mRNA_H-elongata_contig48227.11971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48227.11971.1
Unique NamemRNA_H-elongata_contig48227.11971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: D8LTG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTG6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.680e-38
Identity = 76/95 (80.00%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:  361 SVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            +VG+ GSDKRTRN+LPNGFYKFLVHNVKELELLLMHNR               KYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA
Sbjct:   58 NVGY-GSDKRTRNILPNGFYKFLVHNVKELELLLMHNR---------------KYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 136
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A835YGQ7_9STRA (Ribosomal protein L32e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGQ7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.280e-30
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:  361 SVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            ++G+ GS+K+TRN+LPNGFYKFLVHNVK+LELL+MHNR               KYAAEIAHNVS+RKRKEIVERA QL I+VTNA A+L  EEDA
Sbjct:   58 NIGY-GSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNR---------------KYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 136
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A7S2XAB1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAB1_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 5.700e-30
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:  358 SSVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEED 642
            ++VG+ GS+K+TRNLLPNGFYKFLVHNVKELELL+MHNR               KY AE+AH VSS+KRKEIVERA QL I+VTNA AKL AEED
Sbjct:   41 ANVGY-GSNKKTRNLLPNGFYKFLVHNVKELELLMMHNR---------------KYCAEVAHAVSSKKRKEIVERADQLGIKVTNANAKLRAEED 119
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A7S0L5M3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5M3_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.560e-27
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:  361 SVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            S+G+ GSDK TRNLLPNGFYKFLVHN KELE+L+MHNR               KY AEIAHNVSS+ RK IVERA QL+I+VTNA AKL  EE+A
Sbjct:   69 SIGY-GSDKATRNLLPNGFYKFLVHNPKELEMLMMHNR---------------KYCAEIAHNVSSKTRKVIVERANQLNIKVTNAIAKLRVEENA 147
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A7S1UMM3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMM3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.760e-27
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  352 VRSSVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            V   VG+ GSDK+TRN+LPNGFYKFLVHNV ELELL+MHN+                Y AEIA  VS+RKRKEIVERA QL I+VTNA AKL+AE++A
Sbjct:   46 VEVKVGY-GSDKKTRNMLPNGFYKFLVHNVNELELLMMHNKT---------------YCAEIAKGVSARKRKEIVERAEQLAIKVTNASAKLAAEDEA 127
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A6U4LKX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LKX9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.280e-27
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  352 VRSSVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            V   VG+ GSDK+TRN+LPNGFYKFLVHNV ELELL+MHN+                Y AEIA  VS+RKRKEIVERA QL I+VTNA AKL+AE++A
Sbjct:   55 VEVKVGY-GSDKKTRNMLPNGFYKFLVHNVNELELLMMHNKT---------------YCAEIAKGVSARKRKEIVERAEQLAIKVTNASAKLAAEDEA 136
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: W7T4V3_9STRA (Ribosomal protein l32 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4V3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.310e-27
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:  361 SVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            ++G+ GSD +TRNLLPNGFYKF+V+N KE+ELLL+HNR               KY+AEIAHNVSSRKRK IVE+A QL ++VTNA AKL AEEDA
Sbjct:   59 NIGY-GSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNR---------------KYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A7S0EVQ0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EVQ0_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 4.170e-27
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:  361 SVGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEED 642
            +VG+ GSDKRTR++LP+GFYKF+VHNVKELE+L+M NR               KYAAEIAHNVS+RKRKEIVERA QL+I+VTNA A++ +EE+
Sbjct:   55 NVGY-GSDKRTRHMLPSGFYKFVVHNVKELEVLMMQNR---------------KYAAEIAHNVSARKRKEIVERANQLNIKVTNATARVRSEEN 132
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A7S2SH78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH78_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.540e-27
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:  364 VGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            VG+ GSDKRTRNLLPNGFYKFLV NV++LELL+MHNR               KY AEIAHNVS+ KR+EIV RA QL I+VTNA AKL  EEDA
Sbjct:   59 VGY-GSDKRTRNLLPNGFYKFLVSNVEDLELLMMHNR---------------KYCAEIAHNVSTLKRQEIVTRANQLAIKVTNANAKLREEEDA 136
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BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Match: A0A482UR32_9ARCH (50S ribosomal protein L32e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UR32_9ARCH)

HSP 1 Score: 108 bits (269), Expect = 6.600e-27
Identity = 60/94 (63.83%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:  364 VGFVGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 645
            + F GSDK TRNLLPNGFYKF+VHN KELE+LLMHNR               KY AEIAHNVSSR RK IVERA QL+++VTNA AKL   E A
Sbjct:   21 IFFSGSDKATRNLLPNGFYKFVVHNAKELEMLLMHNR---------------KYCAEIAHNVSSRTRKLIVERAEQLNVKVTNAVAKLRKVESA 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48227.11971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTG6_ECTSI1.680e-3880.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGQ7_9STRA2.280e-3066.32Ribosomal protein L32e n=1 Tax=Tribonema minus Tax... [more]
A0A7S2XAB1_9EUKA5.700e-3067.37Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0L5M3_9EUKA1.560e-2765.26Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1UMM3_9STRA1.760e-2762.24Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4LKX9_9STRA2.280e-2762.24Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7T4V3_9STRA3.310e-2763.16Ribosomal protein l32 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S0EVQ0_9EUKA4.170e-2762.77Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2SH78_9STRA4.540e-2765.96Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A482UR32_9ARCH6.600e-2763.8350S ribosomal protein L32e n=1 Tax=archaeon TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48227contigH-elongata_contig48227:2643..3482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue7.8e-31
Seed eggNOG ortholog2880.D8LTG6
Preferred nameRPL32
KEGG koko:K02912,ko:K03132,ko:K04805,ko:K06990,ko:K09329,ko:K09503,ko:K17593,ko:K17822
KEGG TC1.A.9.1
KEGG Pathwayko03010,ko03022,ko04080,ko04141,ko04725,map03010,map03022,map04080,map04141,map04725
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0001889,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030867,GO:0031090,GO:0031099,GO:0031100,GO:0031960,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048545,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051384,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097327,GO:0097421,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.60s ribosomal protein
EggNOG OGsCOG1717@1,KOG0878@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03000,ko03011,ko03021,ko03029,ko03036,ko03110,ko04040,ko04121,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48227.11971.1prot_H-elongata_contig48227.11971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48227 2643..3176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.289382-CDS-H-elongata_contig48227:2642..28171622930795.289382-CDS-H-elongata_contig48227:2642..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48227 2643..2817 -
1691679573.6480284-CDS-H-elongata_contig48227:2642..28171691679573.6480284-CDS-H-elongata_contig48227:2642..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48227 2643..2817 -
1622930795.3064742-CDS-H-elongata_contig48227:3009..31761622930795.3064742-CDS-H-elongata_contig48227:3009..3176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48227 3010..3176 -
1691679573.660774-CDS-H-elongata_contig48227:3009..31761691679573.660774-CDS-H-elongata_contig48227:3009..3176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48227 3010..3176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.3268995-UTR-H-elongata_contig48227:3176..34821622930795.3268995-UTR-H-elongata_contig48227:3176..3482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48227 3177..3482 -
1691679573.6706152-UTR-H-elongata_contig48227:3176..34821691679573.6706152-UTR-H-elongata_contig48227:3176..3482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48227 3177..3482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48227.11971.1

>prot_H-elongata_contig48227.11971.1 ID=prot_H-elongata_contig48227.11971.1|Name=mRNA_H-elongata_contig48227.11971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MSEESFSSVYRIPRNVRSSVGFVGSDKRTRNLLPNGFYKFLVHNVKELEL
LLMHNRVRSSSSPMSLIDACRKYAAEIAHNVSSRKRKEIVERAGQLHIRV
TNAGAKLSAEEDA*
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mRNA from alignment at H-elongata_contig48227:2643..3482-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48227.11971.1 ID=mRNA_H-elongata_contig48227.11971.1|Name=mRNA_H-elongata_contig48227.11971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig48227:2643..3482- (Himanthalia elongata Himel1 dioecious)
CGGAAAACGAGAGGATCCCGGGAGTACGCACTATATTCAGCCTGGGTTGA
ATGAGCAGGCTGACGCAGGACGGGACTGCCGAAACCGTCTCGCGAGACCA
AAGTATCAGGCGCGAGCGGGGACGGGAAGATTCATTTTCTCTGTTCAAAT
GACCACAAGCAGGAGGCAACCAAATCCAGTTGATCCTTACTCTGCTACAT
GTGATGACGTCATGACCACACTTGAAGGTAGCAGCGATGAGCACTCATTA
CGTGTTTGTTACGGTAGGTTTTCGTTTTGCGTGGGCTGAAGTTTGCTAAA
ACCCGCATGTCTGAAGAATCTTTCTCTTCCGTTTACCGTATACCGCGCAA
TGTTCGATCCTCCGTGGGGTTTGTAGGTTCTGACAAGCGCACCCGTAACC
TCCTTCCTAACGGCTTCTACAAGTTCCTGGTCCACAACGTGAAAGAGCTC
GAGCTTCTCCTTATGCACAACAGGTAAACTACCCTCCTGGATAAAACATC
TGCCACCCGGTTTTTGACAACGGTGGTTACTTGACCATACGGTTGTTGTA
CTGTGTTCACTTCCGGTTCAGGGCTTTCGTAGAGGTGGGGACAAGCTTTC
CGGGTTTAGGCTGATGTAGTCGTGTCGCTTCGCTAATACAACTGTTACCC
TGGAGTGCCTTAAAGAGTGCGTTCGTCCTCCTCCCCCATGTCTCTAATCG
ATGCTTGCAGGAAGTACGCGGCAGAGATCGCCCACAACGTTTCTTCGCGG
AAGCGCAAGGAGATTGTAGAGCGGGCGGGACAGCTGCACATCCGTGTTAC
GAACGCTGGCGCCAAGCTCAGCGCCGAGGAAGATGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig48227:2643..3482-

>mRNA_H-elongata_contig48227.11971.1 ID=mRNA_H-elongata_contig48227.11971.1|Name=mRNA_H-elongata_contig48227.11971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig48227:2643..3482- (Himanthalia elongata Himel1 dioecious)
ATGTCTGAAGAATCTTTCTCTTCCGTTTACCGTATACCGCGCAATGTTCG
ATCCTCCGTGGGGTTTGTAGGTTCTGACAAGCGCACCCGTAACCTCCTTC
CTAACGGCTTCTACAAGTTCCTGGTCCACAACGTGAAAGAGCTCGAGCTT
CTCCTTATGCACAACAGATGTCTGAAGAATCTTTCTCTTCCGTTTACCGT
ATACCGCGCAATGTTCGATCCTCCGTGGGGTTTGTAGGTTCTGACAAGCG
CACCCGTAACCTCCTTCCTAACGGCTTCTACAAGTTCCTGGTCCACAACG
TGAAAGAGCTCGAGCTTCTCCTTATGCACAACAGAGTGCGTTCGTCCTCC
TCCCCCATGTCTCTAATCGATGCTTGCAGGAAGTACGCGGCAGAGATCGC
CCACAACGTTTCTTCGCGGAAGCGCAAGGAGATTGTAGAGCGGGCGGGAC
AGCTGCACATCCGTGTTACGAACGCTGGCGCCAAGCTCAGCGCCGAGGAA
GATGCGTAAAGTGCGTTCGTCCTCCTCCCCCATGTCTCTAATCGATGCTT
GCAGGAAGTACGCGGCAGAGATCGCCCACAACGTTTCTTCGCGGAAGCGC
AAGGAGATTGTAGAGCGGGCGGGACAGCTGCACATCCGTGTTACGAACGC
TGGCGCCAAGCTCAGCGCCGAGGAAGATGCGTAA
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