   L+TEM+ +  + +              + R L  N E +E P +LQ+GGSD   + EA R A  +H +  +NLNCGCPS++VAGKGAFGAALMR P+LV ELC AMR G G   P TVKCRIGVDD DS+E+L  F+  V     V HFIIH+RKAIL GLSP QNR+IPPL +EYVYRLV+ FPG+ FTLNGGV TYE++      C      GVMVGR+    P+YWS+VDS+L+G  + GL RREVLA YG Y + + E+   S   + R  L K   +LF GE   +K++
Sbjct:   21 FSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQGGG--RPTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERC--PTLTGVMVGRAVLDRPFYWSEVDSRLYGRDNLGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYK 336          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A0S3SEQ1_PHAAN (Dus domain-containing protein n=9 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3SEQ1_PHAAN)

HSP 1 Score: 299 bits (766), Expect = 4.850e-96
Identity = 156/307 (50.81%), Postives = 206/307 (67.10%), Query Frame = 1
Query:    4 PQVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWY-WSQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLA-CRRRLAKPVWHLFHGEKG 918
            P  FS+APMME+TD H R L RL++K   L+TEMV ++TI+H   +L RFL Y+ + +HP++LQIGGS+   + +A  LA  + YD INLNCGCPS KVAG G FG +LM +P  V E   A+   A  + P++VKCRIGVDD DSY +L  F+ +V      +HFIIH+RKA+L G+SPA+NR IPPLK+EY Y L++DFP + FT+NGG+ + EEV    L+  E GAHGVMVGR+  +NPW+    VDS ++GT  P LTRR+VL +Y  YGE      G Y      R + KP+ +LFH E G
Sbjct:   64 PPWFSVAPMMEWTDNHYRTLARLISKHAWLYTEMVAAETIVHQKDNLDRFLAYSPD-QHPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAI--AATTNVPVSVKCRIGVDDHDSYSELCDFIYQVSSFSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVEEV----LAAREAGAHGVMVGRAAYTNPWHILGHVDSAIYGTPSPDLTRRQVLEKYLTYGE---SVMGKYGRRPTMRDIVKPLLNLFHSEPG 360          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: V4ME53_EUTSA (Dus domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4ME53_EUTSA)

HSP 1 Score: 298 bits (762), Expect = 1.090e-95
Identity = 152/312 (48.72%), Postives = 211/312 (67.63%), Query Frame = 1
Query:    4 PQVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYW-SQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFRR 936
            P +FS+APMME+TD H R L RL+TK   L+TEM+ +QTI+H  ++L +FL ++ + +HP++LQIGGS+   + +A +LA  + YD INLNCGCPS KVAG G FG +LM +P LV +   A+ D    + P+TVKCRIGVDD DSY++L  FV +V      +HFI+H+RKA+LGG+SPA NR IPPLK+EY Y LV+DFP + FT+NGG+ +   V     + L++GAHGVMVGR+  +NPW     VD+ ++G    GLTRR+VL +Y  YG+      G+     R  L KP+ ++FH E G   ++R
Sbjct:   44 PPLFSIAPMMEWTDNHYRTLARLITKHAWLYTEMIAAQTIVHQQNNLDKFLAFSPQ-QHPIVLQIGGSNVESLTKAAKLADAYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGDAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISMVN----ASLKEGAHGVMVGRAAYNNPWQTLGHVDTAVYGVPSSGLTRRQVLEQYQVYGDAILGTQGNGRPNVRD-LVKPLLNIFHSENGNSLWKR 347          
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Match: A0A087H051_ARAAL (Dus domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H051_ARAAL)

HSP 1 Score: 296 bits (759), Expect = 2.080e-95
Identity = 151/312 (48.40%), Postives = 210/312 (67.31%), Query Frame = 1
Query:    4 PQVFSLAPMMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVEHPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAALMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVHRGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTLNGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYW-SQVDSKLFGTTDPGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKKFRR 936
            P +FS+APMME+TD H R L RL++K   L+TEM+ ++T++H   +L RFL ++   +HP++LQIGGS+   +  A +L+  + YD INLNCGCPS KVAG G FG +LM +P LV E   A+   A  + P+TVKCRIGVDD DSY++L  FV +V      +HFI+H+RKA+LGG+SPA NR IPPLK+EY Y LV+DFP + FT+NGG+ +  EV     + L++GAHGVM+GR+  +NPW     VD+ ++G    GLTRR+VL +Y EYG+      G+     R  + KP+ +LFH E G   ++R
Sbjct:   32 PPLFSVAPMMEWTDNHYRTLARLISKHAWLYTEMIAAETLVHQQTNLDRFLAFSPH-QHPIVLQIGGSNVQNLANAAKLSVAYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAI--AANTNVPVTVKCRIGVDDHDSYDELCDFVHKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSEVN----AALKEGAHGVMIGRAAYNNPWQTLGHVDTTVYGVPSSGLTRRQVLEQYQEYGDSVLGTHGNGRPNVRD-IVKPLLNLFHSENGNSLWKR 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48335.11985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQR5_ECTSI1.460e-19585.11FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
A0A836CCW1_9STRA1.120e-14265.37tRNA-dihydrouridine synthase n=1 Tax=Tribonema min... [more]
A0A4D9D156_9STRA1.650e-12659.11tRNA-dihydrouridine synthase n=3 Tax=Monodopsidace... [more]
A0A7S3USD9_HETAK1.640e-11656.77Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2C7I3_9STRA1.770e-10653.53Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0D9F4_9EUKA7.650e-10251.94Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0G4ELS3_VITBC1.650e-9851.56tRNA-dihydrouridine synthase n=2 Tax=Vitrella bras... [more]
A0A0S3SEQ1_PHAAN4.850e-9650.81Dus domain-containing protein n=9 Tax=Phaseoleae T... [more]
V4ME53_EUTSA1.090e-9548.72Dus domain-containing protein n=2 Tax=Eutrema sals... [more]
A0A087H051_ARAAL2.080e-9548.40Dus domain-containing protein n=1 Tax=Arabis alpin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48335contigH-elongata_contig48335:1318..3560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score541.2
Seed ortholog evalue3.1e-151
Seed eggNOG ortholog2880.D7FQR5
KEGG koko:K05539,ko:K05542
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD binding / catalytic/ tRNA dihydrouridine synthase
Ec32 orthologEc-01_000230.1
Exons5
Model size936
Cds size909
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48335.11985.1prot_H-elongata_contig48335.11985.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48335 1318..3533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.5574374-CDS-H-elongata_contig48335:1317..14791622930796.5574374-CDS-H-elongata_contig48335:1317..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 1318..1479 -
1691679574.1042717-CDS-H-elongata_contig48335:1317..14791691679574.1042717-CDS-H-elongata_contig48335:1317..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 1318..1479 -
1622930796.6000876-CDS-H-elongata_contig48335:1689..17971622930796.6000876-CDS-H-elongata_contig48335:1689..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 1690..1797 -
1691679574.1151946-CDS-H-elongata_contig48335:1689..17971691679574.1151946-CDS-H-elongata_contig48335:1689..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 1690..1797 -
1622930796.617536-CDS-H-elongata_contig48335:2176..23711622930796.617536-CDS-H-elongata_contig48335:2176..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 2177..2371 -
1691679574.126325-CDS-H-elongata_contig48335:2176..23711691679574.126325-CDS-H-elongata_contig48335:2176..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 2177..2371 -
1622930796.6317034-CDS-H-elongata_contig48335:2844..31201622930796.6317034-CDS-H-elongata_contig48335:2844..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 2845..3120 -
1691679574.1348221-CDS-H-elongata_contig48335:2844..31201691679574.1348221-CDS-H-elongata_contig48335:2844..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 2845..3120 -
1622930796.6472805-CDS-H-elongata_contig48335:3365..35331622930796.6472805-CDS-H-elongata_contig48335:3365..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 3366..3533 -
1691679574.1431644-CDS-H-elongata_contig48335:3365..35331691679574.1431644-CDS-H-elongata_contig48335:3365..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48335 3366..3533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.6639254-UTR-H-elongata_contig48335:3533..35601622930796.6639254-UTR-H-elongata_contig48335:3533..3560Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48335 3534..3560 -
1691679574.153908-UTR-H-elongata_contig48335:3533..35601691679574.153908-UTR-H-elongata_contig48335:3533..3560Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48335 3534..3560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48335.11985.1

>prot_H-elongata_contig48335.11985.1 ID=prot_H-elongata_contig48335.11985.1|Name=mRNA_H-elongata_contig48335.11985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp
MMEYTDRHMRYLLRLLTKRTVLWTEMVPSQTIMHNGHDLGRFLDYNDEVE
HPVILQIGGSDTSCVREACRLARPFHYDAINLNCGCPSDKVAGKGAFGAA
LMRSPSLVKELCLAMRDGAGGDTPITVKCRIGVDDDDSYEQLAAFVDEVH
RGGVVQHFIIHARKAILGGLSPAQNREIPPLKHEYVYRLVKDFPGVDFTL
NGGVNTYEEVTPIVLSCLEQGAHGVMVGRSWTSNPWYWSQVDSKLFGTTD
PGLTRREVLARYGEYGERQEKAAGSYWLACRRRLAKPVWHLFHGEKGGKK
FRR
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mRNA from alignment at H-elongata_contig48335:1318..3560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48335.11985.1 ID=mRNA_H-elongata_contig48335.11985.1|Name=mRNA_H-elongata_contig48335.11985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2243bp|location=Sequence derived from alignment at H-elongata_contig48335:1318..3560- (Himanthalia elongata Himel1 dioecious)
CCCCCACAGGTGTTTTCATTGGCCCCGATGATGGAGTACACGGATCGGCA TATGCGGTATCTTCTGCGCCTGTTGACGAAGCGCACGGTGCTCTGGACGG AGATGGTCCCGTCGCAAACAATAATGCATAATGGTCACGACCTCGGAAGA TTCCTGGACTACAATGACGAAGTAGAGCACCCGGTCATTTTGCAGGTGCT TGGGTGATCTAAATGTGCTTACACGAAATGGCTTCGTACGCCAAATATAA ACGCTAGTGGAGATTAAGGCTCCGTGCGGTCGAAGATATGAATAAGGCCT TGTGGATACGTTACTAAGGGAAAGTTTTTATCATGGAAACTCATCTTATG GTAGGGAACAAAACGATGAAGCTCTTGGTCGAGCACCGATCCCACCAAAA TTCGTTCGACTTTGCGCCATCACCCCCGTCGATGCTGCAGATAGGAGGTT CCGATACCTCCTGCGTTCGCGAGGCGTGTCGTCTAGCTCGGCCTTTTCAC TACGACGCCATCAACCTGAACTGTGGTTGCCCTAGCGACAAGGTGGCGGG CAAGGGGGCGTTCGGGGCGGCGCTCATGCGATCTCCGTCACTCGTGAAAG AGCTTTGCCTCGCCATGAGGGATGGGGCGGGCGGAGATACCCCGATAACG GTCAAATGTAGAATAGGCGTCGATGACGACGACTCGTATGAACAATTGGC GGCATTCGTCGATGAGGTGGGCAGTCCCCTTGGAAAGGGAAGCACCCCCA AGCACATGGGATCGTGTATAGACGGTTGGTTTCGATACAGGTTCTGTGCA TCATTTTGGTATCCTTTACAGCTCTGCTGACGGGGGATCAAGACCCCGTT TATCAACTACCTCATGGCGGACCGGGACTCTGATAAATATATTTTTTTAT ATATGAATTCATTCAAACCCTCCGAAAATCCACACCTTTTTTACACCATG AGAGGTGAAGTCCAGAGGACTATGTACCAACTACCATCAGGTTCGAATGC GTACATACTACCTATAGTCACAGAATCGGCGTGTTCAAAGCATTGCGAAA TTCTCGCTTCGTCCATATAAGACAGCAATTGCTCTCTCTGGGTCATCCGG CGTCCTCGACGAGACGCACCCTAAAATTCTTGCCATTTCGATGCGCCAAA CTGCCGCGCGGAAATGCAAACGTCCCCAAATGGCGACAGGTACATCGCGG AGGCGTCGTGCAGCACTTCATCATTCACGCCCGTAAGGCCATTTTGGGAG GTCTCAGCCCGGCGCAGAACAGGGAAATCCCGCCCTTGAAGCACGAATAC GTTTATCGTCTGGTGAAGGATTTCCCGGGCGTCGACTTCACGCTGAACGG AGGCGTCAATACGTACGAAGAGGTAACGCCTATTGTCTAATGTTGCGGCG TAAAGTTGTAAACCCTCACGGAATAGTAACAGTGGCGCAACAAGACCGTG GTAGACAGTCTTGTAGATTTAAGAGGGAGTAAGTGACTATGTGCATAGGA AAATAGAACTGCAGACGCCGACAGATGCCTTTGCGAGAAGCGCAAATCGC GGAATCTAATAACGCACTATAGTTAAAGCGTTTTCGGAAGCTGGGCGTAT CTATGGCGTGATGCCTAAGGTTTTCAATGGTCATATTCATGTATTTTGTG GGACATTTTGTTCTAGCCGAGGATCGAGTGTCTCTTGGCCGGACGAGTTC CGACAAGCTGCCTATCTTTTGGTGTTCCTAAATACGCAGTACTTTTCTCC ATTGGTATCTTAGGTGCTTTCCTGTCTTGAGCAAGGGGCGCACGGGGTCA TGGTGGGGAGATCCTGGACGAGCAATCCGTGGTACTGGAGTCAGGTCGAT TCCAAGTTGTTCGGCACCACGGTGAGTGCTGCAGCAGATAAACCCACGCA GCAGCAAGGGCGAGGGCAAATCTAACGTCACGTTGCGTTTATATTTGCAA TACGCCATCCTTTTTTTGTTCGTTTTACCGTGGCCAGGATGGTAGACGAC GATATTTCACGCCCGCCCGTTATGTCCGCGATATGCTCGTCTTTTGCGCG CGGTATACTTGTACCTCCTTGAATGAAACAGGACCCGGGATTGACGCGTC GGGAGGTACTAGCACGATACGGGGAGTATGGAGAGCGTCAGGAGAAGGCG GCCGGGAGTTACTGGTTGGCGTGCCGCCGAAGGCTAGCCAAGCCAGTCTG GCATCTGTTCCACGGCGAAAAGGGCGGGAAAAAATTTAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig48335:1318..3560-

>mRNA_H-elongata_contig48335.11985.1 ID=mRNA_H-elongata_contig48335.11985.1|Name=mRNA_H-elongata_contig48335.11985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig48335:1318..3560- (Himanthalia elongata Himel1 dioecious)
ATGATGGAGTACACGGATCGGCATATGCGGTATCTTCTGCGCCTGTTGAC
GAAGCGCACGGTGCTCTGGACGGAGATGGTCCCGTCGCAAACAATAATGC
ATAATGGTCACGACCTCGGAAGATTCCTGGACTACAATGACGAAGTAGAG
CACCCGGTCATTTTGCAGATGATGGAGTACACGGATCGGCATATGCGGTA
TCTTCTGCGCCTGTTGACGAAGCGCACGGTGCTCTGGACGGAGATGGTCC
CGTCGCAAACAATAATGCATAATGGTCACGACCTCGGAAGATTCCTGGAC
TACAATGACGAAGTAGAGCACCCGGTCATTTTGCAGATAGGAGGTTCCGA
TACCTCCTGCGTTCGCGAGGCGTGTCGTCTAGCTCGGCCTTTTCACTACG
ACGCCATCAACCTGAACTGTGGTTGCCCTAGCGACAAGGTGGCGGGCAAG
GGGGCGTTCGGGGCGGCGCTCATGCGATCTCCGTCACTCGTGAAAGAGCT
TTGCCTCGCCATGAGGGATGGGGCGGGCGGAGATACCCCGATAACGGTCA
AATGTAGAATAGGCGTCGATGACGACGACTCGTATGAACAATTGGCGGCA
TTCGTCGATGAGATAGGAGGTTCCGATACCTCCTGCGTTCGCGAGGCGTG
TCGTCTAGCTCGGCCTTTTCACTACGACGCCATCAACCTGAACTGTGGTT
GCCCTAGCGACAAGGTGGCGGGCAAGGGGGCGTTCGGGGCGGCGCTCATG
CGATCTCCGTCACTCGTGAAAGAGCTTTGCCTCGCCATGAGGGATGGGGC
GGGCGGAGATACCCCGATAACGGTCAAATGTAGAATAGGCGTCGATGACG
ACGACTCGTATGAACAATTGGCGGCATTCGTCGATGAGGTACATCGCGGA
GGCGTCGTGCAGCACTTCATCATTCACGCCCGTAAGGCCATTTTGGGAGG
TCTCAGCCCGGCGCAGAACAGGGAAATCCCGCCCTTGAAGCACGAATACG
TTTATCGTCTGGTGAAGGATTTCCCGGGCGTCGACTTCACGCTGAACGGA
GGCGTCAATACGTACGAAGAGGTAACGCCTATTGTACATCGCGGAGGCGT
CGTGCAGCACTTCATCATTCACGCCCGTAAGGCCATTTTGGGAGGTCTCA
GCCCGGCGCAGAACAGGGAAATCCCGCCCTTGAAGCACGAATACGTTTAT
CGTCTGGTGAAGGATTTCCCGGGCGTCGACTTCACGCTGAACGGAGGCGT
CAATACGTACGAAGAGGTAACGCCTATTGTGCTTTCCTGTCTTGAGCAAG
GGGCGCACGGGGTCATGGTGGGGAGATCCTGGACGAGCAATCCGTGGTAC
TGGAGTCAGGTCGATTCCAAGTTGTTCGGCACCACGGTGCTTTCCTGTCT
TGAGCAAGGGGCGCACGGGGTCATGGTGGGGAGATCCTGGACGAGCAATC
CGTGGTACTGGAGTCAGGTCGATTCCAAGTTGTTCGGCACCACGGACCCG
GGATTGACGCGTCGGGAGGTACTAGCACGATACGGGGAGTATGGAGAGCG
TCAGGAGAAGGCGGCCGGGAGTTACTGGTTGGCGTGCCGCCGAAGGCTAG
CCAAGCCAGTCTGGCATCTGTTCCACGGCGAAAAGGGCGGGAAAAAATTT
AGGCGAGACCCGGGATTGACGCGTCGGGAGGTACTAGCACGATACGGGGA
GTATGGAGAGCGTCAGGAGAAGGCGGCCGGGAGTTACTGGTTGGCGTGCC
GCCGAAGGCTAGCCAAGCCAGTCTGGCATCTGTTCCACGGCGAAAAGGGC
GGGAAAAAATTTAGGCGA
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