mRNA_H-elongata_contig47701.11905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47701.11905.1
Unique NamemRNA_H-elongata_contig47701.11905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A6H5JKE5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE5_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 3.580e-124
Identity = 226/374 (60.43%), Postives = 245/374 (65.51%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDAD--------------------SESNSAGDDIDSSPPSTAR----VTADRVRERGDGRXXXXXXXXRE-------------------REGSGLGGAQRSRSSSKG-----------SPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHP-EGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPDQ 957
            G  + TEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQS  WRDMRLDP+GPEVMKSILRQIL+G RFLHE G++HRDLKPSNLIVSL P                               +  GD  +SS               VR+ G    XXXXXXX                     R G     A       +G           + +LLR+ADFSSAVDE A+  GLYGA GP Q EETLQYAPPEVLFDPETAYSA+RP+SYD WSIGVILLELILGTPEVFTVDQRT AILDRDLAFEDD  RAKAH+LAAMADMCIYS PG H  EG   PLGD AVV+ERCTLADLG A+HTRD LD+GFPDQ
Sbjct:  299 GEAVPTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSYFWRDMRLDPEGPEVMKSILRQILEGTRFLHETGVVHRDLKPSNLIVSLSPVAAXXXXXXXXXXXXXXXXXXXXPGPRPGSGDPTGDGYESSXXXXXXXXXXTETTPVRDWGSDSSXXXXXXXXXXXXXXXXXXXXXXPEXRXXRTGGSFESADVGGEHEQGXXXXXXXXXRRTRLLLRVADFSSAVDEGAMPTGLYGAEGPGQSEETLQYAPPEVLFDPETAYSAQRPESYDMWSIGVILLELILGTPEVFTVDQRTRAILDRDLAFEDDEVRAKAHLLAAMADMCIYSGPGSHDGEGSSSPLGDTAVVNERCTLADLGGAVHTRDALDIGFPDQ 672          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: D8LCY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY1_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 8.910e-122
Identity = 212/326 (65.03%), Postives = 229/326 (70.25%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKG------SPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHP-EGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPDQ 957
            G  + TEMWLVFRDEG SLRHYLYTEREAEGFVLHGQS  WRDMRLDP+GPEVMKSILRQ L+G RFLHE G++HRDLKPSNLIVSL P                      P +   T       GDGR           E + +GG    R           + +LLR+ADFSSAVDE A+ AGLYG  GP Q EETLQYAPPEVLFDPETAYSA+RP+SYD WSIGVILLELILGTPEVFTVDQRT AILDRDLAFEDD  RAKA  LA   DMCIYS PG H  EG   PLGD AVV+ERCTLADLG A+HTRD LD+GFPDQ
Sbjct:  281 GEAVPTEMWLVFRDEGTSLRHYLYTEREAEGFVLHGQSYFWRDMRLDPEGPEVMKSILRQTLEGTRFLHETGVVHRDLKPSNLIVSLPPVAXXXXXXXXXXXXX--XXGPRPGSGDPT-------GDGRRTGGSF-----ESADVGGEHEQRXXXXXXXXXXRTRLLLRVADFSSAVDEGAMPAGLYGTEGPGQSEETLQYAPPEVLFDPETAYSAQRPESYDMWSIGVILLELILGTPEVFTVDQRTRAILDRDLAFEDDEVRAKALFLAVRGDMCIYSGPGSHDGEGSSSPLGDTAVVNERCTLADLGGAVHTRDALDIGFPDQ 592          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: T0RAV5_SAPDV (CMGC protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RAV5_SAPDV)

HSP 1 Score: 192 bits (487), Expect = 1.360e-51
Identity = 112/318 (35.22%), Postives = 152/318 (47.80%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
             LP Q E+WLVF +EG+SLRHY+Y+   A   VL   S  W  MR++P G +V++ I+RQ+L G   +H +G++HRD+KPSN++V+   T                                                                    PVL+++ADF SAVD  A K  LYG  GP+Q EET +Y PPEVL   +  Y    P SYD WS+GV+ LELILG+P VF +  R  A LD  L  + D  + K+++L    + CIY      P  ++    D A+V   C      K I  RDPL+ GF D
Sbjct:  210 SLPTQ-ELWLVFYEEGISLRHYMYSSTRASASVLVQPSLFWHRMRVEPGGADVLREIMRQLLQGVAAVHAKGMVHRDIKPSNILVNNQDT--------------------------------------------------------------------PVLVKLADFGSAVDTYANKV-LYGERGPSQAEETREYQPPEVLLHGDIPYDPALPTSYDMWSVGVVFLELILGSPHVFAITSRARAKLDVHLQHKSDETKRKSYLLHVFTEFCIYE-----PPSLYRYHNDYALVHSDCNFGTFNKTIQARDPLERGFQD 452          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A6G0W433_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W433_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.950e-49
Identity = 106/312 (33.97%), Postives = 149/312 (47.76%), Query Frame = 1
Query:   19 EMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
            E+WLVF DEG+SLRHY+YT+  +   VL   S  W  MR++ +G  V+K ++RQ+++G   LH+RGI HRD+KPSN+++S                                                                     K +   +++AD  SAVDE      LYG  GP+Q EET +Y PPEVLF  +  Y    P SYD WS+GV+ LELILG+P VF++  R  A +D  L  + +A R+K+++L    + CI+      P  +H    D A+V   C        I  RDPL +GF D
Sbjct:  248 ELWLVFYDEGISLRHYMYTKTRSLSSVLFEPSLFWERMRVEEEGALVLKEMVRQLIEGVAALHDRGITHRDIKPSNILIS---------------------------------------------------------------------KDTQFAVKLADLGSAVDEHTHHY-LYGTKGPSQAEETREYQPPEVLFHGDVPYDYANPTSYDMWSVGVVFLELILGSPHVFSISSRARAKVDARLHDKSEAVRSKSYLLHVFTEFCIFQ-----PPSLHRYHQDYALVHSACNFGTFNTTIQQRDPLGIGFQD 484          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A485L2U0_9STRA (Aste57867_14927 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2U0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.880e-48
Identity = 114/316 (36.08%), Postives = 154/316 (48.73%), Query Frame = 1
Query:    7 PLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
            PLQ E+WLVF DEG+SLRHY+YT+  +   VL   S  W+ MR+D +G +V+K ILRQ+L G   LH+RGI HRD+K   L   +   V                    PS   ++ D                                     +  ++++AD  SAVDE   +  LYG  GPTQ EET +Y PPEVLF  +  Y    P SYD WS+GV+ LELILG+P VF++  R  A +D  L  + +A R K+++L  + + CI+      P  ++    D AVV   C        I  RDPL  GF D
Sbjct:  260 PLQ-ELWLVFFDEGISLRHYIYTKTRSLSSVLFEPSLFWKRMRVDEEGGDVLKEILRQLLQGVAALHDRGITHRDIKVRRLSWHIHLIV-----------------DEQPSNILISQD-------------------------------------AQFVVKLADLGSAVDEFTHRH-LYGEKGPTQGEETREYQPPEVLFHGDVPYDYATPTSYDMWSVGVVFLELILGSPHVFSITSRARAKVDAHLHDKSEAMRTKSYLLHVLTEFCIFQ-----PPSLYRYHEDYAVVHSTCNFGTFNTTIQKRDPLGRGFQD 514          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A024U529_9STRA (CMGC protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U529_9STRA)

HSP 1 Score: 182 bits (461), Expect = 5.910e-48
Identity = 110/319 (34.48%), Postives = 157/319 (49.22%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFD-PETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
            G PLQ E+WLVF DEG+SLRHY+YT+ +++ FV+   S  W+ MR + +G  V + ILRQ+L     LHERGI HRD+KPSN+++S                  DD                                                     +++++ADF SAVD     A +YG  GPTQ EET +Y PPEVLF   +  Y    P SYD WS+GV+ LEL+LG+P VF++  R  A +D  +  + +A R+K+++L  + + CI+      P  +     D A+V + C        I +RDPL +G  D
Sbjct:  217 GTPLQ-ELWLVFYDEGISLRHYIYTKTKSQKFVVVEPSLFWKRMRTEAEGAGVYREILRQLLQAVAALHERGITHRDIKPSNILIS-----------------HDDN----------------------------------------------------LVVKLADFGSAVDAFT-HAHMYGDKGPTQAEETREYQPPEVLFHGDDVPYDYATPTSYDMWSVGVVALELLLGSPHVFSISSRARAKVDAHMRDKPEATRSKSYLLHVLTEFCIFQ-----PPSLARYHEDYALVHDACNFGTFNTTIQSRDPLGLGLQD 459          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A1W0A7P0_9STRA (Phosphatase 1L n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7P0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.600e-47
Identity = 106/312 (33.97%), Postives = 148/312 (47.44%), Query Frame = 1
Query:   19 EMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
            E+WLVF DEG+SLR Y+YT   +   VL   S  W  MR++  G  V+K I+RQ+L     +H +GI+HRD+KPSN++++                                                                    ++GSPVL+++ADF SAVD+ A +  LY   GP+Q EET +Y PPEVL   +  Y    P SYD WS+GV+ LELILG+P VF++  R+ A LD  L  + +  + K+++L    + CIY      P  +     D A+V   C      K I  RDPL  GF D
Sbjct:  214 ELWLVFYDEGISLREYMYTTTRSASSVLFQPSLFWHRMRVEDGGSHVLKEIMRQLLQAVAAVHAKGIVHRDIKPSNILIN--------------------------------------------------------------------NRGSPVLVKLADFGSAVDDYAHEF-LYENKGPSQAEETREYQPPEVLLHGDIPYDPVVPTSYDIWSVGVVFLELILGSPHVFSISSRSRAKLDIHLQHKSEDTKLKSYLLHVFTEFCIYE-----PPSLFRYHNDYALVHSDCNFGTFNKTIQNRDPLHRGFQD 451          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A7S0HI00_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HI00_9CRYP)

HSP 1 Score: 166 bits (421), Expect = 4.490e-46
Identity = 106/278 (38.13%), Postives = 138/278 (49.64%), Query Frame = 1
Query:   16 TEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQ-SNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIV--SLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAARAKAHVLAAMADMCIYSRPGGHP 840
            TE+WLVF+ EG SLR YLY E   EG ++H Q S+ WRD+R  P GP ++K ++RQIL G  F H + + HRDLKP NLIV   L  + L P  + E  S                                                         ++L++ADF SAVD  +++  LYG  GP+QEEETL YAPPEVLF      +A RP SYD WS GVI LE++LGT +VF +D RT A +   +         +A +L A  +  IY  P   P
Sbjct:   42 TELWLVFKFEGQSLRQYLY-ETNVEGSLIHFQTSHFWRDLRQSPHGPRMIKEVMRQILQGVSFCHTKNVTHRDLKPDNLIVHVQLPSSGLVPSFEEERFS---------------------------------------------------------IVLKLADFGSAVDAYSVEH-LYGTGGPSQEEETLDYAPPEVLFGDGVPCAAMRPHSYDLWSAGVIFLEMLLGTSKVFQIDGRTRAYMTVKMPNAPPKMIEQACLLKAFMEYRIYPPPSHSP 260          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A0A7CPJ9_9STRA (Secreted protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CPJ9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.720e-45
Identity = 113/330 (34.24%), Postives = 155/330 (46.97%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDL------------AFEDDAARAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIHTRDPLDVGFPD 954
            G+ LQ E+WLVF +EG+SLRHY+Y    +E  V+   S+ W  MR++  G EV+K ++RQ+L G   +H RGI+HRD+K        VP    P  D+             PS   V                                     ++ +PVL+++ADF SAVD  A    LYG  GP+Q EET +Y PPEVL   +  Y   RP SYD WS+GV+ LELILG+P VF +  R  A LD  L            A   + A+ K+++L    + CIY      P  +     + A+V   C      + +  RDPL  GF D
Sbjct:  203 GVGLQ-ELWLVFYEEGISLRHYMYATTRSESSVVFQPSHFWHRMRVEDSGGEVLKEVMRQLLQGVAAVHARGIVHRDIK--------VPRHPVPGPDTA------------PSNILVN------------------------------------NQDTPVLVKLADFGSAVDGYANDV-LYGEKGPSQAEETREYQPPEVLLHGDIPYDPARPTSYDMWSVGVVFLELILGSPHVFAISSRARAKLDVHLQHKARALDSAYKASRSEEAKRKSYLLQVFTEFCIYE-----PPSLVRYHNEYALVHSDCNFGTFNQTLQARDPLGRGFQD 469          
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Match: A0A836CIC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC2_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.080e-44
Identity = 96/234 (41.03%), Postives = 127/234 (54.27%), Query Frame = 1
Query:    1 GLPLQTEMWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSILRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDIDSSPPSTARVTADRVRERGDGRXXXXXXXXREREGSGLGGAQRSRSSSKGSPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETAYSAERPDSYDAWSIGVILLELILGTPE 702
            G+  Q E+WLVF DEG SL+ YLYTE     FV+HGQS+ WR +RL  +G + M+ +LRQ+L     LH+ GI+HRDLKPSNLIV       TP+                                               S               P+ LR+ADFSSA+D  A++ GL+G  GPT++E ++ YAPPEVLFD + A S+ RPD+YD WS+GVI LE++LGTP+
Sbjct:  145 GINGQDELWLVFHDEGASLQKYLYTELVTRDFVVHGQSDFWRTLRLTREGHDTMRDVLRQLLSAVATLHDLGIVHRDLKPSNLIV-------TPEHPQNQ------------------------------------------SXXXXXXXXXXXXXXXPLSLRVADFSSAIDASALEQGLFGLEGPTRQELSIDYAPPEVLFDADAALSSARPDAYDMWSVGVIFLEMVLGTPQ 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47701.11905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKE5_9PHAE3.580e-12460.43Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LCY1_ECTSI8.910e-12265.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
T0RAV5_SAPDV1.360e-5135.22CMGC protein kinase n=1 Tax=Saprolegnia diclina (s... [more]
A0A6G0W433_9STRA1.950e-4933.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L2U0_9STRA2.880e-4836.08Aste57867_14927 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U529_9STRA5.910e-4834.48CMGC protein kinase n=1 Tax=Aphanomyces invadans T... [more]
A0A1W0A7P0_9STRA1.600e-4733.97Phosphatase 1L n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A7S0HI00_9CRYP4.490e-4638.13Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A0A7CPJ9_9STRA1.720e-4534.24Secreted protein n=2 Tax=Achlya hypogyna TaxID=120... [more]
A0A836CIC2_9STRA1.080e-4441.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47701contigH-elongata_contig47701:478..3601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue2.5e-103
Seed eggNOG ortholog2880.D8LCY1
KEGG koko:K17501
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-01_001480.1
Exons6
Model size957
Cds size936
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.8702004-CDS-H-elongata_contig47701:477..5931622930787.8702004-CDS-H-elongata_contig47701:477..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 478..593 -
1691679570.3981192-CDS-H-elongata_contig47701:477..5931691679570.3981192-CDS-H-elongata_contig47701:477..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 478..593 -
1622930787.8883677-CDS-H-elongata_contig47701:671..7031622930787.8883677-CDS-H-elongata_contig47701:671..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 672..703 -
1691679570.4180872-CDS-H-elongata_contig47701:671..7031691679570.4180872-CDS-H-elongata_contig47701:671..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 672..703 -
1622930787.9033298-CDS-H-elongata_contig47701:1380..14871622930787.9033298-CDS-H-elongata_contig47701:1380..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 1381..1487 -
1691679570.4278493-CDS-H-elongata_contig47701:1380..14871691679570.4278493-CDS-H-elongata_contig47701:1380..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 1381..1487 -
1622930787.9183571-CDS-H-elongata_contig47701:2154..22411622930787.9183571-CDS-H-elongata_contig47701:2154..2241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 2155..2241 -
1691679570.4363725-CDS-H-elongata_contig47701:2154..22411691679570.4363725-CDS-H-elongata_contig47701:2154..2241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 2155..2241 -
1622930787.9367394-CDS-H-elongata_contig47701:2628..30871622930787.9367394-CDS-H-elongata_contig47701:2628..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 2629..3087 -
1691679570.4449377-CDS-H-elongata_contig47701:2628..30871691679570.4449377-CDS-H-elongata_contig47701:2628..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 2629..3087 -
1622930787.9561293-CDS-H-elongata_contig47701:3445..35801622930787.9561293-CDS-H-elongata_contig47701:3445..3580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 3446..3580 -
1691679570.4543266-CDS-H-elongata_contig47701:3445..35801691679570.4543266-CDS-H-elongata_contig47701:3445..3580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47701 3446..3580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.9810622-UTR-H-elongata_contig47701:3580..36011622930787.9810622-UTR-H-elongata_contig47701:3580..3601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47701 3581..3601 -
1691679570.4645128-UTR-H-elongata_contig47701:3580..36011691679570.4645128-UTR-H-elongata_contig47701:3580..3601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47701 3581..3601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47701.11905.1prot_H-elongata_contig47701.11905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47701 478..3580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47701.11905.1

>prot_H-elongata_contig47701.11905.1 ID=prot_H-elongata_contig47701.11905.1|Name=mRNA_H-elongata_contig47701.11905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
MWLVFRDEGMSLRHYLYTEREAEGFVLHGQSNLWRDMRLDPKGPEVMKSI
LRQILDGARFLHERGILHRDLKPSNLIVSLVPTVLTPDADSESNSAGDDI
DSSPPSTARVTADRVRERGDGRRHRGDGGRREREGSGLGGAQRSRSSSKG
SPVLLRIADFSSAVDEEAIKAGLYGATGPTQEEETLQYAPPEVLFDPETA
YSAERPDSYDAWSIGVILLELILGTPEVFTVDQRTHAILDRDLAFEDDAA
RAKAHVLAAMADMCIYSRPGGHPEGVHWPLGDRAVVDERCTLADLGKAIH
TRDPLDVGFPDQ
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mRNA from alignment at H-elongata_contig47701:478..3601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47701.11905.1 ID=mRNA_H-elongata_contig47701.11905.1|Name=mRNA_H-elongata_contig47701.11905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3124bp|location=Sequence derived from alignment at H-elongata_contig47701:478..3601- (Himanthalia elongata Himel1 dioecious)
GGGCTTCCGCTTCAGACGGAGATGTGGCTGGTGTTCCGGGACGAGGGCAT GTCGTTGCGACACTACCTGTACACCGAACGGGAGGCCGAGGGTTTCGTGC TCCACGGGCAGAGCAACTTGTGGAGGGACATGCGCCTCGACCCCAAGGGT CCGGAGGTAGCGAACAGACACTAGGCAGAACGAAGCCCCTCCCCCCCCCC GACTTCTTGACCGATCCAGCGGACCTGTGACAGACCTCCTGCGGGTTGCC TGCATGGTGGACGTTTGTTCCTCGGGTGGGACGGGGGGTTTTGATAGTCG ACCCTAGGCACTTCGCTCTGAACTGTCGTCGTTGGCTGTTGTTTTTGAAT GACTGCACCATCTCGTCTACATCGGCGGTTACGGCGTGCTTCCGACCTCA GCAACTTTTATTCTGGTGATGATCCCCCCGCCCCTCTCATCCCCTCCTAT ACAAACACGTCCCCCGGCGCATCTTTTGACCTTTGCCGATCGCCGCCTTT TTTCGAATGCGCAGGTGATGAAGTCCATCCTGCGCCAGATTCTGGATGGC GCGCGCTTCCTCCACGAGAGGGGCATCCTCCACCGCGATCTGAAGCCCTC CAACCTCATCGTCTCCCTGGTCCCCACGGTTTTGACACCGGACGCCGATT CCGAATCCAACTCCGCCGGGGATGATATCGATTCGTCCCCGCCATCAACC GCGCGCGTGACTGCCGATCGGGTACGGGAGAGGGGTGACGGACGACGCCA CAGAGGGGACGGAGGCAGGAGAGAACGCGAGGGTTCTGGGCTTGGAGGTG CGCAACGGTCACGTTCGTCGTCGAAGGGTTCTCCCGTCTTGCTAAGAATC GCCGACTTTTCGAGCGCGGTGGATGAAGAGGCGATCAAGGCGGGACTGTA CGGGGCGACGGGGCCCACGCAGGAGGAAGAGACGCTGCAGTACGCGCCCC CGGAGGTGCTCTTCGATCCCGAGGTGTGCACTGCGCCCGGCTCGCGCTCG ATATCCCCCCCCCCCTCCTCTCCTCCCACGCTGAGGGCAACTTACTGTCA AAAACGTAAAACACTACACACACAACGAGGTACGAGTTGCAGCGCAGTCT TTGCCGTGGTTCTTTTTCTTTGTAAGACGTACTGCATGCATGCGCGGCGG AAAGAGAGGAAATTTCTTCGCAGTAGGGTAAGTACCGCACGCGCCGGACC CCGACGTTGACGACGCCCGAGCTCGGGGGATTCCTGCGCCTTCCTCGCGT CCCTGAAGCTAAGCTTGTTGATTCTCCCTTGATGTCTATTTCAAACTCCC TTCCTCCCGGTTACGTGTCGTGCGCGCGACTCACTGGTCGTCCAATCCAA CCACGTCAAGACGGCGTACTCTGCGGAGCGTCCGGATTCGTACGACGCGT GGTCCATCGGCGTAATACTCCTGGAGCTTATCCTTGGGACCCCCGAGGTT TGGGATAACGGTTACGTTATGGTGGCTGCGAGACAGCAGGCGTGCTTGAC AGCAGGTTCCCCCTATCCGCGGTACATAACAAAACACGCCTACTTTTTTG TGTGTTTGCCGAGCCCGTTTGTTCGGTGGTTAACACATTGCCGGCTGCGC GAAGGGGCAATGGCGTCTGTTACAGAGAAACAAAACACGATCCGTTGTGC GAGCATGCGCGCGAGGGTGAACAACAGTCTTGTGGCAGGGAACGCAGATC ACTGGTTGAAGTGAAAGCGCTCGACAAAAGGCGCCGCCGACATGTTGGAT GTGCGTCGCGGCTTGTATGCGCTAGGTGGTTGACAAATTGCCGGCCGCGT GACGGGGCAATGACGTTTCTTGCAGATGGAAAAAACATGGCCATGTTCTG TTGCGTGAGCGTGCGCGCGAGTGCGAGCAACATCCTTGTAGCAGGGAACG CAGATCAATGGTTGAAATGAAAGCGCGTGACAAAAGGCGTCGTCAGCATG TTGGGTGCGCGTTGCGGCTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTATGTGTGTCCCTCCTACCCGGGTCGATATTTTTTCGTT TTAATTTTTGAGCCCTTGCTGCTGCTTCCCCCCCACCTACGTCCCGTTTT CCGGAACGAAGCAGGTGTTCACGGTAGATCAGCGTACCCATGCGATTCTG GACCGCGATCTGGCCTTCGAAGACGATGCCGCACGAGCCAAGGCCCACGT TCTCGCCGCTATGGCGGATATGTGAGGGAGATCCCCGTCCCGCACAGCTC TAATATGAGACTTTACCCCGCACAGCTCTAATACTATCTATCCATCTGCT GGCGGAACAAAAATATGGTCAAAACAGAGATCGATTCTCACGCTTCATGT CATTATCTTTGTGGGGGGGCGGTTATCCCAGGTCTTGTCCACTGTTAACT TTTTGGGGGGGGGGTTCGGCAGTTTTGTTGAGCGACTTAGTTTTGTTATT GTTTAAAGATATATGAACTCATCCCAACCCTCCGAATGTCCATATACCTT TGCCCCGTGAGAGGTGCAGTCCAGGGGATATCACCAACTATAACCAGGTT CGAGTGTGTACATAAGCTACCTATGAGCACAAAATCGGCAGGTCATGTGA TAAATCATGTTCCCCAATAATAATAAATTCATCGAGTCAACGGTGTAATG TCGGGGAGATGTACATCATTATCATATTATACACTTCGATTATTCATCAA GTCGGGGCGCCAAACCAGAGCTATAGTATAGCCTATAGTATAGCTTATAG TATAGCTTAGAGAGTGGGGGCTGTAAAGAGGAAGAGGGGATGATTTAGTG TTTTTTTTTCTTTTTCTGTTTTGTTGGGCTGCAGTTTAGGCAAATTAGAG ATGTTGATAAAAGTCCGGTATTGTATATCGTCTTCCTCCCGGTACTAGGT GTATATATTCTCGGCCGGGGGGGCATCCCGGTGGCCAGGGCAGCGGCACG CGATCGAGGCGAGGCGGACAACACGCGGACCCTCCCGAGCACGCGGCGGG GCACAGAGAGGGAGTGCACTGGCCGCTGGGAGATAGGGCGGTCGTGGATG AGAGGTGTACCTTGGCGGACCTTGGCAAGGCGATCCATACGAGGGATCCG CTCGACGTCGGGTTTCCTGATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig47701:478..3601-

>mRNA_H-elongata_contig47701.11905.1 ID=mRNA_H-elongata_contig47701.11905.1|Name=mRNA_H-elongata_contig47701.11905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig47701:478..3601- (Himanthalia elongata Himel1 dioecious)
ATGTGGCTGGTGTTCCGGGACGAGGGCATGTCGTTGCGACACTACCTGTA
CACCGAACGGGAGGCCGAGGGTTTCGTGCTCCACGGGCAGAGCAACTTGT
GGAGGGACATGCGCCTCGACCCCAAGGGTCCGGAGATGTGGCTGGTGTTC
CGGGACGAGGGCATGTCGTTGCGACACTACCTGTACACCGAACGGGAGGC
CGAGGGTTTCGTGCTCCACGGGCAGAGCAACTTGTGGAGGGACATGCGCC
TCGACCCCAAGGGTCCGGAGGTGATGAAGTCCATCCTGCGCCAGATTCTG
GATGGCGCGCGCTTCCTCCACGAGAGGGGCATCCTCCACCGCGATCTGAA
GCCCTCCAACCTCATCGTCTCCCTGGTCCCCACGGTTTTGACACCGGACG
CCGATTCCGAATCCAACTCCGCCGGGGATGATATCGATTCGTCCCCGCCA
TCAACCGCGCGCGTGACTGCCGATCGGGTACGGGAGAGGGGTGACGGACG
ACGCCACAGAGGGGACGGAGGCAGGAGAGAACGCGAGGGTTCTGGGCTTG
GAGGTGCGCAACGGTCACGTTCGTCGTCGAAGGGTTCTCCCGTCTTGCTA
AGAATCGCCGACTTTTCGAGCGCGGTGGATGAAGAGGCGATCAAGGCGGG
ACTGTACGGGGCGACGGGGCCCACGCAGGAGGAAGAGACGCTGCAGTACG
CGCCCCCGGAGGTGCTCTTCGATCCCGAGGTGATGAAGTCCATCCTGCGC
CAGATTCTGGATGGCGCGCGCTTCCTCCACGAGAGGGGCATCCTCCACCG
CGATCTGAAGCCCTCCAACCTCATCGTCTCCCTGGTCCCCACGGTTTTGA
CACCGGACGCCGATTCCGAATCCAACTCCGCCGGGGATGATATCGATTCG
TCCCCGCCATCAACCGCGCGCGTGACTGCCGATCGGGTACGGGAGAGGGG
TGACGGACGACGCCACAGAGGGGACGGAGGCAGGAGAGAACGCGAGGGTT
CTGGGCTTGGAGGTGCGCAACGGTCACGTTCGTCGTCGAAGGGTTCTCCC
GTCTTGCTAAGAATCGCCGACTTTTCGAGCGCGGTGGATGAAGAGGCGAT
CAAGGCGGGACTGTACGGGGCGACGGGGCCCACGCAGGAGGAAGAGACGC
TGCAGTACGCGCCCCCGGAGGTGCTCTTCGATCCCGAGACGGCGTACTCT
GCGGAGCGTCCGGATTCGTACGACGCGTGGTCCATCGGCGTAATACTCCT
GGAGCTTATCCTTGGGACCCCCGAGACGGCGTACTCTGCGGAGCGTCCGG
ATTCGTACGACGCGTGGTCCATCGGCGTAATACTCCTGGAGCTTATCCTT
GGGACCCCCGAGGTGTTCACGGTAGATCAGCGTACCCATGCGATTCTGGA
CCGCGATCTGGCCTTCGAAGACGATGCCGCACGAGCCAAGGCCCACGTTC
TCGCCGCTATGGCGGATATGTGTTCACGGTAGATCAGCGTACCCATGCGA
TTCTGGACCGCGATCTGGCCTTCGAAGACGATGCCGCACGAGCCAAGGCC
CACGTTCTCGCCGCTATGGCGGATATGTGTATATATTCTCGGCCGGGGGG
GCATCCCGGTGTATATATTCTCGGCCGGGGGGGCATCCCGAGGGAGTGCA
CTGGCCGCTGGGAGATAGGGCGGTCGTGGATGAGAGGTGTACCTTGGCGG
ACCTTGGCAAGGCGATCCATACGAGGGATCCGCTCGACGTCGGGTTTCCT
GATCAGAGGGAGTGCACTGGCCGCTGGGAGATAGGGCGGTCGTGGATGAG
AGGTGTACCTTGGCGGACCTTGGCAAGGCGATCCATACGAGGGATCCGCT
CGACGTCGGGTTTCCTGATCAG
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