mRNA_H-elongata_contig47587.11887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47587.11887.1
Unique NamemRNA_H-elongata_contig47587.11887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.000e-71
Identity = 102/140 (72.86%), Postives = 125/140 (89.29%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV 420
            VK  ++EMY+AT +QFK EMAA I G RLLHLN+DLWVDKFSSLKYIG++LFY+DR W LRSRLIAVRQFNPT E+LE +RLSALL++Y+ ++ EE+ LD +++FSATSDAGSDV+RLCD+LLPGLWEWCVC+M+NCALV
Sbjct:   56 VKQMVVEMYAATASQFKMEMAAQIGGMRLLHLNLDLWVDKFSSLKYIGIRLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALV 195          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.340e-67
Identity = 97/140 (69.29%), Postives = 124/140 (88.57%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV 420
            VK  ++EMY+AT +QFK EMAA I G RLLHL++DLWVDKFSSLKY+G+ LFY+DR W LRSRLIAVRQFNPT E+LE +RLSAL+++++ ++ EE+ LD +++FSATSD+GSDV+RLCD+LLPGLWEWCVC+M+NCALV
Sbjct:  209 VKQMVVEMYAATASQFKMEMAAQIGGMRLLHLSLDLWVDKFSSLKYVGIPLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGLWEWCVCHMINCALV 348          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.140e-55
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   70 ITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV 420
            I G RLLH N+DLWVDKFSSLKYIG++LFY DR W LRSRLIAVRQFNPT E+LE +RLSALL++Y+ ++ EE+ LD +++FSATSDAGSDV+RLCD+LLPGLWEWCVC+M+NCALV
Sbjct:  158 IGGMRLLHHNLDLWVDKFSSLKYIGIRLFYADRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALV 274          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.670e-53
Identity = 89/141 (63.12%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVR-RLCDILLPGLWEWCVCYMLNCALV 420
            V   ++E Y+ATTAQF+AE+ A++ G   LHL++DLWVDK S+L ++GV+LFYIDR W L+SRL+AVRQFNPT EM E+ RLSA+LE+Y+T + EEF LD +M+FSATSDAGSDV+ RLC  L+P LW+ CVC+MLNC+LV
Sbjct:   45 VAKMVVEYYAATTAQFQAEITAEVGGVPRLHLDLDLWVDKSSTLMFMGVRLFYIDREWRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHTLIPRLWKSCVCHMLNCSLV 185          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.300e-51
Identity = 83/136 (61.03%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLN 408
            VK  ++E Y+AT AQFK EMA ++ G   LHL+++LWVDK SSLKY+GV+ FY++  W+L+S L+AVRQFNPT E L++ RLS LLE+YV  + EEF +DA+++FSATSDAG DV+RLC +LLPGL EWCVC+ML+
Sbjct:  156 VKRMVVECYAATAAQFKEEMATEVAGVPCLHLSLELWVDKSSSLKYMGVRFFYVNSVWQLKSYLLAVRQFNPTPETLKNERLSELLEKYVFAVLEEFGIDASLLFSATSDAGGDVKRLCSVLLPGLREWCVCHMLS 291          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5JM59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM59_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.110e-46
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSD 342
            VK  +++MY+AT +Q+K EMAA I G RLLHLN DLWVDKFSSLK IG++LFYIDR W LRSRLIAVRQFNPT E+LE +RL ALL++Y+ ++ EE+ LD +++FSATSDAGSD
Sbjct:   37 VKQVVVDMYAATASQYKMEMAAQIGGMRLLHLNRDLWVDKFSSLKCIGIRLFYIDRTWVLRSRLIAVRQFNPTKELLEDNRLLALLQKYLESVLEEYGLDVSLLFSATSDAGSD 150          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5KHW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.580e-46
Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVR-RLCDILLPGL 378
            V   ++E Y+ATTAQFKAE+AA++ G   LHL+++LWVDK S+L ++GV+LFYIDR W LRSRL+AVRQFNPT EM E+ RLS LLE+++T + E F LD  M+FSATSDAGSDV+ RLC IL+P L
Sbjct:   58 VAKMVVEYYAATTAQFKAEIAAEVGGVPRLHLDLELWVDKSSTLMFMGVRLFYIDREWRLRSRLLAVRQFNPTPEMFENERLSKLLEKHLTDVLE-FGLDVYMLFSATSDAGSDVKHRLCYILIPRL 183          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.310e-40
Identity = 63/93 (67.74%), Postives = 82/93 (88.17%), Query Frame = 1
Query:  142 GVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV 420
            G++L+Y+DR W LRSRLIAVRQFNPT E+LE +RLS LL++Y+  +  E+ LD +++FSATSDAGSDV+RLCD+LLPGLWEWCVC+M+NCA+V
Sbjct:    3 GIRLYYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSTLLQKYLERVLAEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMMNCAVV 95          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR)

HSP 1 Score: 128 bits (322), Expect = 4.330e-34
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRL--LHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV 420
            ++  ++++Y  TT+    ++  +I+   L  LH+N++LW  + S  ++ G+QLFY+ R WE+++ L+AVR F P+  +L    LS +L+ +   +  EFN+  + I S+TSD GSDV+RLC +L+P  WEWC+ +MLNC LV
Sbjct:   56 IRKLVVKIYIGTTSSLMKKLRKEISVTPLAFLHINVNLWTSRLSKDRFFGIQLFYVSREWEVKAVLLAVRHFCPSGNLLPGRSLSDILQLWTNKIILEFNVSYDKILSSTSDTGSDVKRLCSVLIPESWEWCLPHMLNCVLV 197          
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.650e-21
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 VKHKIIEMYSATTAQFKAEMAADITGGRL--LHLNIDLWVDKFSSLKYIGVQLFYIDRNWELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSATSDAGSDVRRLC-DILLPG---LWEWCVCYML 405
            VKH I E+Y AT       M  ++    L  LH NID+W DK S  K++G+ +FY+D N+EL+  L++++++ P    L   R S +L + + ++ EEF L  + + S T+D+GSDV+ +  + L P    LW WC C+++
Sbjct:  226 VKHLITELYVATKKVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLM 366          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47587.11887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KEC8_9PHAE1.000e-7172.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWS6_9PHAE3.340e-6769.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ82_9PHAE4.140e-5574.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.670e-5363.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI2.300e-5161.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JM59_9PHAE2.110e-4667.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHW5_9PHAE2.580e-4662.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNY1_9PHAE8.310e-4067.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2V3ILY8_9FLOR4.330e-3439.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6H5JJJ9_9PHAE5.650e-2136.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47587contigH-elongata_contig47587:2989..3661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog2880.D7G3L2
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47587.11887.1prot_H-elongata_contig47587.11887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47587 3010..3661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.9154892-UTR-H-elongata_contig47587:2988..30091622930785.9154892-UTR-H-elongata_contig47587:2988..3009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47587 2989..3009 +
1691679569.4580934-UTR-H-elongata_contig47587:2988..30091691679569.4580934-UTR-H-elongata_contig47587:2988..3009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47587 2989..3009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.930624-CDS-H-elongata_contig47587:3009..31301622930785.930624-CDS-H-elongata_contig47587:3009..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47587 3010..3130 +
1691679569.4692135-CDS-H-elongata_contig47587:3009..31301691679569.4692135-CDS-H-elongata_contig47587:3009..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47587 3010..3130 +
1622930785.9662316-CDS-H-elongata_contig47587:3383..36611622930785.9662316-CDS-H-elongata_contig47587:3383..3661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47587 3384..3661 +
1691679569.4819393-CDS-H-elongata_contig47587:3383..36611691679569.4819393-CDS-H-elongata_contig47587:3383..3661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47587 3384..3661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47587.11887.1

>prot_H-elongata_contig47587.11887.1 ID=prot_H-elongata_contig47587.11887.1|Name=mRNA_H-elongata_contig47587.11887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MYSATTAQFKAEMAADITGGRLLHLNIDLWVDKFSSLKYIGVQLFYIDRN
WELRSRLIAVRQFNPTSEMLESSRLSALLEEYVTTLFEEFNLDANMIFSA
TSDAGSDVRRLCDILLPGLWEWCVCYMLNCALV
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mRNA from alignment at H-elongata_contig47587:2989..3661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47587.11887.1 ID=mRNA_H-elongata_contig47587.11887.1|Name=mRNA_H-elongata_contig47587.11887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig47587:2989..3661+ (Himanthalia elongata Himel1 dioecious)
GTGAAGCACAAGATCATCGAGATGTACTCCGCGACCACTGCTCAGTTCAA GGCGGAGATGGCCGCCGACATTACCGGTGGGCGGCTTCTACACCTTAACA TCGACCTCTGGGTCGACAAGTTCTCGAGTTTGAAGTACATTGGTAAGCAA CAGGTGGCCGGTATTGCTTTCTCTAGACGATCGTCAATCTAAATCTATAT CACAGGTTAACGTATTTTTCGATAGCTGAGGTGAAGATGTCCCCCTTGTG CCGTTGATTTGTTTGTGGGAAAATGTAAATGTAATGTACGTAACGGATAT TTTGAACGACTCTTGGTCGTCTCCCATCAGCATAATTTATTTATCCTACA ATGCACGTGTGGCGTGTGTACCGCTCCCGATATTTTTCAATCCAGGTGTT CAGTTGTTCTACATCGACCGGAACTGGGAGCTGAGATCCCGCCTCATCGC CGTTCGACAGTTCAACCCTACGTCGGAGATGCTCGAGAGCAGCCGCCTCT CTGCGCTTCTCGAGGAGTACGTCACGACCCTGTTTGAGGAGTTCAACCTT GACGCCAACATGATCTTCTCAGCAACAAGCGACGCCGGCAGCGATGTGAG GCGGCTCTGTGACATACTGCTTCCGGGGCTATGGGAGTGGTGCGTGTGCT ACATGCTCAACTGTGCTCTGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig47587:2989..3661+

>mRNA_H-elongata_contig47587.11887.1 ID=mRNA_H-elongata_contig47587.11887.1|Name=mRNA_H-elongata_contig47587.11887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig47587:2989..3661+ (Himanthalia elongata Himel1 dioecious)
ATGTACTCCGCGACCACTGCTCAGTTCAAGGCGGAGATGGCCGCCGACAT
TACCGGTGGGCGGCTTCTACACCTTAACATCGACCTCTGGGTCGACAAGT
TCTCGAGTTTGAAGTACATTGATGTACTCCGCGACCACTGCTCAGTTCAA
GGCGGAGATGGCCGCCGACATTACCGGTGGGCGGCTTCTACACCTTAACA
TCGACCTCTGGGTCGACAAGTTCTCGAGTTTGAAGTACATTGGTGTTCAG
TTGTTCTACATCGACCGGAACTGGGAGCTGAGATCCCGCCTCATCGCCGT
TCGACAGTTCAACCCTACGTCGGAGATGCTCGAGAGCAGCCGCCTCTCTG
CGCTTCTCGAGGAGTACGTCACGACCCTGTTTGAGGAGTTCAACCTTGAC
GCCAACATGATCTTCTCAGCAACAAGCGACGCCGGCAGCGATGTGAGGCG
GCTCTGTGACATACTGCTTCCGGGGCTATGGGAGTGGTGCGTGTGCTACA
TGCTCAACTGTGCTCTGGTTGTGTTCAGTTGTTCTACATCGACCGGAACT
GGGAGCTGAGATCCCGCCTCATCGCCGTTCGACAGTTCAACCCTACGTCG
GAGATGCTCGAGAGCAGCCGCCTCTCTGCGCTTCTCGAGGAGTACGTCAC
GACCCTGTTTGAGGAGTTCAACCTTGACGCCAACATGATCTTCTCAGCAA
CAAGCGACGCCGGCAGCGATGTGAGGCGGCTCTGTGACATACTGCTTCCG
GGGCTATGGGAGTGGTGCGTGTGCTACATGCTCAACTGTGCTCTGGTT
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