mRNA_H-elongata_contig47403.11858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47403.11858.1
Unique NamemRNA_H-elongata_contig47403.11858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: D8LPW9_ECTSI (Putative S-adenosylmethionine-dependent methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW9_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 8.020e-53
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 3
Query:  708 RGVWVCGGAERLR-------QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKKK 1073
            R   +CG +++ +        VLYNPR++GLDAP+DV+ VTPPYEEVVY +LV+AL+ SDLV  DT+VV+EYPVELGCMPHAIGDG+MVGLRNRRYGRTVVG WVYLP+GQ  D+LDSRPEE VSIKKK
Sbjct:  235 RNANLCGFSDQAKAVKGDVMDVLYNPRRYGLDAPFDVITVTPPYEEVVYTELVKALSVSDLVAQDTLVVIEYPVELGCMPHAIGDGTMVGLRNRRYGRTVVGVWVYLPSGQFGDMLDSRPEEFVSIKKK 363          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A835Z8R5_9STRA (Putative S-adenosylmethionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.520e-37
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 3
Query:  747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKKK 1073
            +VL  P  FGLDAPYDVV +TPPY EVVY DL+ A  +S LV  DTIVV+EYPVELGC+PH IGDG +VGLRNRRYGRTV+G ++  PTG+   L DSRPEE +S+KK+
Sbjct:  244 RVLSQPSAFGLDAPYDVVTITPPYAEVVYGDLIAAAASSPLVREDTIVVIEYPVELGCLPHVIGDGRLVGLRNRRYGRTVLGVYICRPTGRLY-LADSRPEEFISLKKQ 351          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: B8BT17_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT17_THAPS)

HSP 1 Score: 117 bits (293), Expect = 1.420e-26
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  708 RGVWVCGGAERLRQV-------LYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIG---DGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
            R +  CGG    + V       L  P   G+D    YD+V + PPYEE+VYADL+ A+  S+LV  DT++++EYPVELGC+PHAIG    G ++G+RNR+YGRTV+  ++  PTG  +   +SRPEE ++I
Sbjct:  111 RNIVRCGGEPIAKVVCTDAFRALRQPETVGIDPSCKYDLVTLCPPYEEIVYADLLDAVANSELVTEDTVILIEYPVELGCLPHAIGREDGGVLIGIRNRKYGRTVIAMYIVNPTGARE-TAESRPEEFITI 240          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A6V1VNJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VNJ1_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.320e-25
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  753 LYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIK 1067
            L +P ++G D  +D+V VTPPYEEVVYADLV+A+  S  V  D +VVLEYPVELG +PH +GDG ++GLRN+RYGRTV+  ++  P+G+ +   + +PEE   +K
Sbjct:  211 LADPARYGADHRFDLVTVTPPYEEVVYADLVQAVADSPAVGEDCVVVLEYPVELGSLPHLLGDGRLIGLRNKRYGRTVIATYIKNPSGKLE--YNPKPEEFERLK 313          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A4D9CWU6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWU6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.810e-25
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  738 RLRQVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEE 1052
            R  +VL  P++ G+   +D++ +TPPYEEVVYADL+R +  S  V  D+++V+EYPVELG +P  IG G ++GLRNRRYGRTV+  +   PTG+     D RPEE
Sbjct:   81 RAEEVLRQPKRLGVIGTFDLISITPPYEEVVYADLIRDVMESPAVAEDSLIVIEYPVELGSLPFNIGKGRLLGLRNRRYGRTVLAIYAVRPTGRRSG--DLRPEE 183          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: R1FAT4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FAT4_EMIHU)

HSP 1 Score: 111 bits (277), Expect = 7.920e-25
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHD 1025
             VL +P + GL  PYD+V VTPPYEEVVYA+L+ A+ AS L+  D +V +EYPVELG  P  +G G +VGLRNRRYGRTVV  +V  P+G+ D
Sbjct:   85 SVLADPSRHGLQGPYDLVTVTPPYEEVVYAELMGAICASPLLGEDCLVAVEYPVELGLFPPTLGGGRLVGLRNRRYGRTVVAIYVNRPSGKLD 177          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S2H4B1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H4B1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.050e-24
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  723 CGGAERLRQVLYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAI---GDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
            CG A R    L +P   G+    P+ VV + PPYEE+VYADL+ A+  S LV  DTI+++EYPVELGC PH I     G++VG+RNR+YGRTVV  ++  PTG  + + +SRPEE VS+
Sbjct:  268 CGDAIR---ALSDPASMGIPDHLPFQVVTLCPPYEEIVYADLLEAVANSSLVTDDTIILIEYPVELGCFPHVIQRKDGGALVGVRNRKYGRTVVAMYIVNPTGNME-VAESRPEEFVSV 382          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: K0SD16_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SD16_THAOC)

HSP 1 Score: 113 bits (282), Expect = 2.450e-24
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  720 VCGGAERLRQVLYNPRKFGLD--APYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIG---DGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
            VC  A R    L  P   G+D  A YD+V + PPYEE+VYA+L+ A+  S LV  DT++++EYPVELGC+PH IG    G ++G+RNR+YGRTV+  ++  PTG  +   +SRPEE ++I
Sbjct:  202 VCTDAYR---ALREPETVGIDPEAKYDLVTLCPPYEEIVYAELLDAVANSKLVKEDTVILVEYPVELGCLPHVIGREDGGVLIGVRNRKYGRTVIAMYIVNPTGDRESA-ESRPEEFITI 317          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S0IIE7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IIE7_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 2.940e-24
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  738 RLRQVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSI 1064
            R+ +VL NP+ +G  AP+ +V + PPYEEVVYA+LV AL +S ++  D +V++EYPVELG  P  + +G +VGLRNRRYGRTV+  +VY P+G+ D  L    EE V +
Sbjct:  221 RVEEVLANPQHYGAAAPFQLVTMGPPYEEVVYAELVEALASSAVLEEDALVLIEYPVELGIFPPTLANGKLVGLRNRRYGRTVLALYVYRPSGKLD--LQPFSEEFVKL 327          
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Match: A0A7S3VWL2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWL2_EMIHU)

HSP 1 Score: 111 bits (277), Expect = 3.860e-24
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  747 QVLYNPRKFGLDAPYDVVVVTPPYEEVVYADLVRALTASDLVIPDTIVVLEYPVELGCMPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHD 1025
             VL +P + GL  PYD+V VTPPYEEVVYA+L+ A+ AS L+  D +V +EYPVELG  P  +G G +VGLRNRRYGRTVV  +V  P+G+ D
Sbjct:  151 SVLADPSRHGLQGPYDLVTVTPPYEEVVYAELMGAICASPLLGEDCLVAVEYPVELGLFPPTLGGGRLVGLRNRRYGRTVVAIYVNRPSGKLD 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47403.11858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW9_ECTSI8.020e-5369.77Putative S-adenosylmethionine-dependent methyltran... [more]
A0A835Z8R5_9STRA2.520e-3766.06Putative S-adenosylmethionine-dependent methyltran... [more]
B8BT17_THAPS1.420e-2645.80Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6V1VNJ1_HETAK1.320e-2552.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CWU6_9STRA5.810e-2550.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
R1FAT4_EMIHU7.920e-2558.06Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2H4B1_9STRA2.050e-2450.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0SD16_THAOC2.450e-2448.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0IIE7_9EUKA2.940e-2450.46Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3VWL2_EMIHU3.860e-2458.06Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47403contigH-elongata_contig47403:2142..4227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog2880.D8LPW9
EggNOG free text desc.Conserved hypothetical protein 95
EggNOG OGs2QSWU@2759,COG0742@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionputative S-adenosylmethionine-dependent methyltransferase
Ec32 orthologEc-15_001850.1
Exons2
Model size1431
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47403.11858.1prot_H-elongata_contig47403.11858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47403 2497..2652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.8033745-UTR-H-elongata_contig47403:2141..24961622930782.8033745-UTR-H-elongata_contig47403:2141..2496Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 2142..2496 -
1691679568.0987-UTR-H-elongata_contig47403:2141..24961691679568.0987-UTR-H-elongata_contig47403:2141..2496Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 2142..2496 -
1622930782.835604-UTR-H-elongata_contig47403:2652..27061622930782.835604-UTR-H-elongata_contig47403:2652..2706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 2653..2706 -
1691679568.1251254-UTR-H-elongata_contig47403:2652..27061691679568.1251254-UTR-H-elongata_contig47403:2652..2706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 2653..2706 -
1622930782.857267-UTR-H-elongata_contig47403:3361..42271622930782.857267-UTR-H-elongata_contig47403:3361..4227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 3362..4227 -
1691679568.133732-UTR-H-elongata_contig47403:3361..42271691679568.133732-UTR-H-elongata_contig47403:3361..4227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47403 3362..4227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.814869-CDS-H-elongata_contig47403:2496..26521622930782.814869-CDS-H-elongata_contig47403:2496..2652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47403 2497..2652 -
1691679568.1135948-CDS-H-elongata_contig47403:2496..26521691679568.1135948-CDS-H-elongata_contig47403:2496..2652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47403 2497..2652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47403.11858.1

>prot_H-elongata_contig47403.11858.1 ID=prot_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MPHAIGDGSMVGLRNRRYGRTVVGAWVYLPTGQHDDLLDSRPEECVSIKK
K*
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mRNA from alignment at H-elongata_contig47403:2142..4227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47403.11858.1 ID=mRNA_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-elongata_contig47403:2142..4227- (Himanthalia elongata Himel1 dioecious)
AATTTCCGCTCTTACTGTGGGCACAAGAGACGAAAGCAAGAATCTCCGTT ACCTTCTAACAAAAACTAGTATAATAGTCTAGACTAATAGACGTCGTACT TCCTCGGCTTTAAGAGTCCGGAAGAGGTGGGTGGATCTAGGGCCGGCCCC ACAGGCGGGATATACAGTGTGGCGGTCGGCAGGATCGGTAACCAGGTACG TTGCATGGTCCCATCGGCATACAGTGAGAAACACATATATATATACTATA GACTAAATAAATAAATAAAATATAAATATATAGTGCTATTTTACCATTCC TTGCTGAATAGAAATATACGGTAGGGAAGCCAATATTATCTGCTTTCAGA GAGTGTACCAGGCTCAAAAACGGGGCCACAAATCGCCGGCCGCGGTCACG TAAGTGCGGTTCTTGCGTCGAGCCGACGGCCGGTCTTACACCGGGCTCAG CTGGCGCGCTGAGACATGTCGCATGGGGCGTGAACCGACTCAAACTCAAG CAGCTACGTGACGAGTGGATATGGATAGTCCTGTCGAGTTTGTGTCCACG CACAAGGCATGCATCCATACGCTTTTCGTCTCGTAGTCGTGGTCTCTCTC TCCTCTTCTCTTTATTTCGAGGCTTTGAAACGGCGGCACACTCAAAATTC TTCCTCGATCGCTTCTCTCTGGTGCCTTTGATTTTTTTTTCTTCTTTTTT TGTCTTCCGGGGGGTGTGGGTGTGTGGGGGTGCGGAGAGACTTCGCCAGG TCTTGTACAACCCTCGGAAATTCGGCCTAGATGCTCCCTACGACGTGGTT GTGGTGACGCCGCCGTACGAGGAAGTCGTCTACGCTGACCTCGTCAGAGC CCTTACAGCAAGCGATGTGAGTGGCGAAAAGCTAAAAGCGGGGAAGAAGG GAGGGGTAATGGTTAGGTTGGGTTGCGATGTACGCAGGGCTCCGGTTGAA GGTACCGCTGTCGCGCGGGCAAGGTGCGGGGGGTGAACGTACCCCGTGGA TTTGATTTCCGAAATCGGTCGAATAGGTCTCTCGTTAAATGCATCGTGTT TGTACCTCACCTACAAGGGGCAGTTTTGGCACCTCGGCACTCCTTGTTCC TCGAAGAATAAGCCCGATTTTATCATCTAGGATGAAAAGGTGGTGTGGGC TTCGTAGTCTTCCTCCCGTTTCCTTAACCTTTGAAAAGGAAAATCAAGAT TGAGTCGTGGCACCAGCAACATGACTTGACGCGAATAACAAGGTTCCCTG CGATCGCATGATGTCTCACGGTCTTACAGTGTCTTGCGATTACCCCCACC TGCTCTGCCGTATAGCCCGAAAATATCATTGCGACGTTGGACACATCGAG TGCGTCAGTCGCGGATCGCCCTTCAAGGTATTCTCGATTAGCACGCGACC GCCTCATCGCTTCCCGCTTCTTCGCTGGACTTCCCCCGTTCAAACGCTTT CAAAACCCTCTCGATCACCTCCATTTCTAACACGAAACGTTGACGTCGTC AAACGCCCCCCTCGCGAGCAGCTCGTCATACCGGACACCATCGTGGTCCT GGAGTACCCTGTGGAGCTCGGTTGCATGCCGCACGCCATCGGGGATGGCA GCATGGTGGGGCTGCGGAATCGACGCTACGGGCGAACAGTCGTTGGAGCA TGGGTGTACTTGCCGACGGGTCAGCACGACGATCTCCTCGATTCTAGACC GGAAGAGTGTGTCAGCATAAAAAAAAAGTGAGAAGAAGGCCCCCCCCCCC CCCCCCCCCTCCACTAACCCTTACGCTGCGAGAGGTTCTCTGTACCGTAG GCCGTGCAAGTCAGACTTCGCTGCAATCGCGAAATGAGGCGTTGTTGTCA TCCCATTTATGGGGGACAAGGAGGGTTGAGACTATGATGTCGGAGTAAAG AAGGAACTGACGTGAAGCCACACTGCAGAGAGGATGGGGGAGGGGTTGGG GAAACGACGATTTTGGTCGAGAAACAATCGCATATTAGAGCTCCTATTGA TTTCACTCTTTTCACGGGGTGGCTTACTGATCATATATTAGAGCCCTAAT GATCTCACTCTTTTTACACGGTGGCCTATTGATCAC
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Coding sequence (CDS) from alignment at H-elongata_contig47403:2142..4227-

>mRNA_H-elongata_contig47403.11858.1 ID=mRNA_H-elongata_contig47403.11858.1|Name=mRNA_H-elongata_contig47403.11858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig47403:2142..4227- (Himanthalia elongata Himel1 dioecious)
ATGCCGCACGCCATCGGGGATGGCAGCATGGTGGGGCTGCGGAATCGACG
CTACGGGCGAACAGTCGTTGGAGCATGGGTGTACTTGCCGACGGGTCAGC
ACGACGATCTCCTCGATTCTAGACCGGAAGAGTGTGTCAGCATAAAAAAA
AAGTGAATGCCGCACGCCATCGGGGATGGCAGCATGGTGGGGCTGCGGAA
TCGACGCTACGGGCGAACAGTCGTTGGAGCATGGGTGTACTTGCCGACGG
GTCAGCACGACGATCTCCTCGATTCTAGACCGGAAGAGTGTGTCAGCATA
AAAAAAAAGTGA
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