mRNA_H-elongata_contig4742.11860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4742.11860.1
Unique NamemRNA_H-elongata_contig4742.11860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: UPI00165AB501 (zinc finger BED domain-containing protein 1-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165AB501)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-7
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 111
            NPL+WWK+ K+ YPLLA LARH L +P +    E +F
Sbjct:  215 NPLIWWKLNKREYPLLARLARHYLCVPGTSIASERVF 251
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BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.350e-7
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 111
            +PL WW+++  ++P LANLAR VLAIPA+QA+ E LF
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLF 258
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BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.610e-7
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 PLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 111
            PL WW++K + YP LA+LAR VL IPA QAQ E +F
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVF 515
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BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 7.750e-6
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 111
            NPL  W+ K+  YPLLA LAR VLAIP+SQAQ E +F
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVF 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00165AB5012.250e-754.05zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5JWI1_9PHAE8.350e-759.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.610e-761.11Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI7.750e-664.86Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4742contigH-elongata_contig4742:11375..11485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.975703-CDS-H-elongata_contig4742:11374..114851622930782.975703-CDS-H-elongata_contig4742:11374..11485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4742 11375..11485 +
1691679568.1822188-CDS-H-elongata_contig4742:11374..114851691679568.1822188-CDS-H-elongata_contig4742:11374..11485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4742 11375..11485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4742.11860.1prot_H-elongata_contig4742.11860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4742 11375..11485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4742.11860.1

>prot_H-elongata_contig4742.11860.1 ID=prot_H-elongata_contig4742.11860.1|Name=mRNA_H-elongata_contig4742.11860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF
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mRNA from alignment at H-elongata_contig4742:11375..11485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4742.11860.1 ID=mRNA_H-elongata_contig4742.11860.1|Name=mRNA_H-elongata_contig4742.11860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig4742:11375..11485+ (Himanthalia elongata Himel1 dioecious)
AATCCGCTGGTGTGGTGGAAGATCAAGAAGAAGAACTACCCATTGCTGGC
CAACCTGGCTCGCCATGTGCTCGCCATTCCTGCCTCACAGGCCCAGCCAG
AGCATCTCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig4742:11375..11485+

>mRNA_H-elongata_contig4742.11860.1 ID=mRNA_H-elongata_contig4742.11860.1|Name=mRNA_H-elongata_contig4742.11860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig4742:11375..11485+ (Himanthalia elongata Himel1 dioecious)
AATCCGCTGGTGTGGTGGAAGATCAAGAAGAAGAACTACCCATTGCTGGC
CAACCTGGCTCGCCATGTGCTCGCCATTCCTGCCTCACAGGCCCAGCCAG
AGCATCTCTTTAATCCGCTGGTGTGGTGGAAGATCAAGAAGAAGAACTAC
CCATTGCTGGCCAACCTGGCTCGCCATGTGCTCGCCATTCCTGCCTCACA
GGCCCAGCCAGAGCATCTCTTT
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