mRNA_H-elongata_contig48093.11949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48093.11949.1
Unique NamemRNA_H-elongata_contig48093.11949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 7.960e-73
Identity = 114/208 (54.81%), Postives = 149/208 (71.63%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMK 626
            HTV+VYGA+T   DR +LVMEL++GGDLRTLL   + P P +++R I+ DVCSGMAFLHSK  +HGDLKSANVL DG G AKI DFGT +W QH  STGLAT    T+ + ST MS+ W+APEVL+ + ++++SDVYSFGI+AWE+ S++MPW            VL G RP IP  A  ++ DV+++CWA +P ARP F  I++ +K
Sbjct:  177 HTVNVYGAVTCLPDRLILVMELLSGGDLRTLLSSCDQPFPEEQSRRIIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKIGDFGTSRWAQHTNSTGLAT--YTTRSSRSTPMSLAWSAPEVLEAEGSTYESDVYSFGIVAWEVISKKMPWADKIRPRDVICAVLKGLRPVIPAGATVDIADVMKACWAEEPEARPKFGAIMEGLK 382          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 4.910e-70
Identity = 119/210 (56.67%), Postives = 152/210 (72.38%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGL-NARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMKS 629
            HTV VYGAITSR DR VLVMEL+ GGDLR LL+ ++ PLP ++ R I+ D+C+GM FLHSK  +HGDLKSANVL DG G AKI DFGT +W  H  STGLAT    TK   +T MS+ W+APEVL    +++ SDVYSFGI+AWE+ SR +PW  + + R ++ RVVL   RPEIP DA  ++  ++R+CWAGDP ARP  S I++ ++S
Sbjct:  999 HTVGVYGAITSRPDRLVLVMELLAGGDLRRLLKNSDQPLPEEQCRRIIGDICAGMHFLHSKETVHGDLKSANVLLDGAGRAKIGDFGTSRWSYHTNSTGLATY---TKAGQNTQMSLAWSAPEVLGASGSTYASDVYSFGIVAWEVLSRELPWASVVHPREVYIRVVLNELRPEIPADAPADIATIMRACWAGDPEARPTSSAIMERIES 1205          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.730e-67
Identity = 113/209 (54.07%), Postives = 147/209 (70.33%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMKS 629
            HTV+VYGA+TS+ D  VLVMEL++GGDLRTLLR +E PLP++++R I+ D+C+GMAFLH K  +HGDLKSANVL DG G AKI DFGT +W QH  STGLAT Y  TK   ST MS+ W+APEVL+   +++ SDVYSFGI+ WE+ S  +PW            VL GARP   +DA  ++ ++ ++CW G+P AR  F  +L+ M S
Sbjct:  879 HTVNVYGAVTSQPDHMVLVMELLSGGDLRTLLRTSEQPLPQEQSRRIIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTHSTGLAT-YTTTK--PSTQMSLAWSAPEVLESGGSTYASDVYSFGIVVWEVVSGELPWANKTRPREILSAVLMGARPSFRHDAPADIVEIAKACWVGEPRARTTFDAVLEGMDS 1084          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.020e-65
Identity = 113/212 (53.30%), Postives = 144/212 (67.92%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMM--KSW 632
            +TV+VYGA+TS +DR VLVMEL+  GDL TLLR++  PLP +++R I+ D+C+GMAFLH K  +HGDLKSANVL DG G AKI DFGT +W QH  STGLAT    TK   ST MS+ W+APEVL+   +++KSDVYSFGI+ WE+ SR +PW            VL G RP    DA  ++ D+ ++CW G+P  R  FS IL+ M  K W
Sbjct:  865 NTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLAT--YTTKANQSTQMSLAWSAPEVLESGGSTYKSDVYSFGIVVWEVLSRELPWANKTRPRDILSAVLMGIRPSFHVDAPADIVDIAKACWGGEPEERTTFSAILEGMDAKGW 1074          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.200e-65
Identity = 113/212 (53.30%), Postives = 144/212 (67.92%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMM--KSW 632
            +TV+VYGA+TS +DR VLVMEL+  GDL TLLR++  PLP +++R I+ D+C+GMAFLH K  +HGDLKSANVL DG G AKI DFGT +W QH  STGLAT    TK   ST MS+ W+APEVL+   +++KSDVYSFGI+ WE+ SR +PW            VL G RP    DA  ++ D+ ++CW G+P  R  FS IL+ M  K W
Sbjct:  890 NTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLAT--YTTKANQSTQMSLAWSAPEVLESGGSTYKSDVYSFGIVVWEVFSRELPWANKTRPRDILSAVLMGIRPSFHVDAPADIVDIAKACWGGEPEERTTFSAILEGMDAKGW 1099          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 7.870e-65
Identity = 115/202 (56.93%), Postives = 144/202 (71.29%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGV-STGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVG-LNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNF 602
            HTV+VYGAITS+ +R VLVMEL+ GGDLR +L+ +E PLP D+ R I++DVC+GMAFLHSK  +HGDLKSANVL DG G AKI DFGT +W Q+   STGLAT    T    STH+S+ W APEVL+    S  SDVYSFG++AWE+ +R+ PW      R IF RVV+   RP IP DA  ++ +++RSCWA +P  RP F
Sbjct:  725 HTVNVYGAITSQPNRLVLVMELLAGGDLRAMLKNSEQPLPEDKCRQIIHDVCAGMAFLHSKATVHGDLKSANVLLDGRGRAKIGDFGTSRWAQNTERSTGLAT--YTTNPGPSTHISLAWTAPEVLEAKETSKASDVYSFGMVAWEVLTRQTPWADQTRPRDIFLRVVMREERPAIPADAPVDIAEMVRSCWAQEPLDRPTF 924          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 8.450e-65
Identity = 109/209 (52.15%), Postives = 143/209 (68.42%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMKS 629
            HTV+VYGA+TS  DR VLVMEL++GGDLRTLLR  + PLP +++R I+ D+C+GMAFLHSK  +HGDLKSANVL DG G AKI DFGT +W QH  STGLAT    T+ +  T MS+ W+APEVL+   ++  SDVYSFGI+ WE+ S  +PW   +        VL G RP   + A  +M ++ ++CW G+P AR  F  +++ M S
Sbjct:  740 HTVNVYGAVTSLPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTNSTGLAT--YTTRSSPGTQMSLAWSAPEVLESGGSTRASDVYSFGIVVWEVVSGELPWANKSRPREILSAVLMGVRPSFNDIAPTDMVEIAKACWEGEPDARTTFDAVMEGMMS 946          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 5.290e-64
Identity = 112/209 (53.59%), Postives = 145/209 (69.38%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMKS 629
            +TV+V+GA+TS  DR VLVMEL+ GGDL TLLR+++  LP +++R I+ D+C+GMAFLHSK  +HGDLKSANVL D  G AKIADFGT +W Q   STGL TTY  TK + +T MSI W+APEVLD + +S++SDVYSFGI+ WE+ SR +PW            VL G RP     A  ++ D+ ++CW G+P  R  F  ILD MK+
Sbjct:  687 NTVNVFGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPEEQSRLIIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKIADFGTSRWTQTINSTGL-TTYT-TKSSQTTQMSIAWSAPEVLDSEKSSYESDVYSFGIVVWEVLSRELPWANKTRPSEVLTAVLRGIRPSFHVGAPADIVDIAKACWCGEPKERTTFRAILDGMKA 893          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 6.880e-64
Identity = 114/207 (55.07%), Postives = 142/207 (68.60%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGV-STGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVG-LNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILD 617
            HTV+VYGAITS  DR VLVMEL+ GGDLR +L+ +E PLP D+ R I+ DVC+GMAFLHSK  +HGDLKSANVL DG G AKI DFGT +W Q+   STGLAT    T    S H+S  W APEVL+    S  SDVYSFG++AWE+ +R+ PW      R I+ RVV+   RP IP DA  ++ +++RSCWA +P  RP F  + +
Sbjct:  887 HTVNVYGAITSLPDRLVLVMELLAGGDLRAMLKNSEQPLPEDKCRQIIQDVCAGMAFLHSKATVHGDLKSANVLLDGRGRAKIGDFGTSRWAQNTERSTGLAT--YTTNPGPSAHISFAWTAPEVLESKETSTASDVYSFGMVAWEVLTRQTPWADQARPRDIYLRVVMREERPAIPADAPVDIAEMVRSCWAQEPEDRPTFPGLCN 1091          
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.140e-63
Identity = 111/205 (54.15%), Postives = 143/205 (69.76%), Query Frame = 3
Query:    3 HTVHVYGAITSRTDRFVLVMELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLKSANVLFDGCGTAKIADFGTEKWVQHGV-STGLATTYVGTKVTSSTHMSIPWAAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVG-LNARMIFRRVVLAGARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDI 611
            HTV+VYGAITS  DR +LV+EL+ GGDLRT+L+ +E PLP +++R I+ D+C+GMAFLHSK  +HGDLKSAN+L D  G AKI DFGT +W Q+   STGLAT    T    STH+S  W APEVL+    S  SDVYSFGI+ WE+ SR++PW      R I+ RVV+ G RP +P DA  ++ D++  CWA +PT RP F  +
Sbjct:  949 HTVNVYGAITSLPDRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKIGDFGTSRWTQNTERSTGLAT--YTTNPGPSTHISFAWTAPEVLEKQTTSKASDVYSFGIVVWEVLSRQLPWADQAQPRDIYLRVVIHGDRPALPADAPVDIADMLLGCWAQEPTERPTFQAL 1151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48093.11949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU2_ECTSI7.960e-7354.81Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KY76_9PHAE4.910e-7056.67Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI1.730e-6754.07Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X7_ECTSI1.020e-6553.30ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE1.200e-6553.30Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FRQ5_ECTSI7.870e-6556.93Similar to CG1848-PA, isoform A/ leucine rich repe... [more]
D8LRE9_ECTSI8.450e-6552.15Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
A0A6H5JSI8_9PHAE5.290e-6453.59Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LH32_ECTSI6.880e-6455.07Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]
D7FN19_ECTSI1.140e-6354.15Putative CTR1-like protein kinase/ leucine rich re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48093contigH-elongata_contig48093:1920..3366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue4.7e-52
Seed eggNOG ortholog2880.D8LAU2
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size651
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48093.11949.1prot_H-elongata_contig48093.11949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48093 1930..3307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.281779-UTR-H-elongata_contig48093:1919..19291622930793.281779-UTR-H-elongata_contig48093:1919..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48093 1920..1929 -
1691679572.813414-UTR-H-elongata_contig48093:1919..19291691679572.813414-UTR-H-elongata_contig48093:1919..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48093 1920..1929 -
1622930793.3435047-UTR-H-elongata_contig48093:3307..33661622930793.3435047-UTR-H-elongata_contig48093:3307..3366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48093 3308..3366 -
1691679572.8659806-UTR-H-elongata_contig48093:3307..33661691679572.8659806-UTR-H-elongata_contig48093:3307..3366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48093 3308..3366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.2951906-CDS-H-elongata_contig48093:1929..21991622930793.2951906-CDS-H-elongata_contig48093:1929..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 1930..2199 -
1691679572.834448-CDS-H-elongata_contig48093:1929..21991691679572.834448-CDS-H-elongata_contig48093:1929..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 1930..2199 -
1622930793.3097188-CDS-H-elongata_contig48093:2564..26871622930793.3097188-CDS-H-elongata_contig48093:2564..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 2565..2687 -
1691679572.844269-CDS-H-elongata_contig48093:2564..26871691679572.844269-CDS-H-elongata_contig48093:2564..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 2565..2687 -
1622930793.3276029-CDS-H-elongata_contig48093:3118..33071622930793.3276029-CDS-H-elongata_contig48093:3118..3307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 3119..3307 -
1691679572.8539681-CDS-H-elongata_contig48093:3118..33071691679572.8539681-CDS-H-elongata_contig48093:3118..3307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48093 3119..3307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48093.11949.1

>prot_H-elongata_contig48093.11949.1 ID=prot_H-elongata_contig48093.11949.1|Name=mRNA_H-elongata_contig48093.11949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MELMTGGDLRTLLRQAEAPLPRDRARGIMNDVCSGMAFLHSKGAIHGDLK
SANVLFDGCGTAKIADFGTEKWVQHGVSTGLATTYVGTKVTSSTHMSIPW
AAPEVLDDDPASFKSDVYSFGIIAWEIASRRMPWVGLNARMIFRRVVLAG
ARPEIPNDAAEEMEDVIRSCWAGDPTARPNFSDILDMMKSWIN*
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mRNA from alignment at H-elongata_contig48093:1920..3366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48093.11949.1 ID=mRNA_H-elongata_contig48093.11949.1|Name=mRNA_H-elongata_contig48093.11949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1447bp|location=Sequence derived from alignment at H-elongata_contig48093:1920..3366- (Himanthalia elongata Himel1 dioecious)
CTCACACTGTCCATGTGTATGGAGCAATCACGTCTCGCACCGACCGCTTT GTGCTCGTCATGGAACTCATGACGGGTGGTGATCTACGGACGTTGCTGAG ACAAGCTGAAGCTCCACTCCCACGAGACCGTGCACGAGGCATCATGAACG ATGTTTGCTCCGGGATGGCCTTCTTGCATAGCAAGGGTGCAATTCATGGT GACCTCAAATCGGCAAACGTTCTTTTCGACGGATGTGGCACGGCTAAGGT AAAATTGATATATAATGTGTCTGTGACGCTTTTGCGGTGGATCTTCATTG TTTTAATGCCACAAAAGCTCGCATTCCCATCTATACATAAGTTTTGTTTG CTTGCTTGTACCAAGTGCCGTAAGATAAGTTTCGTGTCGTGATCATACCA GATAGCATGTGCTCCACGTATGTTCTTCGTCATGGGGTATACGTGCAGAT ATTTACTTTAGAGTAACCGTGATTTAAGAGGGGATTGAAGAGTCAGTATT ACGGCCAAACAATCGTCTAATATGCACAGTATGCTGGGGGGAAGTGGATT GGGATTGAGTAATCTTCCGAAGGTATCACCGATTCTCTTGGGCATTGCCG TAGTCACGCGTCACGCGAGCATCATAAAATATGTGCACATTTCTCCCCGT ATGTGGGTGACGCTACTGTTATCTCGCAGATTGCTGATTTTGGCACAGAA AAATGGGTTCAGCATGGAGTGTCGACAGGGTTGGCCACTACATATGTTGG CACGAAGGTCACTAGTAGCACCCATATGAGCATTCCATGGGCTGCTCCTG AGGTATGAGCAAGCCTGCCCATATCACTATAGAAAAAAAGAAATTATGTC GCCGGTATGAAGGAAGATGTTGTCAACATCCACAAAGTCTGCCGTGAAAC CATTCGATGTCGTGTACACTGAGCTTACATTGGTTTTAATAAGCTGAATA CTGCAAGCTCTACTTGCTGTCGAGTGCGCTTCTCTTCTGATGTAGGAGAT ATTTTCCCCAGCATTAATATGTTGCTATTTTATACGGTGAACTCTAGGGG TGACTCAACCCGTAGCTTGGAACGCTTGCCTTCACGGCAAAGCAAGGTGA AAATGCACACTTGCCAGCCTTCACTAACAGTTAAAAGGTGTTCACTGCGC ACGCACCTACCTTCCAGGTACTTGATGACGACCCGGCGTCCTTCAAAAGT GACGTTTACAGCTTCGGCATCATCGCATGGGAAATCGCTTCAAGGCGGAT GCCTTGGGTTGGCCTAAACGCTCGCATGATCTTCAGGCGTGTGGTACTCG CTGGAGCCCGCCCTGAAATACCAAACGATGCCGCAGAGGAAATGGAAGAC GTCATTCGTTCATGTTGGGCAGGAGATCCTACCGCAAGGCCAAACTTTAG CGACATTCTGGACATGATGAAGTCGTGGATTAATTGAAGTCAGTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig48093:1920..3366-

>mRNA_H-elongata_contig48093.11949.1 ID=mRNA_H-elongata_contig48093.11949.1|Name=mRNA_H-elongata_contig48093.11949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig48093:1920..3366- (Himanthalia elongata Himel1 dioecious)
ATGGAACTCATGACGGGTGGTGATCTACGGACGTTGCTGAGACAAGCTGA
AGCTCCACTCCCACGAGACCGTGCACGAGGCATCATGAACGATGTTTGCT
CCGGGATGGCCTTCTTGCATAGCAAGGGTGCAATTCATGGTGACCTCAAA
TCGGCAAACGTTCTTTTCGACGGATGTGGCACGGCTAAGATGGAACTCAT
GACGGGTGGTGATCTACGGACGTTGCTGAGACAAGCTGAAGCTCCACTCC
CACGAGACCGTGCACGAGGCATCATGAACGATGTTTGCTCCGGGATGGCC
TTCTTGCATAGCAAGGGTGCAATTCATGGTGACCTCAAATCGGCAAACGT
TCTTTTCGACGGATGTGGCACGGCTAAGATTGCTGATTTTGGCACAGAAA
AATGGGTTCAGCATGGAGTGTCGACAGGGTTGGCCACTACATATGTTGGC
ACGAAGGTCACTAGTAGCACCCATATGAGCATTCCATGGGCTGCTCCTGA
GATTGCTGATTTTGGCACAGAAAAATGGGTTCAGCATGGAGTGTCGACAG
GGTTGGCCACTACATATGTTGGCACGAAGGTCACTAGTAGCACCCATATG
AGCATTCCATGGGCTGCTCCTGAGGTACTTGATGACGACCCGGCGTCCTT
CAAAAGTGACGTTTACAGCTTCGGCATCATCGCATGGGAAATCGCTTCAA
GGCGGATGCCTTGGGTTGGCCTAAACGCTCGCATGATCTTCAGGCGTGTG
GTACTCGCTGGAGCCCGCCCTGAAATACCAAACGATGCCGCAGAGGAAAT
GGAAGACGTCATTCGTTCATGTTGGGCAGGAGATCCTACCGCAAGGCCAA
ACTTTAGCGACATTCTGGACATGATGAAGTCGTGGATTAATTGAGTACTT
GATGACGACCCGGCGTCCTTCAAAAGTGACGTTTACAGCTTCGGCATCAT
CGCATGGGAAATCGCTTCAAGGCGGATGCCTTGGGTTGGCCTAAACGCTC
GCATGATCTTCAGGCGTGTGGTACTCGCTGGAGCCCGCCCTGAAATACCA
AACGATGCCGCAGAGGAAATGGAAGACGTCATTCGTTCATGTTGGGCAGG
AGATCCTACCGCAAGGCCAAACTTTAGCGACATTCTGGACATGATGAAGT
CGTGGATTAATTGA
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