prot_H-elongata_contig4742.11860.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4742.11860.1
Unique Nameprot_H-elongata_contig4742.11860.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length37
Homology
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: UPI00165AB501 (zinc finger BED domain-containing protein 1-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165AB501)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-7
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 37
            NPL+WWK+ K+ YPLLA LARH L +P +    E +F
Sbjct:  215 NPLIWWKLNKREYPLLARLARHYLCVPGTSIASERVF 251          
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.350e-7
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 37
            +PL WW+++  ++P LANLAR VLAIPA+QA+ E LF
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLF 258          
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.610e-7
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0
Query:    2 PLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 37
            PL WW++K + YP LA+LAR VL IPA QAQ E +F
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVF 515          
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 7.750e-6
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF 37
            NPL  W+ K+  YPLLA LAR VLAIP+SQAQ E +F
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVF 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4742.11860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00165AB5012.250e-754.05zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5JWI1_9PHAE8.350e-759.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.610e-761.11Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI7.750e-664.86Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 1..37
e-value: 1.2E-10
score: 41.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4742contigH-elongata_contig4742:11375..11485 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4742.11860.1mRNA_H-elongata_contig4742.11860.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4742 11375..11485 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4742.11860.1 ID=prot_H-elongata_contig4742.11860.1|Name=mRNA_H-elongata_contig4742.11860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
NPLVWWKIKKKNYPLLANLARHVLAIPASQAQPEHLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf