mRNA_H-elongata_contig4786.11924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4786.11924.1
Unique NamemRNA_H-elongata_contig4786.11924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 5.650e-87
Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 1 
Query:  325 RFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
            RFTP RYRMIVRYKTAYYTFYLPCAIGMIYAGVKD ASYRLARDICCRIGEFFQIQDD+LDCFGDP+VIGKVGTDIQDNKCSWLVVQAL+RA K QKA+L++NYAIDEE KIERVK LYREL LE VY+KYEE+THKQIK+LIAKVE IPHAVFHQFIDKIYKRSK
Sbjct:  334 RFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEKVYAKYEEDTHKQIKELIAKVEDIPHAVFHQFIDKIYKRSK 499
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 9.960e-76
Identity = 133/152 (87.50%), Postives = 143/152 (94.08%), Query Frame = 1 
Query:  328 FTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAV 783
            FTP RYRMIVRYKTAYYTFYLPCAIGMIYAGVKD ASYRLARDICCRIGEFFQIQDD+LDCFGDP+VIGKVGTDIQDNKCSWLVVQAL+RA + QKA+L++NYAIDEE KIERVK LYREL LE VY+KYEE+THKQIK+LIAKVE IPHAV
Sbjct:  353 FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASRAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 504
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A835YUF9_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF9_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.500e-58
Identity = 107/166 (64.46%), Postives = 131/166 (78.92%), Query Frame = 1 
Query:  325 RFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
            RFT TRY MIV+YKTA+YTFYLPCAIGMIYAGV D +S+ LAR ICC IGE+FQIQDD+LDC+GDP  IGKVGTDIQD KCSWLVVQAL+R    QK  L+ NY  D+ EKI +VKA+Y +L L  VY  YEE+++K+I+ LI +V+ +P  V+H F+ +IYKR K
Sbjct:  287 RFTKTRYAMIVKYKTAFYTFYLPCAIGMIYAGVSDPSSFALARRICCTIGEYFQIQDDYLDCYGDPKFIGKVGTDIQDMKCSWLVVQALERCSAAQKDELIANYGKDDAEKIGKVKAIYNDLKLADVYHAYEEQSYKEIQGLIEEVKDVPKDVYHNFVKRIYKRDK 452
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A812TYN2_SYMMI (Fps protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TYN2_SYMMI)

HSP 1 Score: 206 bits (523), Expect = 1.280e-55
Identity = 103/167 (61.68%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:  322 DRFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
             RFT  RYR IV+YKTA+Y+FYLP A+GM+ AGV + A Y  AR+I C +GE+FQIQDD LDCFG P+VIGKVGTDIQDNKCSWLVVQAL RADK+Q+ LL  NY   +++K+E+VK LYR+L+LE ++ KYEEE+H QIK +I     +P  VF   + KIYKR+K
Sbjct:  153 SRFTIQRYRSIVKYKTAFYSFYLPVALGMVKAGVTERALYDKAREILCIMGEYFQIQDDVLDCFGAPEVIGKVGTDIQDNKCSWLVVQALDRADKKQRELLERNYGQHDDKKVEKVKTLYRDLNLEQLFQKYEEESHAQIKAMIDSTPDLPREVFEFLLKKIYKRTK 319
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A835Z5G4_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.920e-55
Identity = 103/166 (62.05%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:  325 RFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
            RFT TRY MIV+YKTA+YTFYLPCAIGMIYA V D +S+ LAR ICC IGE+FQIQDD+LDC+GDP VIGKVGTDIQD KCSWLVVQAL++   +Q+  L++NY  ++ +KI +VKALY  L L + Y  YEE++H +I+ LIA+V+ +P  V++ F+ +IYKR K
Sbjct:  340 RFTATRYAMIVKYKTAFYTFYLPCAIGMIYASVSDPSSFALARRICCIIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDMKCSWLVVQALEKCTPEQRQQLMDNYGKNDPKKIAKVKALYTALGLPAAYRNYEEQSHGEIQTLIAEVKDVPTDVYNNFVKRIYKRDK 505
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A7S2JT51_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT51_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.180e-54
Identity = 103/167 (61.68%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:  322 DRFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
             RFT  RY++IV+YKTA+YTFYL  AIGMI +GV D  +Y LA++ICC IGE+FQIQDD+LDC+GDP VIGKVGTDIQDNKCSWLVVQAL+R D +QK LL ENY   +++K+++VK LY EL LE V+ +YEE ++++I+  + KVE +P  VF   + KIYKRSK
Sbjct:  199 SRFTLERYKLIVKYKTAFYTFYLSVAIGMITSGVTDPEAYSLAKEICCIIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDNKCSWLVVQALERVDAEQKKLLEENYGQWDDDKVKKVKDLYGELGLEQVFKEYEEASYERIQKGLEKVELMPKEVFELLLKKIYKRSK 365
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: B7GA81_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA81_PHATC)

HSP 1 Score: 199 bits (505), Expect = 6.890e-53
Identity = 100/167 (59.88%), Postives = 128/167 (76.65%), Query Frame = 1 
Query:  322 DRFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
            DRFT TRY+ IV+YKTA+Y+FYLP A+GMI +GV DA +   AR ICC +GE+FQIQDD+LDCFGDP VIGKVGTDIQDNKCSWLVVQAL R    Q+ +L  +Y   +++K+E VK+LYREL L  V+  YEE+++ QI+  + +V  +P  VF  F++KIYKRSK
Sbjct:  177 DRFTLTRYQQIVKYKTAFYSFYLPVAMGMILSGVTDAPALAQARTICCLMGEYFQIQDDYLDCFGDPAVIGKVGTDIQDNKCSWLVVQALARCTPAQRDVLQNHYGQSDDQKVETVKSLYRELQLVEVFHAYEEDSYAQIQAQLEQVHAVPKQVFVLFLNKIYKRSK 343
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: E1Z2N1_CHLVA (Uncharacterized protein FPPS n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z2N1_CHLVA)

HSP 1 Score: 197 bits (501), Expect = 2.590e-52
Identity = 96/167 (57.49%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:  322 DRFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
             R+T   Y  IV YKTA+YTFYLP A G+  AG+ D A+Y+LA DIC ++G +FQIQDD+LDCFGDP+VIGK+GTDIQDNKCSWLVVQAL RA ++QKA + E+Y  DEE  ++RVK +YR+LDLE ++ KYE+++H Q+   I   + +P  VF   + KIYKR K
Sbjct:  180 SRYTLDTYLRIVTYKTAFYTFYLPVACGLRLAGITDPAAYKLAEDICLQMGRYFQIQDDYLDCFGDPEVIGKIGTDIQDNKCSWLVVQALTRASEEQKAAIEESYGKDEEAAVQRVKEVYRQLDLEGLFKKYEQDSHDQLVKTIEGQDLLPQGVFTMLLKKIYKRQK 346
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A0G2T690_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A0G2T690_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.730e-51
Identity = 94/167 (56.29%), Postives = 131/167 (78.44%), Query Frame = 1 
Query:  322 DRFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
             RFT  RYR IV+YKTA+Y+FYLP A  M+ +GV ++ S++ AR+ICC +GE+FQIQDD LDC+G P+VIGKVGTDIQDNKCSWL+VQAL RA  +Q+ ++ ENY   ++ K+ ++KA+Y E+ L+SV+ KYEE+++ +I++ + K+  IP  VF  F+DKIYKRSK
Sbjct:  266 SRFTIERYRKIVKYKTAFYSFYLPVASAMLMSGVTNSKSFKTARNICCIMGEYFQIQDDVLDCYGTPEVIGKVGTDIQDNKCSWLIVQALDRATPEQRKVIEENYGKWDDAKVAKIKAIYNEMGLKSVFEKYEEDSYAEIQEELKKINDIPQEVFTLFLDKIYKRSK 432
[Close]
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Match: A0A7S3V6T5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6T5_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.350e-51
Identity = 100/166 (60.24%), Postives = 128/166 (77.11%), Query Frame = 1 
Query:  325 RFTPTRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDDFLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDEEEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFIDKIYKRSK 822
            RFT  RY+ IV+YKTA+YTFYLP AIGMI + V++  +Y LA+ ICC++GE+FQIQDD+LDCFGDP+VIGKVGTDIQDNKCSWLVVQAL R   +Q+A+L  NY   +++K+  VKALY+ELDL  V+  YEE++ K I+  + KV  +P  VF   + KIYKRSK
Sbjct:  267 RFTLERYQKIVKYKTAFYTFYLPVAIGMITSRVEEGPTYDLAKKICCQMGEYFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALDRVTPEQRAVLEANYGQWDDQKVANVKALYKELDLVKVFQTYEEDSFKIIQTELDKVTTMPRDVFELLLKKIYKRSK 432
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4786.11924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP5_ECTSI5.650e-8789.16Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE9.960e-7687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUF9_9STRA1.500e-5864.46Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
A0A812TYN2_SYMMI1.280e-5561.68Fps protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A835Z5G4_9STRA1.920e-5562.05Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
A0A7S2JT51_9STRA1.180e-5461.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B7GA81_PHATC6.890e-5359.88Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
E1Z2N1_CHLVA2.590e-5257.49Uncharacterized protein FPPS n=1 Tax=Chlorella var... [more]
A0A0G2T690_9STRA1.730e-5156.29Farnesyl pyrophosphate synthase n=1 Tax=Rhizosolen... [more]
A0A7S3V6T5_9STRA2.350e-5160.24Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4786contigH-elongata_contig4786:2..4264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue1.5e-75
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
EC2.5.1.1,2.5.1.10,4.4.1.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons6
Model size3128
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4786.11924.1prot_H-elongata_contig4786.11924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4786 350..1900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.967596-UTR-H-elongata_contig4786:1..3491622930789.967596-UTR-H-elongata_contig4786:1..349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 2..349 +
1691679571.273732-UTR-H-elongata_contig4786:1..3491691679571.273732-UTR-H-elongata_contig4786:1..349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 2..349 +
1622930790.0558884-UTR-H-elongata_contig4786:1900..28851622930790.0558884-UTR-H-elongata_contig4786:1900..2885Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 1901..2885 +
1691679571.3207653-UTR-H-elongata_contig4786:1900..28851691679571.3207653-UTR-H-elongata_contig4786:1900..2885Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 1901..2885 +
1622930790.0692594-UTR-H-elongata_contig4786:2914..41291622930790.0692594-UTR-H-elongata_contig4786:2914..4129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 2915..4129 +
1691679571.3290265-UTR-H-elongata_contig4786:2914..41291691679571.3290265-UTR-H-elongata_contig4786:2914..4129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 2915..4129 +
1622930790.0828493-UTR-H-elongata_contig4786:4161..42641622930790.0828493-UTR-H-elongata_contig4786:4161..4264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 4162..4264 +
1691679571.3386278-UTR-H-elongata_contig4786:4161..42641691679571.3386278-UTR-H-elongata_contig4786:4161..4264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4786 4162..4264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.983299-CDS-H-elongata_contig4786:349..5381622930789.983299-CDS-H-elongata_contig4786:349..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 350..538 +
1691679571.284481-CDS-H-elongata_contig4786:349..5381691679571.284481-CDS-H-elongata_contig4786:349..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 350..538 +
1622930790.0039651-CDS-H-elongata_contig4786:921..10411622930790.0039651-CDS-H-elongata_contig4786:921..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 922..1041 +
1691679571.2919776-CDS-H-elongata_contig4786:921..10411691679571.2919776-CDS-H-elongata_contig4786:921..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 922..1041 +
1622930790.0230057-CDS-H-elongata_contig4786:1368..14911622930790.0230057-CDS-H-elongata_contig4786:1368..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 1369..1491 +
1691679571.2996511-CDS-H-elongata_contig4786:1368..14911691679571.2996511-CDS-H-elongata_contig4786:1368..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 1369..1491 +
1622930790.0419848-CDS-H-elongata_contig4786:1855..19001622930790.0419848-CDS-H-elongata_contig4786:1855..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 1856..1900 +
1691679571.3074498-CDS-H-elongata_contig4786:1855..19001691679571.3074498-CDS-H-elongata_contig4786:1855..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4786 1856..1900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4786.11924.1

>prot_H-elongata_contig4786.11924.1 ID=prot_H-elongata_contig4786.11924.1|Name=mRNA_H-elongata_contig4786.11924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MIVRYKTAYYTFYLPCAIGMIYAGVKDAASYRLARDICCRIGEFFQIQDD
FLDCFGDPDVIGKVGTDIQDNKCSWLVVQALQRADKQQKALLLENYAIDE
EEKIERVKALYRELDLESVYSKYEEETHKQIKDLIAKVEHIPHAVFHQFI
DKIYKRSK*
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mRNA from alignment at H-elongata_contig4786:2..4264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4786.11924.1 ID=mRNA_H-elongata_contig4786.11924.1|Name=mRNA_H-elongata_contig4786.11924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4263bp|location=Sequence derived from alignment at H-elongata_contig4786:2..4264+ (Himanthalia elongata Himel1 dioecious)
GTGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCAT
CCTAGTCCTTCTATGCCACTCGTATTGATCGATCCTCCTAGGAGGGGGAT
CAATGATACTTATTCCGAAAACCTGTGTGTGTGTGTGTGTTGTCCTGTGC
TGTCCTTGTACGCTTCGTTTTCTGGCTCGTTTTAGGGTCCTTTGAAATAA
AAAATAAGCCCAGTGGCAGGTTTTGCAATGCGTGACTGGCGTCTATATTC
TCTTTGGAATTTTTATTGGCTGTTGGCGTTATCGAAACGGACGGACGGGC
GGACGGGCCGGCGGCAATTGAGACAGGTTCACCCCGACAAGGTACCGCAT
GATCGTACGGTACAAGACGGCGTACTACACCTTTTACCTGCCGTGCGCGA
TCGGTATGATCTACGCTGGAGTCAAGGACGCCGCCAGCTACCGCCTTGCC
CGCGACATATGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACGACTT
TCTTGACTGTTTCGGCGACCCCGATGTCATCGGGAAGGTGCGCAGGGCAC
GTCTACGGTACTCTTGGTTTTGTTCAGGTTTTTAAGTGCCCGTGGCCTTT
CCGAGTGTACGGCATCCGACTATCTACACTTCCACCCAAGCAGTCAAGGA
GTTCCATTTGTTTTAGTAGTAATTTTATACGGGAATCGCTTTCCTTACTG
TCGCCCGTTTTCTGCGCTTCGCGTGACGGGCTACCGTCCCCAGGCGTTTC
GAGAGTTAACAGTCTATTTGTGGGCGTTTTGGTACCACCGTCATTCATAC
ACCGACAGTGAGATGGAATGCTGAAATGTTTGTTTCGTCATATGATGTAC
AAGTACCAAGTATATTATTGCTGTCCTCTCCCCCCCCCTCTCCTCCCCTT
GTGGGCTGAGGGCGCGATAGGTTGGGACCGATATCCAGGACAATAAATGT
AGCTGGCTCGTGGTGCAGGCACTTCAGCGAGCTGACAAGCAGCAGAAGGC
CCTTCTCTTAGAAAACTACGCCATCGACGAGGAAGAGAAGGTGATACACG
ATCGATCGCAAAAGGCATTTCGCGAAGGAGGAGGAGGAGGAGGGAATCGA
AGAGGGAAGATCGAGCGTAGGAACGTATGTTACCGCGTCGGGTATCTTCA
TGCTCCAAGATGTTCCCTGCTCGATAATATGGGATGTTGATACGATACGA
TACGATACGATATGAAGTAGGTAGGAAGTACTTCAGTTCCCTTTTGATTG
GGGAATGAATAATGTGCACTGTTTCGTGAACATGCGCAGAGTTTATAATA
GTCATGATGAAAGGAGCCGCGCGTTTGATTCTTTCCGTTGTCTCTTGATT
CGTGTCGCCCTTCGTAGATCGAGCGCGTGAAGGCGCTGTACCGCGAGCTG
GATCTTGAGAGCGTGTACTCGAAGTATGAAGAGGAGACACACAAACAGAT
CAAGGACCTCATCGCGAAGGTTGAGCACATCCCTCATGCGGTGAGAGAGA
AGTATATCTATATATACATACATATATTAGATAAATCACAACACGCACCG
CCCCGCGAGAGTGTAAATCAAGAAGAGGGCACACCACCGAGGAGGCAAGG
CGTTGCTGCAGATCGCGCAGGAACATAGATTGGCTTTCTGAGTGCCGCAC
CCTCTCAGAGATGTATATACTTTATTTTTGTGATGTTGCGAGGCCCTTAG
CTTGTTTGGGGTGTGTGTGGTGTTTATCTCCTTCTATCTCCCTCTATCTC
CTTGCCGCGTGTGGTGCTACATTTGATTTTAGCTATCAACTTTCTCCACG
TGATGACTCCCCCGCCCCCCCCCTCACCCCTCCAATATCTCCTGAATTTG
ACAGGTGTTTCACCAGTTTATCGACAAGATTTACAAGCGATCCAAGTAAG
ACCGACATGTACCTACTATATTTGGTACAAAGAACTTCTTACCTCGGTGT
CGTCAGCTCGTCAGCTTCCTTGCCTTCGGAGTGCTTCAACGCCTGCTCAG
GGAAAACTTGTCGAGGAAGAGCTAGTTTATCTAGAGTTCTATATAGTTCT
TTCATATTTTTCTGCAATCTATTTCTGTCTAGATACAGAACACGGTACAC
GGTACGCGCAGCAAACGGCCAAATTAGAGATCTCGGGGGCCCGTGGTGAT
TTTCAGGGGAGAGGCTTTGCGTCCCGCCCACATTGCGTGAGGCTTGGGAA
AGTTACGCTTTGCTCGTACGCGATCGGAACACGGTCTTCTGCTTCACTGA
GACGTAGGCTTGGTGTCGTAATCACACCCTCTTGTTGTGATATGCAGCCT
GAAAAGTGTAGTAGGCAGCAAGAGTGGCTACCGCGGCTGTCCTTGCTTGA
TCACAAGGATAAGGATATATACCCTCTATAGTGAGACGTCGGTCCGCCCG
TGAAGCACCGCAGTTCATGTAAGCGTTTAAAAGCCGTTCTGTGACTAGGG
ACATAAATGGGAAGGAAAAACATATCGTTGGTTGTTGATCGATTGGTAGT
GGGAGGCACTCGCGCGTTTGGACGAAGTGAGGGTTCTGGGATGGAAGGCG
TTTATTTGGGGCCCTTTTGCTTTCAGTGGACTACCACGAGAAGAGAGGGA
GAGAGGAGGGAAGTGAGCGCCTTCGAGTTTTCACGCCACCTGCGATCTTT
CTACTCGACTGGCTGCGCTACTTACACGCGTGTCCGCGCTTCGACGACGC
GACGTTCGATAGGATAGCCGAGTTGATTTCTTACTTCGACTCCCGTCTCA
GATATATCCCTCGTGTGTATGAGGTGGCTTACGTTTTAGGCAAGAGCTAG
TATGATGTTCTTCTATCCCCTCTCAGCACTCATTAAAAAATATGTTTTGT
TTCACACTTTTCACTGCATCGTGTGCGCTATATAGTAGATGCTATATAGT
AGATGCCATATAGTAGATGCCACTTTGCACAGCCGCCAATTCCTCCTGTA
GTTTGCTGAAACGAGGAAGAGCCATATACCCTACCATATTGTACAAACTA
AGGCAAAGAGCATGATGCAAATAGCATCATGTCGATATCGCTACTGTGTC
AAAAAGGAAAACGGTCCTCGAATCTTCGGCAGTACTATTAGATGTGTGTT
TTCACAAGTCGGAGGCAGAGGCGATGTGCTTACTGACTGTGAGTGAACGT
CTCGCGTTTATCGTTGCGTTCCTCAAAGACAAGCCAACTATGCCTCGGAG
TCGAAAACCATCGATGATCAAGTGGCGGAATTTATAATAACATATGCTTA
TCGGAGAGGATATCCTAGGCGCCGCAATCCCTGGCATTAACGCGCACGTC
ATGAAGTCTTTCTCATCGTCGTGAGGCTGCCTGCCAATCAAGTGGCAGCA
CTGAAACAGCGATGTTGGAAGTATTGCGTGGCGACGGGCGTGGTCAAGTA
AGTTGTGATCATGCAGACAGCGAACGTGATCGCGCAGTAGGGATATGGCG
CACAAACGAGTATTTGTTTTGCCAGGTTTGCCCTGCTTTGGCGCACGTTT
CCTGTCGTAAGTTGGCCACAAGCTTCTTGACAGCCACGGTGCACTGGTAT
ATTGTGAGATTGAAGCTCGGACGGCTGCAGGCTTGGCAGGCAAACGAGCC
GCCAAATAGATTCAGCGACCTAATGCTTTTTTTAACCATTTGCAAGGACT
ATACTGGGGAAGCGTTTCGCAGAGTTGTTGTCGGAGATAGGTCCGTGCTC
CAAGTCCTTAGGGTGGTGCCCACGGAATCTGGTAGTGCGAATGATACCCC
AGGAGGTAAGTGGCGAAACTAGGGCATATTGGGGAGGATCCGTTGTGTAG
GGGTGCAGTGAAATAGTTTAAAGGGGTCTGGGTTTTGTTAAGAGACAGTT
GGAATTCAGAAGTCGTACCCGGGAGTATAAGCTACGCCCCCTCCTCTCTA
GGCCCTTCATAGCCTAGTCTGGCGGGATAGCAGCACAAGCCCTACTTGCG
CCCCAGGGTCCACCAATGCTGCCTCTGCTAATGTTACCGACTCCACACTG
GGTAGCTCCCCCTCTATGGGCACCGGGCGGGGCCGTCATCAGCCACCCAA
ACGTTGGCTTTTAATAGTCATCTACCACGAGATAGTGATGAAGGATACCG
CAAAATGCTGCGGAATACTGTAGCACCTTCTCCATAGTACCCGCGCCTCC
TATTCAACAATATCCGTTCAAGAGCTCTCATGCATACTGCGACTCATGGC
CGATCCCGACCCACATATGACAAATATATGACCCGCCCATGTGGATATCG
ACATGACCCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig4786:2..4264+

>mRNA_H-elongata_contig4786.11924.1 ID=mRNA_H-elongata_contig4786.11924.1|Name=mRNA_H-elongata_contig4786.11924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig4786:2..4264+ (Himanthalia elongata Himel1 dioecious)
ATGATCGTACGGTACAAGACGGCGTACTACACCTTTTACCTGCCGTGCGC
GATCGGTATGATCTACGCTGGAGTCAAGGACGCCGCCAGCTACCGCCTTG
CCCGCGACATATGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACGAC
TTTCTTGACTGTTTCGGCGACCCCGATGTCATCGGGAAGATGATCGTACG
GTACAAGACGGCGTACTACACCTTTTACCTGCCGTGCGCGATCGGTATGA
TCTACGCTGGAGTCAAGGACGCCGCCAGCTACCGCCTTGCCCGCGACATA
TGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACGACTTTCTTGACTG
TTTCGGCGACCCCGATGTCATCGGGAAGGTTGGGACCGATATCCAGGACA
ATAAATGTAGCTGGCTCGTGGTGCAGGCACTTCAGCGAGCTGACAAGCAG
CAGAAGGCCCTTCTCTTAGAAAACTACGCCATCGACGAGGAAGAGAAGGT
TGGGACCGATATCCAGGACAATAAATGTAGCTGGCTCGTGGTGCAGGCAC
TTCAGCGAGCTGACAAGCAGCAGAAGGCCCTTCTCTTAGAAAACTACGCC
ATCGACGAGGAAGAGAAGATCGAGCGCGTGAAGGCGCTGTACCGCGAGCT
GGATCTTGAGAGCGTGTACTCGAAGTATGAAGAGGAGACACACAAACAGA
TCAAGGACCTCATCGCGAAGGTTGAGCACATCCCTCATGCGATCGAGCGC
GTGAAGGCGCTGTACCGCGAGCTGGATCTTGAGAGCGTGTACTCGAAGTA
TGAAGAGGAGACACACAAACAGATCAAGGACCTCATCGCGAAGGTTGAGC
ACATCCCTCATGCGGTGTTTCACCAGTTTATCGACAAGATTTACAAGCGA
TCCAAGTAAGTGTTTCACCAGTTTATCGACAAGATTTACAAGCGATCCAA
GTAA
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