mRNA_H-elongata_contig47403.11858.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: D8LPW9_ECTSI (Putative S-adenosylmethionine-dependent methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW9_ECTSI) HSP 1 Score: 191 bits (485), Expect = 8.020e-53 Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 3
Query: 708 RGVWVCGGAERLR-------QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKKK 1073
R +CG +++ + VLYNPR++GLDAP+DV+ VTPPYEEVVY +LV+AL+ SDLV DT+VV+EYPVELGCMPHAIGDG+MVGLRNRRYGRTVVG WVYLP+GQ D+LDSRPEE VSIKKK
Sbjct: 235 RNANLCGFSDQAKAVKGDVMDVLYNPRRYGLDAPFDVITVTPPYEEVVYTELVKALSVSDLVAQDTLVVIEYPVELGCMPHAIGDGTMVGLRNRRYGRTVVGVWVYLPSGQFGDMLDSRPEEFVSIKKK 363
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A835Z8R5_9STRA (Putative S-adenosylmethionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R5_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.520e-37 Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 3
Query: 747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKKK 1073
+VL P FGLDAPYDVV +TPPY EVVY DL+ A +S LV DTIVV+EYPVELGC+PH IGDG +VGLRNRRYGRTV+G ++ PTG+ L DSRPEE +S+KK+
Sbjct: 244 RVLSQPSAFGLDAPYDVVTITPPYAEVVYGDLIAAAASSPLVREDTIVVIEYPVELGCLPHVIGDGRLVGLRNRRYGRTVLGVYICRPTGRLY-LADSRPEEFISLKKQ 351
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: B8BT17_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT17_THAPS) HSP 1 Score: 117 bits (293), Expect = 1.420e-26 Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 3
Query: 708 RGVWVCGGAERLRQV-------LYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIG---DGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
R + CGG + V L P G+D YD+V + PPYEE+VYADL+ A+ S+LV DT++++EYPVELGC+PHAIG G ++G+RNR+YGRTV+ ++ PTG + +SRPEE ++I
Sbjct: 111 RNIVRCGGEPIAKVVCTDAFRALRQPETVGIDPSCKYDLVTLCPPYEEIVYADLLDAVANSELVTEDTVILIEYPVELGCLPHAIGREDGGVLIGIRNRKYGRTVIAMYIVNPTGARE-TAESRPEEFITI 240
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A6V1VNJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VNJ1_HETAK) HSP 1 Score: 116 bits (291), Expect = 1.320e-25 Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 3
Query: 753 LYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIK 1067
L +P ++G D +D+V VTPPYEEVVYADLV+A+ S V D +VVLEYPVELG +PH +GDG ++GLRN+RYGRTV+ ++ P+G+ + + +PEE +K
Sbjct: 211 LADPARYGADHRFDLVTVTPPYEEVVYADLVQAVADSPAVGEDCVVVLEYPVELGSLPHLLGDGRLIGLRNKRYGRTVIATYIKNPSGKLE--YNPKPEEFERLK 313
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A4D9CWU6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWU6_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.810e-25 Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query: 738 RLRQVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEE 1052
R +VL P++ G+ +D++ +TPPYEEVVYADL+R + S V D+++V+EYPVELG +P IG G ++GLRNRRYGRTV+ + PTG+ D RPEE
Sbjct: 81 RAEEVLRQPKRLGVIGTFDLISITPPYEEVVYADLIRDVMESPAVAEDSLIVIEYPVELGSLPFNIGKGRLLGLRNRRYGRTVLAIYAVRPTGRRSG--DLRPEE 183
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: R1FAT4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FAT4_EMIHU) HSP 1 Score: 111 bits (277), Expect = 7.920e-25 Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3
Query: 747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHD 1025
VL +P + GL PYD+V VTPPYEEVVYA+L+ A+ AS L+ D +V +EYPVELG P +G G +VGLRNRRYGRTVV +V P+G+ D
Sbjct: 85 SVLADPSRHGLQGPYDLVTVTPPYEEVVYAELMGAICASPLLGEDCLVAVEYPVELGLFPPTLGGGRLVGLRNRRYGRTVVAIYVNRPSGKLD 177
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S2H4B1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H4B1_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.050e-24 Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 3
Query: 723 CGGAERLRQVLYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAI---GDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
CG A R L +P G+ P+ VV + PPYEE+VYADL+ A+ S LV DTI+++EYPVELGC PH I G++VG+RNR+YGRTVV ++ PTG + + +SRPEE VS+
Sbjct: 268 CGDAIR---ALSDPASMGIPDHLPFQVVTLCPPYEEIVYADLLEAVANSSLVTDDTIILIEYPVELGCFPHVIQRKDGGALVGVRNRKYGRTVVAMYIVNPTGNME-VAESRPEEFVSV 382
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: K0SD16_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SD16_THAOC) HSP 1 Score: 113 bits (282), Expect = 2.450e-24 Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query: 720 VCGGAERLRQVLYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIG---DGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
VC A R L P G+D A YD+V + PPYEE+VYA+L+ A+ S LV DT++++EYPVELGC+PH IG G ++G+RNR+YGRTV+ ++ PTG + +SRPEE ++I
Sbjct: 202 VCTDAYR---ALREPETVGIDPEAKYDLVTLCPPYEEIVYAELLDAVANSKLVKEDTVILVEYPVELGCLPHVIGREDGGVLIGVRNRKYGRTVIAMYIVNPTGDRESA-ESRPEEFITI 317
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S0IIE7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IIE7_9EUKA) HSP 1 Score: 113 bits (282), Expect = 2.940e-24 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query: 738 RLRQVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
R+ +VL NP+ +G AP+ +V + PPYEEVVYA+LV AL +S ++ D +V++EYPVELG P + +G +VGLRNRRYGRTV+ +VY P+G+ D L EE V +
Sbjct: 221 RVEEVLANPQHYGAAAPFQLVTMGPPYEEVVYAELVEALASSAVLEEDALVLIEYPVELGIFPPTLANGKLVGLRNRRYGRTVLALYVYRPSGKLD--LQPFSEEFVKL 327
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S3VWL2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWL2_EMIHU) HSP 1 Score: 111 bits (277), Expect = 3.860e-24 Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3
Query: 747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHD 1025
VL +P + GL PYD+V VTPPYEEVVYA+L+ A+ AS L+ D +V +EYPVELG P +G G +VGLRNRRYGRTVV +V P+G+ D
Sbjct: 151 SVLADPSRHGLQGPYDLVTVTPPYEEVVYAELMGAICASPLLGEDCLVAVEYPVELGLFPPTLGGGRLVGLRNRRYGRTVVAIYVNRPSGKLD 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47403.11858.1 >prot_H-elongata_contig47403.11858.1 ID=prot_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp MPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKKback to top mRNA from alignment at H-elongata_contig47403:2142..4227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47403.11858.1 ID=mRNA_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-elongata_contig47403:2142..4227- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47403:2142..4227- >mRNA_H-elongata_contig47403.11858.1 ID=mRNA_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig47403:2142..4227- (Himanthalia elongata Himel1 dioecious)back to top |