mRNA_H-elongata_contig48191.11967.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE) HSP 1 Score: 360 bits (924), Expect = 2.600e-119 Identity = 188/262 (71.76%), Postives = 212/262 (80.92%), Query Frame = 1
Query: 1 RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGK-HAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
R+FKK DT LKESLKKESIAS D G SG G+VRVD+TYRDPEMPEVEVDFE+QVKG+RYGQDYIPV +DEGSLKLP+E PSLKVLGF P+SSV RH YMD+TFVV+ EPGS Q+AGA+SSL AMRNLDQ+A+ RFVR+K+ PWLG LIPD TGV R LFQK+PF EDVR + F SF+K P SR PS+EQKR+S SLVEAMMIPEV G GVRD LVL+PVRQGINGAKVARAI PEC++P V PSVK
Sbjct: 219 RFFKKTDTGLKESLKKESIASYD-----PAGGSGSDGKVRVDKTYRDPEMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAKPPPSRTPSDEQKRVSASLVEAMMIPEVDGHIQGGVRDCLVLDPVRQGINGAKVARAIDPECELPEVNPSVK 475
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A200QB51_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QB51_9MAGN) HSP 1 Score: 134 bits (337), Expect = 3.940e-32 Identity = 77/220 (35.00%), Postives = 132/220 (60.00%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKN-NNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCV 768
++VD Y+ E P V E ++KGYRYG +P+ P + ++K E S+K+LGF AS++ RH YM + + +AEPG+A++ A+S+LVRAM+ ++++A++R V K+ +N +GAL P+P+ + + P + F LPF+EDVR++ F SFS P S +P+E Q+ + +LV + + GK ++ NPV + ++ P+ +P +
Sbjct: 258 IKVDYEYKRVEDPTKVVPPEQRIKGYRYGPQVVPISPAEWDAVKFKPEK-SVKLLGFTNASNIMRHYYMKDVSIFIAEPGNAKATLAISALVRAMKEMNKVAILRCVFKQGQSNVVVGALTPNPSNLENIPDSFYFNVLPFAEDVREFQFPSFSNFPPSLQPNERQQEAADNLVMRLDLAP-PGKEEALQPDFTPNPVLERFYRVLELKSKKPDAHVPAL 475
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A4Y7J9E8_PAPSO (ATP-dependent DNA helicase 2 subunit KU80 n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J9E8_PAPSO) HSP 1 Score: 130 bits (327), Expect = 9.250e-31 Identity = 79/225 (35.11%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
++VD Y+ E P + E ++KGYRYG +P+ + ++K E S+K+LGF AS++ RH YM + + +AEPG+A++ AVS+LVRAM ++++A++R V R+ + +GAL P+P+ V + P + F LPF+EDVR++ F SFS P S +P+E+Q+ + +LV M+ GK +R NPV + ++ P+ ++P + ++K
Sbjct: 272 IKVDYEYKGVEDPTKVIPPEQRIKGYRYGPQVVPISSDEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVSIFIAEPGNAKATVAVSALVRAMAEMNKVAILRCVWRQGQASVVVGALTPNPSNVENIPDSFYFNVLPFAEDVREFQFPSFSNLPLSMQPNEKQQEAADNLV-MMLDLAPPGKEEILRPEFTPNPVLERFYRVLEIKSKKPDAEVPPLDTTLK 494
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A835IGM5_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IGM5_9MAGN) HSP 1 Score: 126 bits (316), Expect = 2.870e-29 Identity = 80/219 (36.53%), Postives = 125/219 (57.08%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMP 762
V+VD Y+ E P V E ++KGYRYG +P+ + ++K PE+G +++LGF AS++ RH YM + ++ +AEPG+ +A AVS+ VRAM+ ++++A+VR V R+ N LG L P+ + + P + F LPF+EDVR++ F SFSK P S P+E Q+ + LV M+ GK + NPV + + P+ D+P
Sbjct: 260 VKVDYEYKGTEDPNKIVPPEQRIKGYRYGPQVVPISSAELEAIKFKPEKG--VRLLGFSNASNILRHYYMKDVYIFIAEPGNMNAAVAVSAFVRAMKEMNKVAIVRCVWRQGQGNVVLGVLTPNISNRENIPDSFFFNVLPFAEDVREFQFPSFSKFPPSWLPNERQQEAADKLV-MMLDLAPPGKEEVLLPDFTPNPVLERFYRLLELKTRKPDADVP 475
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A662YG02_9STRA (Ku domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG02_9STRA) HSP 1 Score: 124 bits (312), Expect = 9.440e-29 Identity = 89/259 (34.36%), Postives = 130/259 (50.19%), Query Frame = 1
Query: 13 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPT----GVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRK--PSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
K T +L+KES S + VGG+V++DR Y P+ P+ EV + QVK YRYG + +P D K E SLKVLGF+ + + + T + +AEPG +A +++L+ AMR L Q+A+ RFV +KN P + ALIP G + W Q+LPF ED+R Y F RK P+EEQ+ ++ LV+++ I + K G NPV + A RA+ +P +P
Sbjct: 204 KTKTATLPTLQKESQTSYE---------KDVGGKVKLDRRYTSPQHPDEEVPPDQQVKAYRYGAEKVPFSSADVEFFKFQTEK-SLKVLGFLDQAQLSHSKFAGGTDIFIAEPGKPHAAQCLAALIDAMRELQQVAIARFVARKNAAPKIVALIPHAPCASRGENYYALWS-QQLPFDEDLRSYEFAPLK----CRKFTPTEEQQSLADKLVDSLSIRDDKADEVGA----CFNPVIRRFFHAASMRAMDESVGVPVLP 443
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A3R7I120_9STRA (VWFA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7I120_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.940e-28 Identity = 86/257 (33.46%), Postives = 128/257 (49.81%), Query Frame = 1
Query: 13 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP----DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
K TT +L KES S + A G+V++DR Y P P+ +V + QVK YRYGQ+ +P D K E SLKVLGF+ + ++ T + +AEPG ++ ++L+ AMR + Q+A+ RFV +KN P + ALIP D + W Q+LP+ ED+R Y F S P++EQ+ ++ LV+++ I + K G L NPV + A RA+ +P VP
Sbjct: 276 KTKTTTLPTLSKESQVSYEKETA---------GKVKLDRRYTSPHQPDTDVAPDQQVKAYRYGQEKVPFASADVEFFKFQTEK-SLKVLGFLDQEQLNHSKFVGGTDIFIAEPGKPHASECFAALIEAMREMQQVAIARFVARKNAAPKIVALIPHAPSDSRSENYYAMWS-QQLPYEEDIRSYEFAPLECRKFS--PTDEQQALADKLVDSLSIRDDKADEVG----LCFNPVIRRFFHAVSMRAMDESTGVPTVP 515
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: K3X675_GLOUD (VWFA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X675_GLOUD) HSP 1 Score: 123 bits (309), Expect = 2.670e-28 Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 1
Query: 109 GRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP-DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
G+V+VDR Y P+ P+ EV + QVK YRYG++ +P D KL E SLKVLGF+ + R + D T + +AEPG +A +++L+ M+ LDQ+A+ RFV +KN P + ALIP P ++ + Q+LP+ ED+R Y F S +PS+ Q+ + LV+++ + + K G NPV A RA + +P +P
Sbjct: 308 GKVKVDRRYTTPQNPDEEVAPDQQVKAYRYGKEKVPFSSADVEFFKLQTEK-SLKVLGFLDKKLLNRWKFTDGTDIFIAEPGKPHAAQCLAALIEGMKELDQVAIARFVARKNAAPKIVALIPHSPGSADNYYAFWSQQLPYEEDLRSYEFAPLKM--SKHRPSDAQQAAADKLVDSLSVRDDKVDEFGS----CFNPVIHRFFHAVSTRAFQEDAAVPPLP 522
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: G9I491_PINSY (ATP-dependent DNA helicase 2 subunit KU80 n=2 Tax=Pinus sylvestris TaxID=3349 RepID=G9I491_PINSY) HSP 1 Score: 123 bits (308), Expect = 3.390e-28 Identity = 72/226 (31.86%), Postives = 132/226 (58.41%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
V++D Y+ E P+ + E ++KG+ YG +P+ ++ +LK PE+G +K+LGF ASS+PRH YM +T +++AEPG+ ++ AVS++ RAM ++A++R V R++ N LG L P+ + ++ + F +PF ED+R++ F SF P+S++P+ Q+ + + V+ + + G+ + L LNP+ + ++ + D+P V +VK
Sbjct: 265 VKMDIEYKSREEPDKTIPPEQRIKGFNYGPQVVPISMAEQETLKFKPEKG--VKLLGFTDASSIPRHSYMKDTSILIAEPGNTKAILAVSAVARAMEETKKVAILRCVWRERQANVILGVLTPNISNKSNAADSFYFNIIPFVEDIREFPFASFDSFPASQQPNIVQQEAADNFVQMLDLAP-PGREEALLPELTLNPILERFYSFLDTKSRRSDADVPPVDDAVK 487
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: F0X1I1_9STRA (Uncharacterized protein AlNc14C624G12272 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1I1_9STRA) HSP 1 Score: 122 bits (306), Expect = 6.270e-28 Identity = 80/220 (36.36%), Postives = 122/220 (55.45%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPD-PTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
VR DR Y DP+ P+ EV + ++K Y YG + +P D + K E SLK+LGFV A SV +M T V +++P +A ++LV AMR +Q+A+ RFV +KN P + ALIP P + + Q+LPF ED+RD+ F S + S PS+EQ++I+ SLV+ + + + + + NPV + + VARAI P+ + +P
Sbjct: 293 VRQDRRYMDPDSPDEEVPPDQRIKAYTYGHESVPFSSADLEAFKFHTEK-SLKLLGFVDAKSVHPANFMVNTNVFLSDPTKKNAATCFATLVNAMRMKNQVAIARFVPRKNAAPKVIALIPHIPAKEIPYHAFWSQQLPFEEDLRDFEFPSILQDNSKSIPSKEQQQIANSLVDGLSVDDDE-----INPRTCYNPVLRRFYDSVVARAIDPDAGISPLP 506
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A2K2DHK7_BRADI (Ku domain-containing protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DHK7_BRADI) HSP 1 Score: 121 bits (303), Expect = 6.980e-28 Identity = 72/199 (36.18%), Postives = 119/199 (59.80%), Query Frame = 1
Query: 115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPV 702
V+VD Y+ P+ V + ++KGY YG +P+ + ++K PE+G +K+LGF SS+PRH +M + V EPG+ ++ AVS++ RAM+ ++++A++R V R+ N G L P+ + V + P + F LPFSED+R++ F SFS PSS +P+EEQ+ + SLV+ + + G+ +R NP+
Sbjct: 262 VKVDFEYKSILEPDTVVPPDQRIKGYLYGPQVVPISSAEWEAVKFKPEKG--VKLLGFADRSSIPRHYFMKDVNSFVPEPGNKKATVAVSAIARAMQEMNKVAILRCVWRQGQGNVAFGVLTPNISSVNNVPDSFFFNILPFSEDIREFQFRSFSSLPSSSQPTEEQQEAADSLVKMLDLAP-PGREEILRPDFTPNPM 457 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48191.11967.1 >prot_H-elongata_contig48191.11967.1 ID=prot_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMback to top mRNA from alignment at H-elongata_contig48191:149..3594- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48191.11967.1 ID=mRNA_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-elongata_contig48191:149..3594- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48191:149..3594- >mRNA_H-elongata_contig48191.11967.1 ID=mRNA_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig48191:149..3594- (Himanthalia elongata Himel1 dioecious)back to top |