mRNA_H-elongata_contig48191.11967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48191.11967.1
Unique NamemRNA_H-elongata_contig48191.11967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 2.600e-119
Identity = 188/262 (71.76%), Postives = 212/262 (80.92%), Query Frame = 1
Query:    1 RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGK-HAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
            R+FKK DT LKESLKKESIAS D       G SG  G+VRVD+TYRDPEMPEVEVDFE+QVKG+RYGQDYIPV  +DEGSLKLP+E PSLKVLGF P+SSV RH YMD+TFVV+ EPGS Q+AGA+SSL  AMRNLDQ+A+ RFVR+K+  PWLG LIPD TGV    R LFQK+PF EDVR + F SF+K P SR PS+EQKR+S SLVEAMMIPEV G    GVRD LVL+PVRQGINGAKVARAI PEC++P V PSVK
Sbjct:  219 RFFKKTDTGLKESLKKESIASYD-----PAGGSGSDGKVRVDKTYRDPEMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAKPPPSRTPSDEQKRVSASLVEAMMIPEVDGHIQGGVRDCLVLDPVRQGINGAKVARAIDPECELPEVNPSVK 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A200QB51_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QB51_9MAGN)

HSP 1 Score: 134 bits (337), Expect = 3.940e-32
Identity = 77/220 (35.00%), Postives = 132/220 (60.00%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKN-NNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCV 768
            ++VD  Y+  E P   V  E ++KGYRYG   +P+ P +  ++K   E  S+K+LGF  AS++ RH YM +  + +AEPG+A++  A+S+LVRAM+ ++++A++R V K+  +N  +GAL P+P+ + + P  + F  LPF+EDVR++ F SFS  P S +P+E Q+  + +LV  + +    GK   ++     NPV +        ++  P+  +P +
Sbjct:  258 IKVDYEYKRVEDPTKVVPPEQRIKGYRYGPQVVPISPAEWDAVKFKPEK-SVKLLGFTNASNIMRHYYMKDVSIFIAEPGNAKATLAISALVRAMKEMNKVAILRCVFKQGQSNVVVGALTPNPSNLENIPDSFYFNVLPFAEDVREFQFPSFSNFPPSLQPNERQQEAADNLVMRLDLAP-PGKEEALQPDFTPNPVLERFYRVLELKSKKPDAHVPAL 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A4Y7J9E8_PAPSO (ATP-dependent DNA helicase 2 subunit KU80 n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J9E8_PAPSO)

HSP 1 Score: 130 bits (327), Expect = 9.250e-31
Identity = 79/225 (35.11%), Postives = 134/225 (59.56%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
            ++VD  Y+  E P   +  E ++KGYRYG   +P+   +  ++K   E  S+K+LGF  AS++ RH YM +  + +AEPG+A++  AVS+LVRAM  ++++A++R V R+   +  +GAL P+P+ V + P  + F  LPF+EDVR++ F SFS  P S +P+E+Q+  + +LV  M+     GK   +R     NPV +        ++  P+ ++P +  ++K
Sbjct:  272 IKVDYEYKGVEDPTKVIPPEQRIKGYRYGPQVVPISSDEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVSIFIAEPGNAKATVAVSALVRAMAEMNKVAILRCVWRQGQASVVVGALTPNPSNVENIPDSFYFNVLPFAEDVREFQFPSFSNLPLSMQPNEKQQEAADNLV-MMLDLAPPGKEEILRPEFTPNPVLERFYRVLEIKSKKPDAEVPPLDTTLK 494          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A835IGM5_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IGM5_9MAGN)

HSP 1 Score: 126 bits (316), Expect = 2.870e-29
Identity = 80/219 (36.53%), Postives = 125/219 (57.08%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMP 762
            V+VD  Y+  E P   V  E ++KGYRYG   +P+   +  ++K  PE+G  +++LGF  AS++ RH YM + ++ +AEPG+  +A AVS+ VRAM+ ++++A+VR V R+   N  LG L P+ +   + P  + F  LPF+EDVR++ F SFSK P S  P+E Q+  +  LV  M+     GK   +      NPV +        +   P+ D+P
Sbjct:  260 VKVDYEYKGTEDPNKIVPPEQRIKGYRYGPQVVPISSAELEAIKFKPEKG--VRLLGFSNASNILRHYYMKDVYIFIAEPGNMNAAVAVSAFVRAMKEMNKVAIVRCVWRQGQGNVVLGVLTPNISNRENIPDSFFFNVLPFAEDVREFQFPSFSKFPPSWLPNERQQEAADKLV-MMLDLAPPGKEEVLLPDFTPNPVLERFYRLLELKTRKPDADVP 475          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A662YG02_9STRA (Ku domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG02_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.440e-29
Identity = 89/259 (34.36%), Postives = 130/259 (50.19%), Query Frame = 1
Query:   13 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPDPT----GVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRK--PSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
            K  T    +L+KES  S +           VGG+V++DR Y  P+ P+ EV  + QVK YRYG + +P    D    K   E  SLKVLGF+  + +    +   T + +AEPG   +A  +++L+ AMR L Q+A+ RFV +KN  P + ALIP       G   +  W  Q+LPF ED+R Y F         RK  P+EEQ+ ++  LV+++ I + K    G       NPV +    A   RA+     +P +P
Sbjct:  204 KTKTATLPTLQKESQTSYE---------KDVGGKVKLDRRYTSPQHPDEEVPPDQQVKAYRYGAEKVPFSSADVEFFKFQTEK-SLKVLGFLDQAQLSHSKFAGGTDIFIAEPGKPHAAQCLAALIDAMRELQQVAIARFVARKNAAPKIVALIPHAPCASRGENYYALWS-QQLPFDEDLRSYEFAPLK----CRKFTPTEEQQSLADKLVDSLSIRDDKADEVGA----CFNPVIRRFFHAASMRAMDESVGVPVLP 443          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A3R7I120_9STRA (VWFA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7I120_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.940e-28
Identity = 86/257 (33.46%), Postives = 128/257 (49.81%), Query Frame = 1
Query:   13 KVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP----DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
            K  TT   +L KES  S +   A         G+V++DR Y  P  P+ +V  + QVK YRYGQ+ +P    D    K   E  SLKVLGF+    +    ++  T + +AEPG   ++   ++L+ AMR + Q+A+ RFV +KN  P + ALIP    D      +  W  Q+LP+ ED+R Y F        S  P++EQ+ ++  LV+++ I + K    G    L  NPV +    A   RA+     +P VP
Sbjct:  276 KTKTTTLPTLSKESQVSYEKETA---------GKVKLDRRYTSPHQPDTDVAPDQQVKAYRYGQEKVPFASADVEFFKFQTEK-SLKVLGFLDQEQLNHSKFVGGTDIFIAEPGKPHASECFAALIEAMREMQQVAIARFVARKNAAPKIVALIPHAPSDSRSENYYAMWS-QQLPYEEDIRSYEFAPLECRKFS--PTDEQQALADKLVDSLSIRDDKADEVG----LCFNPVIRRFFHAVSMRAMDESTGVPTVP 515          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: K3X675_GLOUD (VWFA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X675_GLOUD)

HSP 1 Score: 123 bits (309), Expect = 2.670e-28
Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 1
Query:  109 GRVRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIP-DPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
            G+V+VDR Y  P+ P+ EV  + QVK YRYG++ +P    D    KL  E  SLKVLGF+    + R  + D T + +AEPG   +A  +++L+  M+ LDQ+A+ RFV +KN  P + ALIP  P    ++  +  Q+LP+ ED+R Y F       S  +PS+ Q+  +  LV+++ + + K    G       NPV      A   RA   +  +P +P
Sbjct:  308 GKVKVDRRYTTPQNPDEEVAPDQQVKAYRYGKEKVPFSSADVEFFKLQTEK-SLKVLGFLDKKLLNRWKFTDGTDIFIAEPGKPHAAQCLAALIEGMKELDQVAIARFVARKNAAPKIVALIPHSPGSADNYYAFWSQQLPYEEDLRSYEFAPLKM--SKHRPSDAQQAAADKLVDSLSVRDDKVDEFGS----CFNPVIHRFFHAVSTRAFQEDAAVPPLP 522          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: G9I491_PINSY (ATP-dependent DNA helicase 2 subunit KU80 n=2 Tax=Pinus sylvestris TaxID=3349 RepID=G9I491_PINSY)

HSP 1 Score: 123 bits (308), Expect = 3.390e-28
Identity = 72/226 (31.86%), Postives = 132/226 (58.41%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVPPSVK 783
            V++D  Y+  E P+  +  E ++KG+ YG   +P+   ++ +LK  PE+G  +K+LGF  ASS+PRH YM +T +++AEPG+ ++  AVS++ RAM    ++A++R V R++  N  LG L P+ +  ++    + F  +PF ED+R++ F SF   P+S++P+  Q+  + + V+ + +    G+   +   L LNP+ +        ++   + D+P V  +VK
Sbjct:  265 VKMDIEYKSREEPDKTIPPEQRIKGFNYGPQVVPISMAEQETLKFKPEKG--VKLLGFTDASSIPRHSYMKDTSILIAEPGNTKAILAVSAVARAMEETKKVAILRCVWRERQANVILGVLTPNISNKSNAADSFYFNIIPFVEDIREFPFASFDSFPASQQPNIVQQEAADNFVQMLDLAP-PGREEALLPELTLNPILERFYSFLDTKSRRSDADVPPVDDAVK 487          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: F0X1I1_9STRA (Uncharacterized protein AlNc14C624G12272 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1I1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.270e-28
Identity = 80/220 (36.36%), Postives = 122/220 (55.45%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNNNPWLGALIPD-PTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPECDMPCVP 771
            VR DR Y DP+ P+ EV  + ++K Y YG + +P    D  + K   E  SLK+LGFV A SV    +M  T V +++P    +A   ++LV AMR  +Q+A+ RFV +KN  P + ALIP  P     +  +  Q+LPF ED+RD+ F S  +  S   PS+EQ++I+ SLV+ + + + +     +      NPV +    + VARAI P+  +  +P
Sbjct:  293 VRQDRRYMDPDSPDEEVPPDQRIKAYTYGHESVPFSSADLEAFKFHTEK-SLKLLGFVDAKSVHPANFMVNTNVFLSDPTKKNAATCFATLVNAMRMKNQVAIARFVPRKNAAPKVIALIPHIPAKEIPYHAFWSQQLPFEEDLRDFEFPSILQDNSKSIPSKEQQQIANSLVDGLSVDDDE-----INPRTCYNPVLRRFYDSVVARAIDPDAGISPLP 506          
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Match: A0A2K2DHK7_BRADI (Ku domain-containing protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DHK7_BRADI)

HSP 1 Score: 121 bits (303), Expect = 6.980e-28
Identity = 72/199 (36.18%), Postives = 119/199 (59.80%), Query Frame = 1
Query:  115 VRVDRTYRDPEMPEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKL-PEEGPSLKVLGFVPASSVPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFV-RKKNNNPWLGALIPDPTGVTSHP-RWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSEEQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPV 702
            V+VD  Y+    P+  V  + ++KGY YG   +P+   +  ++K  PE+G  +K+LGF   SS+PRH +M +    V EPG+ ++  AVS++ RAM+ ++++A++R V R+   N   G L P+ + V + P  + F  LPFSED+R++ F SFS  PSS +P+EEQ+  + SLV+ + +    G+   +R     NP+
Sbjct:  262 VKVDFEYKSILEPDTVVPPDQRIKGYLYGPQVVPISSAEWEAVKFKPEKG--VKLLGFADRSSIPRHYFMKDVNSFVPEPGNKKATVAVSAIARAMQEMNKVAILRCVWRQGQGNVAFGVLTPNISSVNNVPDSFFFNILPFSEDIREFQFRSFSSLPSSSQPTEEQQEAADSLVKMLDLAP-PGREEILRPDFTPNPM 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48191.11967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE2.600e-11971.76Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A200QB51_9MAGN3.940e-3235.00ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A4Y7J9E8_PAPSO9.250e-3135.11ATP-dependent DNA helicase 2 subunit KU80 n=3 Tax=... [more]
A0A835IGM5_9MAGN2.870e-2936.53ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A662YG02_9STRA9.440e-2934.36Ku domain-containing protein n=2 Tax=Nothophytopht... [more]
A0A3R7I120_9STRA1.940e-2833.46VWFA domain-containing protein n=3 Tax=Phytophthor... [more]
K3X675_GLOUD2.670e-2835.14VWFA domain-containing protein n=1 Tax=Globisporan... [more]
G9I491_PINSY3.390e-2831.86ATP-dependent DNA helicase 2 subunit KU80 n=2 Tax=... [more]
F0X1I1_9STRA6.270e-2836.36Uncharacterized protein AlNc14C624G12272 n=1 Tax=A... [more]
A0A2K2DHK7_BRADI6.980e-2836.18Ku domain-containing protein n=4 Tax=Brachypodium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48191contigH-elongata_contig48191:149..3594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue5.5e-96
Seed eggNOG ortholog2880.D7FY60
Preferred nameYKU80
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2326@1,KOG2326@2759
Ec32 ortholog descriptionku P80 DNA helicase, putative
Ec32 orthologEc-24_003690.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48191.11967.1prot_H-elongata_contig48191.11967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48191 149..3594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.9725661-CDS-H-elongata_contig48191:148..2121622930794.9725661-CDS-H-elongata_contig48191:148..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 149..212 -
1691679573.4815524-CDS-H-elongata_contig48191:148..2121691679573.4815524-CDS-H-elongata_contig48191:148..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 149..212 -
1622930794.9839327-CDS-H-elongata_contig48191:538..6841622930794.9839327-CDS-H-elongata_contig48191:538..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 539..684 -
1691679573.497992-CDS-H-elongata_contig48191:538..6841691679573.497992-CDS-H-elongata_contig48191:538..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 539..684 -
1622930794.9971557-CDS-H-elongata_contig48191:1234..13931622930794.9971557-CDS-H-elongata_contig48191:1234..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 1235..1393 -
1691679573.5170896-CDS-H-elongata_contig48191:1234..13931691679573.5170896-CDS-H-elongata_contig48191:1234..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 1235..1393 -
1622930795.0113645-CDS-H-elongata_contig48191:1935..21451622930795.0113645-CDS-H-elongata_contig48191:1935..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 1936..2145 -
1691679573.5305712-CDS-H-elongata_contig48191:1935..21451691679573.5305712-CDS-H-elongata_contig48191:1935..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 1936..2145 -
1622930795.028985-CDS-H-elongata_contig48191:2796..28551622930795.028985-CDS-H-elongata_contig48191:2796..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 2797..2855 -
1691679573.547104-CDS-H-elongata_contig48191:2796..28551691679573.547104-CDS-H-elongata_contig48191:2796..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 2797..2855 -
1622930795.0436642-CDS-H-elongata_contig48191:3449..35941622930795.0436642-CDS-H-elongata_contig48191:3449..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 3450..3594 -
1691679573.5575483-CDS-H-elongata_contig48191:3449..35941691679573.5575483-CDS-H-elongata_contig48191:3449..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48191 3450..3594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48191.11967.1

>prot_H-elongata_contig48191.11967.1 ID=prot_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
RYFKKVDTTLKESLKKESIASLDGVGATAGGSSGVGGRVRVDRTYRDPEM
PEVEVDFENQVKGYRYGQDYIPVGPLDEGSLKLPEEGPSLKVLGFVPASS
VPRHLYMDETFVVVAEPGSAQSAGAVSSLVRAMRNLDQMAMVRFVRKKNN
NPWLGALIPDPTGVTSHPRWLFQKLPFSEDVRDYTFLSFSKAPSSRKPSE
EQKRISVSLVEAMMIPEVKGKHAGVRDGLVLNPVRQGINGAKVARAIAPE
CDMPCVPPSVK
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mRNA from alignment at H-elongata_contig48191:149..3594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48191.11967.1 ID=mRNA_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-elongata_contig48191:149..3594- (Himanthalia elongata Himel1 dioecious)
AGATATTTCAAGAAAGTCGACACGACCCTGAAGGAGTCCTTAAAGAAGGA GTCCATCGCGTCGCTCGATGGTGTTGGTGCCACAGCTGGGGGCTCCAGTG GCGTCGGGGGCAGAGTCAGGGTGGACAGGACGTATAGAGATCCAGGTATG TCGAAGCTGAAAAGCATTCATCCACAGTATTTTTTATGACTTGCATGTCG GATTGGACTACCTCGAAGGCGTCGCACGAAGCACGCGGTATACTTTTATG TCTAAATATAGAACTATAAACACACTTCATGTGTAGCTACAAAAGTACTA TATTGTTCATTCATTTTCTTTGGGGTGAGGGGGGGGTCTCCAGGAGACCT GGGTAGGAATCATTCGTTGCCAATGCATTTAATATTAGAGCACATGTAGG ATGTATTTTCCCAACGATGTTATATTTGGCGGGTCGTGATTAGGCCCATG ACATCCGACTTGTCGCTTAACAAATGTTAGCAAGAGTAATCACCCGCACG CCGAGTCGTGCTAACGATGGAACGATACCAACCCTCTATCTTTCAGAAGG CTTTTGTTGCGAAACCGGCGACAGATCCGCGCTCCGCGTTGTCGTATATT TTATTGCGAACGGCGTCGCTCGCTACACCTTTCTGTAGGATGTGGCCGAG ATTCATACAACTCGCCCCCAGATACGACCCGCTGACGAGTATCTCGTGTC CCCCCCCCTCCCCCGCCTTTATCTCTTGTCGGCCTCCAGAGATGCCCGAG GTGGAGGTGGATTTCGAAAACCAGGTCAAGGGTTACCGTTACGGCCAGGT ACGGCGGAATATAAAATATATTTTCATCTCCGAGTACAACATACCCTCGT GTTTGTTTGTCGTCGGTTTCTACCGACGGGGCTAACCATCAACATACTAG GTGCCCAATCCTACCTATTGCTAGCAAAACAAAAAAATGTCCACCCCCCC ACCGCCTGTGGTCTGGGAGGGGGGAGGAGTACGGTACCGCAATCTCCTCT GTCGTCTCTCACGGCTCACATTAACGCTACGCAAGCCAAACTCGTCACTC GTATACCTCGTCAACCAATAGTTGAACCTGTTTTTTACCCACGCTATTAC TATCACGGTATTACTATAACTACGGAAGCCGGAAAGGAATAATTCCTTAG AGAATCGAAGTAGAATATTCCGCACGATTAGTCTACCGGTTGCGCTGTAG ACGAGACGACTCGGGTGGACGGGTATACAACATCGCCAAAGTTACAACGG ACGGCAGCCTCCAACGCGGCGACTACAATCGAGTTCGACTGCTGCCGTAA TCATTATATTCGTCTGTTAACGTTTTTTATATCGGTTTTCCCGTTCGTTC GCGCTCGTAGGCGAATTTTGTAATGTTGACACTGAAAACAGAGAATAAAA GTCACGATGCACTAGATATTATTGTTCCCTTGCTGAACGCGCGCCCCAGG ACTACATCCCGGTGGGGCCCTTGGATGAGGGGTCACTGAAGCTTCCGGAA GAGGGCCCGTCCCTCAAGGTTCTCGGCTTTGTTCCGGCCTCCAGCGTGCC GCGGCACCTGTACATGGACGAAACGTTTGTAGTCGTGGCTGAGCCGGGAA GTGCCCAGTCGGCGGGCGCGGTGTCGAGTCTAGTGCGAGCTATGAGGAAT CTGGATCAGGTTCGACTGTGCCCGACAAATGTTTGGTTGCTTGGTTGAGG AGGGGGGGTGGGCAGTTGTCTCAAGGCAAGTACTTGCTAAGTTCCGGCTA TCGGACGGAGTAAGTTTTCGCGCGCAAATAATCCAACGGCCGATGGTTAC GAAGAGATCAACGCGCTAACGTCACCATTGTAATATCGCAATTTTGTCTT CGACGCATCCATGGCTATGAATTACCTTACATTTAGAGGGCAAAAGGCGA AGGCGGCCACAACTCATGTTGGCTTTTTGTTTGTTTGCTCACTTTTCCCT ACAGGGATGCCACTGTTTTCAATCAGATTCGAGAGCCCAATTTTTCTTCC CTGCATACTCGTAGAGCTGTCATATTTCGGCCCCGTTGTTGCTATCCGTC CCTTGGTGGTTATCGTTCCCTTGGTAGATATTGATTCCTTGGTTGCTATC GGTATATCTTGATTGTTATCGATATTTCTTGGTTATTATCGTTTCCTTGA TCGATGCCGGTCCCTTTGCCATGCTATCGGTCGCATTACCTTGCACTGCA GATGGCTATGGTGCGCTTCGTGAGGAAGAAGAACAACAACCCGTGGCTGG GTGCCCTCATTCCGGATCCGACAGGTGTGACGTCGCATCCCCGCTGGCTG TTCCAGAAACTCCCGTTCAGCGAGGACGTTCGTGACTACACCTTCCTTTC CTTTTCCAAGGTTCGCACACGACCGACTTGAGGTGGCTCGAAGCGGACGT TGTGTCTCCGTCTTCGGCGAAAACATTATCCGGATCTAATGAACACCTAA ATCGGGACTGAATAGCTATAAGACTGTTGAACCGTCCCAGAGGGGACGCG AGGACGGAATTCGAGAGCTCGTCGAACGTGGATCGCGTACCGTCGTTTAC CATACCCTACCATACCATACCCCCGTTAGTTATATTTGTGGCCGAAAATA TTTGACACACACGCTATTATAGTATAAACACCCTGGTGGTATATTCGGTA ATCCTCTTGTAGGAAACAATAACTGGAGGGAATTACTCCTATAGAGGCTT AAAACCTGAAACACCCGGGGATTTTGGCCCCCGGAATGTGATATGTCAAA AGGGGTAATATATAACCCATCCCCTAAAGTAGGTGCCCGAGAGGTGCATA CTTTTCGTCGCGCTGATTTCTCTCTCGCGCTGATCGTTTTGACCGCTCTC TAAGTTCCATTCCCCTCCCTACCCCCAAAACCCCCCAACGTTTAACGTTT TGTTAAGCAGGCTCCGAGTAGCCGTAAGCCTTCCGAAGAACAAAAGAGGA TCTCTGTATCGCTCGTGGAGGCGATGATGATCCCAGAGGTCAAGGGAAAA CATGCGGGCGTTCGAGATGGGCTTGTGCTCAACCCCGTCCGCCAGGGCAT CAATGGGTTCGTACTCGTAGGCTCTCTACTGCGGTGTACGTACAGCTGTG TTATCCAAGATCTCTCCTCCGACGACAATGGGGTTTTCTAAAGTAAAGTA GGCATGGTCTTCTAACCTACACTTCTGAACGCACACCACACAGGCGTCCT GGATGAAAGCATCCGTTCTTGAAGCATATTTCTACAATACAAGAACTGGT TGCAAAAGAAGCAACCACCACTGGCGGTACACAATACCGTTGGCAGTAAC TTAACACACACACTCACAAAATGCGCTCTTGCTCATGTCTAGACTTTGTA AAACGGTCTCTTTTACGGCCCTTGTGTGACAGGGCGAAGGTGGCGCGTGC CATTGCGCCGGAATGCGACATGCCATGCGTGCCCCCGTCGGTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig48191:149..3594-

>mRNA_H-elongata_contig48191.11967.1 ID=mRNA_H-elongata_contig48191.11967.1|Name=mRNA_H-elongata_contig48191.11967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig48191:149..3594- (Himanthalia elongata Himel1 dioecious)
AGATATTTCAAGAAAGTCGACACGACCCTGAAGGAGTCCTTAAAGAAGGA
GTCCATCGCGTCGCTCGATGGTGTTGGTGCCACAGCTGGGGGCTCCAGTG
GCGTCGGGGGCAGAGTCAGGGTGGACAGGACGTATAGAGATCCAGAGATA
TTTCAAGAAAGTCGACACGACCCTGAAGGAGTCCTTAAAGAAGGAGTCCA
TCGCGTCGCTCGATGGTGTTGGTGCCACAGCTGGGGGCTCCAGTGGCGTC
GGGGGCAGAGTCAGGGTGGACAGGACGTATAGAGATCCAGAGATGCCCGA
GGTGGAGGTGGATTTCGAAAACCAGGTCAAGGGTTACCGTTACGGCCAGA
GATGCCCGAGGTGGAGGTGGATTTCGAAAACCAGGTCAAGGGTTACCGTT
ACGGCCAGGACTACATCCCGGTGGGGCCCTTGGATGAGGGGTCACTGAAG
CTTCCGGAAGAGGGCCCGTCCCTCAAGGTTCTCGGCTTTGTTCCGGCCTC
CAGCGTGCCGCGGCACCTGTACATGGACGAAACGTTTGTAGTCGTGGCTG
AGCCGGGAAGTGCCCAGTCGGCGGGCGCGGTGTCGAGTCTAGTGCGAGCT
ATGAGGAATCTGGATCAGGACTACATCCCGGTGGGGCCCTTGGATGAGGG
GTCACTGAAGCTTCCGGAAGAGGGCCCGTCCCTCAAGGTTCTCGGCTTTG
TTCCGGCCTCCAGCGTGCCGCGGCACCTGTACATGGACGAAACGTTTGTA
GTCGTGGCTGAGCCGGGAAGTGCCCAGTCGGCGGGCGCGGTGTCGAGTCT
AGTGCGAGCTATGAGGAATCTGGATCAGATGGCTATGGTGCGCTTCGTGA
GGAAGAAGAACAACAACCCGTGGCTGGGTGCCCTCATTCCGGATCCGACA
GGTGTGACGTCGCATCCCCGCTGGCTGTTCCAGAAACTCCCGTTCAGCGA
GGACGTTCGTGACTACACCTTCCTTTCCTTTTCCAAGATGGCTATGGTGC
GCTTCGTGAGGAAGAAGAACAACAACCCGTGGCTGGGTGCCCTCATTCCG
GATCCGACAGGTGTGACGTCGCATCCCCGCTGGCTGTTCCAGAAACTCCC
GTTCAGCGAGGACGTTCGTGACTACACCTTCCTTTCCTTTTCCAAGGCTC
CGAGTAGCCGTAAGCCTTCCGAAGAACAAAAGAGGATCTCTGTATCGCTC
GTGGAGGCGATGATGATCCCAGAGGTCAAGGGAAAACATGCGGGCGTTCG
AGATGGGCTTGTGCTCAACCCCGTCCGCCAGGGCATCAATGGGCTCCGAG
TAGCCGTAAGCCTTCCGAAGAACAAAAGAGGATCTCTGTATCGCTCGTGG
AGGCGATGATGATCCCAGAGGTCAAGGGAAAACATGCGGGCGTTCGAGAT
GGGCTTGTGCTCAACCCCGTCCGCCAGGGCATCAATGGGGCGAAGGTGGC
GCGTGCCATTGCGCCGGAATGCGACATGCCATGCGTGCCCCCGTCGGTCA
AGGGCGAAGGTGGCGCGTGCCATTGCGCCGGAATGCGACATGCCATGCGT
GCCCCCGTCGGTCAAG
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