mRNA_H-elongata_contig47442.11864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47442.11864.1
Unique NamemRNA_H-elongata_contig47442.11864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 9.400e-71
Identity = 116/151 (76.82%), Postives = 127/151 (84.11%), Query Frame = 1
Query:   37 SGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDALLGCPLRASADDWDWASFR 489
            +G    VSKPFTIDLE  G+TGFIKA+ F+EGFHEPALALLYEPIQTC GRLAS RSTCRL +LS+NL QGRAPVIW+V +LPHDSWDLV VP PIGG+QVISTNAV+HVN SEV SILAVNGYARATV+ ALL CPLR    DW W SFR
Sbjct:  283 AGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFR 433          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM)

HSP 1 Score: 103 bits (256), Expect = 1.800e-22
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDAL 435
            F+  F+EP LA+L+EP QT PG+L S + +C L+V+SL + Q   P+I  + +LPH    L+++P P+GGI +IS NA+IHVN S     +AVNGYA +T + +L
Sbjct:  237 FLHDFYEPTLAILFEPCQTWPGKLNSTKDSCSLVVVSLLISQKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000A2A51A4 (cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A51A4)

HSP 1 Score: 102 bits (253), Expect = 4.520e-22
Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
            F+ G++EP L +LYEPI+T  GRLA  R TC L+ +SLN+ +   PVIW++S LP+DS+ ++AVP PIGG+ V STNA++++N S
Sbjct:  210 FLHGYYEPTLLILYEPIKTWAGRLAMRRDTCALVAVSLNMSERVHPVIWQLSSLPYDSYSVLAVPKPIGGVLVFSTNALLYLNQS 294          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI0009E1A363 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A363)

HSP 1 Score: 99.8 bits (247), Expect = 2.890e-21
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   22 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
            GA   SG R  +   +TI+L+ +   +   I    F+ G++EP L LLYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ + +TN+++++N S
Sbjct:  182 GAFTGSGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 300          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI000C05354C (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C05354C)

HSP 1 Score: 98.6 bits (244), Expect = 3.440e-21
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   22 GASRVSGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
            G    SG R  +   +TI+L+ +   +   I    F+ G++EP L +LYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ V +TN+++++N S
Sbjct:  182 GTFTASGDRSPLLPSYTINLKDIHEKLCNIIDIQ-FLHGYYEPTLLILYEPLQTWPGRLAMRHDTCALVAVSLNLSQRTYPVVWSLNNLPFDCSQVLAVPKPIGGVLVCATNSLLYLNQS 300          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: UPI001CF1DE45 (cleavage and polyadenylation specificity factor subunit 1-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF1DE45)

HSP 1 Score: 98.6 bits (244), Expect = 7.310e-21
Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   37 SGVRPTVSKPFTIDLEAVG--VTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
            SG R  +   +TI+L+ +   +   I    F+ G++EP L LLYEP+QT PGRLA    TC L+ +SLNL Q   PV+W +++LP D   ++AVP PIGG+ + +TN+++++N S
Sbjct:  186 SGDRSPLLPSYTINLKDIHDKLCNIIDVQ-FLHGYYEPTLLLLYEPLQTWPGRLAMRHDTCALIAVSLNLSQRTHPVVWSLNNLPFDCSQVLAVPKPIGGVLICATNSLLYLNQS 299          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A4Y2GB93_ARAVE (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GB93_ARAVE)

HSP 1 Score: 97.1 bits (240), Expect = 2.210e-20
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   37 SGVRPTVSKPFTIDLEAVGV-TGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDS 375
            SGV+  V   +TI    +      +K   F++G++EP L LL+EP++T PGR A    TC +L LSLN+ Q   PVIW VS LP DS   +AVP PIGG+ +++ N+++++N S
Sbjct:  170 SGVKTPVLASYTIKFSDIDEKVNNVKDFQFLQGYYEPTLLLLHEPLRTWPGRTAVRHDTCAILALSLNINQRVHPVIWTVSGLPFDSLYAMAVPKPIGGVLLVAVNSLLYLNQS 283          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: L8GPK4_ACACA (CPSF A subunit region protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPK4_ACACA)

HSP 1 Score: 96.7 bits (239), Expect = 3.440e-20
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   55 VSKPFTIDLEAVGVTGFIKASVFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRA-----PVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVN 369
            V   F +DL A+G+   +K  VF++G++EP L +LYEP QT  GR+A  R+TC    +SLNL Q R      PV+W    LP+D+  L+AVP PIGG   +STN+++++N
Sbjct:  204 VKPSFLLDLRAMGIIN-VKDFVFLQGYYEPTLLILYEPTQTWSGRVAVNRNTCVAAAVSLNLWQHRGQTSAHPVVWSAEFLPYDTQRLIAVPGPIGGALALSTNSLLYLN 312          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A1Y1Y6W0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6W0_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 4.680e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  118 VFMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYA 411
            +F+E ++EP LA+LYEP+QT    L++ + TC L V+SL+L +   PVI+ +  LP+D   L+ VP PIGGI ++S NA+IHV+ S     +AVNG+A
Sbjct:  204 IFLEDYYEPTLAILYEPVQTNTVLLSTRKDTCALAVVSLDLTKKLYPVIYSIDSLPYDCIKLIPVPKPIGGILIVSANALIHVDQSSPGQGIAVNGHA 301          
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Match: A0A0L0HAP2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAP2_SPIPD)

HSP 1 Score: 95.5 bits (236), Expect = 8.780e-20
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  121 FMEGFHEPALALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWDLVAVPDPIGGIQVISTNAVIHVNDSEVLSIL-AVNGY 408
            F+ GF EP LA+LYEPIQT  GRLA+ + T  L+V+SL++ Q   PV+++V  LP+++  L+ VP P+GG+ V+S NA+IHV+ + V  +  AVN Y
Sbjct:  241 FLYGFFEPTLAILYEPIQTWTGRLAARKDTKSLIVVSLDITQRSYPVLFKVDHLPYNATSLIPVPPPVGGLVVLSPNALIHVDQTSVPGVACAVNSY 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47442.11864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI9.400e-7176.82Cleavage and polyadenylation specificity factor CG... [more]
A0A397HFG4_9GLOM1.800e-2246.67Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
UPI000A2A51A44.520e-2252.94cleavage and polyadenylation specificity factor su... [more]
UPI0009E1A3632.890e-2142.50cleavage and polyadenylation specificity factor su... [more]
UPI000C05354C3.440e-2141.67cleavage and polyadenylation specificity factor su... [more]
UPI001CF1DE457.310e-2142.61cleavage and polyadenylation specificity factor su... [more]
A0A4Y2GB93_ARAVE2.210e-2042.98Cleavage and polyadenylation specificity factor su... [more]
L8GPK4_ACACA3.440e-2044.55CPSF A subunit region protein n=1 Tax=Acanthamoeba... [more]
A0A1Y1Y6W0_9FUNG4.680e-2046.94Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A0L0HAP2_SPIPD8.780e-2048.45Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47442contigH-elongata_contig47442:314..1884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue2.1e-61
Seed eggNOG ortholog2880.D7G8W8
KEGG koko:K14401
KEGG Pathwayko03015,map03015
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons4
Model size493
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47442.11864.1prot_H-elongata_contig47442.11864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47442 314..1884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.3603225-CDS-H-elongata_contig47442:313..4691622930783.3603225-CDS-H-elongata_contig47442:313..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 314..469 -
1691679568.3438637-CDS-H-elongata_contig47442:313..4691691679568.3438637-CDS-H-elongata_contig47442:313..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 314..469 -
1622930783.3778286-CDS-H-elongata_contig47442:768..8581622930783.3778286-CDS-H-elongata_contig47442:768..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 769..858 -
1691679568.357235-CDS-H-elongata_contig47442:768..8581691679568.357235-CDS-H-elongata_contig47442:768..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 769..858 -
1622930783.3938344-CDS-H-elongata_contig47442:1162..13071622930783.3938344-CDS-H-elongata_contig47442:1162..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 1163..1307 -
1691679568.3652442-CDS-H-elongata_contig47442:1162..13071691679568.3652442-CDS-H-elongata_contig47442:1162..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 1163..1307 -
1622930783.4102018-CDS-H-elongata_contig47442:1783..18841622930783.4102018-CDS-H-elongata_contig47442:1783..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 1784..1884 -
1691679568.3735478-CDS-H-elongata_contig47442:1783..18841691679568.3735478-CDS-H-elongata_contig47442:1783..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47442 1784..1884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47442.11864.1

>prot_H-elongata_contig47442.11864.1 ID=prot_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
GGEAFVIGASRVSGVRPTVSKPFTIDLEAVGVTGFIKASVFMEGFHEPAL
ALLYEPIQTCPGRLASMRSTCRLLVLSLNLIQGRAPVIWRVSDLPHDSWD
LVAVPDPIGGIQVISTNAVIHVNDSEVLSILAVNGYARATVEDALLGCPL
RASADDWDWASFR*
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mRNA from alignment at H-elongata_contig47442:314..1884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47442.11864.1 ID=mRNA_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at H-elongata_contig47442:314..1884- (Himanthalia elongata Himel1 dioecious)
GGGGGAGAAGCGTTCGTGATCGGCGCGTCGCGGGTGTCCGGCGTGCGGCC CACGGTGTCCAAGCCGTTCACGATAGACCTGGAAGCCGTGGGCGTTACTG GGTGAGCCAACCGAAGCGCCGCATCTGCTTACCCTGCTTTGTTGGTTGAA ATGTTGACATACGGTCACCGTTTGCGGAGGAGGACGTCGATCCGTCTGCG TCCTCGTTCTGTGCGTCGAGTAGAAGTTTGATCTTGACGCCTCATTGGAC GCTGCGAGCACAACGCATTGCGTCCGGGACATGCGTTGTAGGTGCGTATT TTTCGTCCACCTCGCCCGAGCTGGACCGTTGTTGTGACACCCTCGAGGCA AGGGTCGGTTGAGTGCACTGAGTTATTTCTAAGTCAAGGGTCGGTAAAGA ATCGGCGCAGCGCGTCGATAGTTGACGCGGAATGACGCCGTTCCTTTTAT TACGAGCATAGTGTAATGCGAATGGACGAAAAAAACATGTCTCGTTACCG CAATGCCTATCTCGTCTCTCTCTTGTTCTTTAGCTGTTTCGATCGCTGCG CATGTACGGGCGCGTTTCATTTCCCAGTTTCATCAAGGCGTCGGTGTTCA TGGAGGGTTTCCATGAGCCCGCGCTGGCGTTGCTGTACGAACCGATCCAG ACGTGTCCGGGCCGCCTGGCGTCTATGAGGTCGACGTGCCGACTGCTTGT GCTGTCCCTCAACCTCATCCAGGTAAAACACCCTGCCCAGGGGAGGTTCT GAGGTCACACCGCTTAGCTATGACCATGTAGATGCCTTGCTAAATGCTCA AATCACGATATAGAACGCGGATGGATGAAAGGCAGTGATCATGTCGAGCT TAGTCGATGCCTTCGCGGACGACAGCAAAATCCCGCCCGAAAATGCCCCT AGAAGACAACACAAACATAAGTGTGTGGACATGTTCCTGGTTTACGGTTC TGACTCGTGGCTCGCTTGCGCTGTCAGCTCCTAGTCCATCTTCTCGCTCG TGATATCACTTAACGCCGTTCCGCAGGGACGAGCCCCGGTCATCTGGCGG GTGAGTGATCTTCCTCACGACAGCTGGGACCTCGTGGCCGTGCCTGATCC GATCGGAGGGATTCAGGTGTGATACCAGAAAATTCCTGTGAGAACACCGT GCGCTGTCCACGTTTTCTGTCCAGGGAGCACCCAAGCAGCCCCCCCCCCC ACCACCACACACACACACACACACAACATCGCGCCTTGTGTGTTTGTTGA ACGCGTCGTTCTGTTCTATGAGGGGTCTGCCGGAGACCGTGTGGCGCAGG GTGCGTGCGGTAGGTGTCCCCCACCAAGCAAGGTCGTCTGGGCGATCCCA TACTAAGACAATACAAGTGCGGCGTCCACCTCCGTTCACCGATATTGCTG GTATTGGTTTTGTAGGTGATATCCACTAACGCCGTGATCCACGTGAACGA CTCGGAAGTGCTATCGATTCTGGCGGTCAACGGATACGCGAGGGCCACGG TGGAAGACGCCCTGCTGGGTTGCCCGCTGCGTGCCAGTGCCGATGACTGG GATTGGGCCTCTTTCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig47442:314..1884-

>mRNA_H-elongata_contig47442.11864.1 ID=mRNA_H-elongata_contig47442.11864.1|Name=mRNA_H-elongata_contig47442.11864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig47442:314..1884- (Himanthalia elongata Himel1 dioecious)
GGGGGAGAAGCGTTCGTGATCGGCGCGTCGCGGGTGTCCGGCGTGCGGCC
CACGGTGTCCAAGCCGTTCACGATAGACCTGGAAGCCGTGGGCGTTACTG
GGGGGGAGAAGCGTTCGTGATCGGCGCGTCGCGGGTGTCCGGCGTGCGGC
CCACGGTGTCCAAGCCGTTCACGATAGACCTGGAAGCCGTGGGCGTTACT
GGTTTCATCAAGGCGTCGGTGTTCATGGAGGGTTTCCATGAGCCCGCGCT
GGCGTTGCTGTACGAACCGATCCAGACGTGTCCGGGCCGCCTGGCGTCTA
TGAGGTCGACGTGCCGACTGCTTGTGCTGTCCCTCAACCTCATCCAGTTT
CATCAAGGCGTCGGTGTTCATGGAGGGTTTCCATGAGCCCGCGCTGGCGT
TGCTGTACGAACCGATCCAGACGTGTCCGGGCCGCCTGGCGTCTATGAGG
TCGACGTGCCGACTGCTTGTGCTGTCCCTCAACCTCATCCAGGGACGAGC
CCCGGTCATCTGGCGGGTGAGTGATCTTCCTCACGACAGCTGGGACCTCG
TGGCCGTGCCTGATCCGATCGGAGGGATTCAGGGACGAGCCCCGGTCATC
TGGCGGGTGAGTGATCTTCCTCACGACAGCTGGGACCTCGTGGCCGTGCC
TGATCCGATCGGAGGGATTCAGGTGATATCCACTAACGCCGTGATCCACG
TGAACGACTCGGAAGTGCTATCGATTCTGGCGGTCAACGGATACGCGAGG
GCCACGGTGGAAGACGCCCTGCTGGGTTGCCCGCTGCGTGCCAGTGCCGA
TGACTGGGATTGGGCCTCTTTCCGGTGAGTGATATCCACTAACGCCGTGA
TCCACGTGAACGACTCGGAAGTGCTATCGATTCTGGCGGTCAACGGATAC
GCGAGGGCCACGGTGGAAGACGCCCTGCTGGGTTGCCCGCTGCGTGCCAG
TGCCGATGACTGGGATTGGGCCTCTTTCCGGTGA
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