mRNA_H-elongata_contig47442.11864.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 241 bits (615), Expect = 9.400e-71 Identity = 116/151 (76.82%), Postives = 127/151 (84.11%), Query Frame = 1
Query: 37 SGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDALLGCPLRASADDWDWASFR 489
+G VSKPFTIDLE G+TGFIKA+ F+EGFHEPALALLYEPIQTC GRLAS RSTCRL +LS+NL QGRAPVIW+V +LPHDSWDLV VP PIGG+QVISTNAV+HVN SEV SILAVNGYARATV+ ALL CPLR DW W SFR
Sbjct: 283 AGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFR 433
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM) HSP 1 Score: 103 bits (256), Expect = 1.800e-22 Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDAL 435
F+ F+EP LA+L+EP QT PG+L S + +C L+V+SL + Q P+I + +LPH L+++P P+GGI +IS NA+IHVN S +AVNGYA +T + +L
Sbjct: 237 FLHDFYEPTLAILFEPCQTWPGKLNSTKDSCSLVVVSLLISQKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000A2A51A4 (cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A51A4) HSP 1 Score: 102 bits (253), Expect = 4.520e-22 Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
F+ G++EP L +LYEPI+T GRLA R TC L+ +SLN+ + PVIW++S LP+DS+ ++AVP PIGG+ V STNA++++N S
Sbjct: 210 FLHGYYEPTLLILYEPIKTWAGRLAMRRDTCALVAVSLNMSERVHPVIWQLSSLPYDSYSVLAVPKPIGGVLVFSTNALLYLNQS 294
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI0009E1A363 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A363) HSP 1 Score: 99.8 bits (247), Expect = 2.890e-21 Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 22 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
GA SG R + +TI+L+ + + I F+ G++EP L LLYEP+QT PGRLA TC L+ +SLNL Q PV+W +++LP D ++AVP PIGG+ + +TN+++++N S
Sbjct: 182 GAFTGSGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 300
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000C05354C (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C05354C) HSP 1 Score: 98.6 bits (244), Expect = 3.440e-21 Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 22 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
G SG R + +TI+L+ + + I F+ G++EP L +LYEP+QT PGRLA TC L+ +SLNL Q PV+W +++LP D ++AVP PIGG+ V +TN+++++N S
Sbjct: 182 GTFTASGDRSPLLPSYTINLKDIHEKLCNIIDIQ-FLHGYYEPTLLILYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTYPVVWSLNNLPFDCSQVLAVPKPIGGVLVCATNSLLYLNQS 300
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI001CF1DE45 (cleavage and polyadenylation specificity factor subunit 1-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF1DE45) HSP 1 Score: 98.6 bits (244), Expect = 7.310e-21 Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 37 SGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
SG R + +TI+L+ + + I F+ G++EP L LLYEP+QT PGRLA TC L+ +SLNL Q PV+W +++LP D ++AVP PIGG+ + +TN+++++N S
Sbjct: 186 SGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALIAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 299
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A4Y2GB93_ARAVE (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GB93_ARAVE) HSP 1 Score: 97.1 bits (240), Expect = 2.210e-20 Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 37 SGVRPTVSKPFTIDLEAVGV-TGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
SGV+ V +TI + +K F++G++EP L LL+EP++T PGR A TC +L LSLN+ Q PVIW VS LP DS +AVP PIGG+ +++ N+++++N S
Sbjct: 170 SGVKTPVLASYTIKFSDIDEKVNNVKDFQFLQGYYEPTLLLLHEPLRTWPGRTAVRHDTCAILALSLNINQRVHPVIWTVSGLPFDSLYAMAVPKPIGGVLLVAVNSLLYLNQS 283
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: L8GPK4_ACACA (CPSF A subunit region protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPK4_ACACA) HSP 1 Score: 96.7 bits (239), Expect = 3.440e-20 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 55 VSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRA-----PVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVN 369
V F +DL A+G+ +K VF++G++EP L +LYEP QT GR+A R+TC +SLNL Q R PV+W LP+D+ L+AVP PIGG +STN+++++N
Sbjct: 204 VKPSFLLDLRAMGIIN-VKDFVFLQGYYEPTLLILYEPTQTWSGRVAVNRNTCVAAAVSLNLWQHRGQTSAHPVVWSAEFLPYDTQRLIAVPGPIGGALALSTNSLLYLN 312
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A1Y1Y6W0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6W0_9FUNG) HSP 1 Score: 96.3 bits (238), Expect = 4.680e-20 Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 118 VFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYA 411
+F+E ++EP LA+LYEP+QT L++ + TC L V+SL+L + PVI+ + LP+D L+ VP PIGGI ++S NA+IHV+ S +AVNG+A
Sbjct: 204 IFLEDYYEPTLAILYEPVQTNTVLLSTRKDTCALAVVSLDLTKKLYPVIYSIDSLPYDCIKLIPVPKPIGGILIVSANALIHVDQSSPGQGIAVNGHA 301
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A0L0HAP2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAP2_SPIPD) HSP 1 Score: 95.5 bits (236), Expect = 8.780e-20 Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSIL-AVNGY 408
F+ GF EP LA+LYEPIQT GRLA+ + T L+V+SL++ Q PV+++V LP+++ L+ VP P+GG+ V+S NA+IHV+ + V + AVN Y
Sbjct: 241 FLYGFFEPTLAILYEPIQTWTGRLAARKDTKSLIVVSLDITQRSYPVLFKVDHLPYNATSLIPVPPPVGGLVVLSPNALIHVDQTSVPGVACAVNSY 337 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47442.11864.1 >prot_H-elongata_contig47442.11864.1 ID=prot_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp GGEAFVIGASRVSGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPALback to top mRNA from alignment at H-elongata_contig47442:314..1884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47442.11864.1 ID=mRNA_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at H-elongata_contig47442:314..1884- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47442:314..1884- >mRNA_H-elongata_contig47442.11864.1 ID=mRNA_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig47442:314..1884- (Himanthalia elongata Himel1 dioecious)back to top |