mRNA_H-elongata_contig46617.11761.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI) HSP 1 Score: 356 bits (914), Expect = 2.170e-121 Identity = 172/219 (78.54%), Postives = 191/219 (87.21%), Query Frame = 1
Query: 1 VEWHSGNKRQRQNFWTEVVHNACNGLLENDTTKGEEEFRGHLRRLTKENNVPRKRTKFDNYMAVTLGLEGDDRDKVSTRVWDAVDSRLKLEAGPGVDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
VEWHSG KRQRQ FWT+VVH AC LL ++ T+GEEEFR HLRRLTKENNVPRKR+KF NY AVTLGLEG++ DKVS R+WD VD LK E GPGVDCLLTRVQ+RWP ARHVHRLDQDTSGLVVMALT EAAREMCRQFRERVPSKTYTAV+EGRM KT KSGEV AK+RPD DNRP+QMF +E GNEA T W+R+KR++DRT VDFTPVTGRTHQ++
Sbjct: 60 VEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIR 278
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A7S2WNF9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNF9_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.690e-29 Identity = 75/175 (42.86%), Postives = 113/175 (64.57%), Query Frame = 1
Query: 148 NVPRKRTKFDNYMAVTLGLEGDDRDKVSTRVWDAVDSRL-KLEAGPGV---DCLLTRVQARWP-TARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
+VPRK KF +Y +L +E D V +VWD + S++ + EA G+ D +L+RV+ TA VHRLD +TSG+++++L + RE+ RQFRERV KTY A+V G + + + G+V + D D+RPRQ+ D+ G EA T ++ V+R +DRT+V+ PVTGRTHQ++
Sbjct: 5 SVPRKLVKFRSYAQRSLRIEAGD---VVEQVWDIISSKMAEEEAQEGLEETDSVLSRVKTHIDRTAVAVHRLDCETSGVMLVSLNVDVTRELGRQFRERVVQKTYFAMVHGVVDQDE--GQVSVPLSADPDHRPRQVVDEVKGKEATTTYRVVQRFEDRTKVELHPVTGRTHQLR 174
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A1M6B4V3_9RHOB (Pseudouridine synthase n=2 Tax=Shimia gijangensis TaxID=1470563 RepID=A0A1M6B4V3_9RHOB) HSP 1 Score: 114 bits (285), Expect = 5.630e-28 Identity = 68/141 (48.23%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 250 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
VD L + PG DCLLTR+Q +PTA VHRLD+DTSG++V LTP A R + QF +R KTY A +EGRM +KSG V + D +NRPRQM + G +A T W+ +K DD TRV +P +GRTHQ++
Sbjct: 16 VDKPAGLLSVPGRGDHLADCLLTRLQVAFPTALLVHRLDRDTSGVLVFGLTPHAQRNLSMQFEKRSTKKTYVARLEGRME--EKSGTVDLPLIVDWENRPRQMVCHDTGKQAVTDWRVLKVSDDDTRVRLSPKSGRTHQLR 154
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A7W2BME3_9HYPH (RNA pseudouridine synthase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BME3_9HYPH) HSP 1 Score: 114 bits (285), Expect = 9.260e-28 Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 250 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
+D L + PG +DCL+TR+ R+P AR VHRLD DTSG++V+A+ P A R + QF R KTY A+V+G + SG V IR D NRPRQM D G A T WQ + REDDR+R+ P+TGR+HQ++
Sbjct: 36 IDKPCGLLSVPGKGDDRLDCLITRLHKRYPQARIVHRLDLDTSGVMVIAMNPAAHRHLGLQFERRHVEKTYIALVDGNVAAD--SGRVDLPIRVDWPNRPRQMIDHAEGRSAVTDWQVLAREDDRSRIALRPLTGRSHQLR 174
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A099F4N7_9RHOB (Pseudouridine synthase n=1 Tax=Paracoccus halophilus TaxID=376733 RepID=A0A099F4N7_9RHOB) HSP 1 Score: 114 bits (284), Expect = 9.460e-28 Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 289 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
DCL+ R++A +PT VHRLD DTSG++V ALTPEA R + RQF ER KTY A + GR+ K+G V + D NRPRQM D++ G ART W+ V+ +D TRV +PVTGR+HQ++
Sbjct: 42 DCLIARLRAAFPTILLVHRLDLDTSGVMVFALTPEAQRHLSRQFEERRTKKTYVARLWGRLQ--PKTGTVDLPLIVDWPNRPRQMVDRDRGRPARTDWRVVRADDMETRVRLSPVTGRSHQLR 162
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A1G3AV14_9BACT (Pseudouridine synthase n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A1G3AV14_9BACT) HSP 1 Score: 114 bits (284), Expect = 1.180e-27 Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 289 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
DCL+ RVQ R+P AR VHRLD TSGL+V+A PE+ RE+ RQF+ R KTY A V G + SGEV +R D + RP Q+ D + G A+T WQ ++R +D R++ TPVTGRTHQ++
Sbjct: 49 DCLIHRVQKRFPKARIVHRLDFSTSGLMVIAQNPESHRELSRQFQNRETEKTYVAKVYG--CPDEPSGEVNLPLRCDLERRPLQIIDYQQGKTAQTFWQILERYEDSCRMELTPVTGRTHQLR 169
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: UPI00106F1B88 (RluA family pseudouridine synthase n=2 Tax=Paracoccus TaxID=265 RepID=UPI00106F1B88) HSP 1 Score: 113 bits (283), Expect = 1.330e-27 Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 250 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
VD L + PG DCL+ R++A +PT VHRLD DTSG++V ALTP A R + +QF R K+Y A V GRM + +G V A + D NRPRQM D E G ART W+ ++ DD TRV P+TGR+HQ++
Sbjct: 24 VDKPAGLLSVPGRGEDRADCLIARLRAAFPTVLLVHRLDLDTSGVMVFALTPHAQRHLNQQFERRQVKKSYVARVHGRMDRP--TGTVEAALIVDWPNRPRQMIDPENGRPARTDWRVIRASDDETRVRLFPLTGRSHQLR 162
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A2Z4UKY3_9HYPH (Ribosomal large subunit pseudouridine synthase A n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UKY3_9HYPH) HSP 1 Score: 113 bits (283), Expect = 1.580e-27 Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 289 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
DCL TR + +PTA VHRLD DTSG++VMA+TP A R + QF +R KTYTA V G+MT+ + G VVA I D NRPRQM D E G A T WQ + RE +RV P TGR+HQ++
Sbjct: 48 DCLETRARIEFPTATIVHRLDMDTSGILVMAMTPNAHRHLGLQFEKRKTKKTYTARVWGKMTEDE--GTVVAPIITDWPNRPRQMIDFEKGRSAETRWQVLDREAGASRVALYPHTGRSHQLR 168
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: UPI00047597A7 (RluA family pseudouridine synthase n=1 Tax=Desulfovibrio oxyclinae TaxID=63560 RepID=UPI00047597A7) HSP 1 Score: 113 bits (282), Expect = 1.780e-27 Identity = 61/126 (48.41%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 289 DCLLTRVQARWPTARH---VHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
DC++TRVQ +P R VHRLD DTSG++V+ LT A RE+ +QF +R SK Y A+++G + ++ G V +R D DNRP Q+ D E G A TLW+R+ E+ RTRV+F P+TGRTHQ++
Sbjct: 36 DCVVTRVQEMFPECRKYPTVHRLDMDTSGILVLGLTARAQRELSQQFHDREVSKRYVALLDGVLE--EEEGRVDLPLRLDVDNRPYQVVDFERGKPATTLWKRIAIENGRTRVEFVPLTGRTHQLR 159
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A2D5B3Y4_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B3Y4_9BACT) HSP 1 Score: 113 bits (283), Expect = 1.790e-27 Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 289 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 657
DCL +R +A +P AR VHRLD+DTSG++VMA + RE+ RQF +R K Y AVV GR+ D G + A +R D D+ PRQ+ D E G A+T ++ ++R DDRTR++ +PVTGR+HQ++
Sbjct: 53 DCLASRAEAAFPGARIVHRLDRDTSGVIVMARDADTHRELSRQFHDREVDKQYEAVVGGRLAVDD--GVIDAPMRKDLDDPPRQIIDDEQGRSAKTGFRVIERMDDRTRMELSPVTGRSHQLR 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46617.11761.1 >prot_H-elongata_contig46617.11761.1 ID=prot_H-elongata_contig46617.11761.1|Name=mRNA_H-elongata_contig46617.11761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp VEWHSGNKRQRQNFWTEVVHNACNGLLENDTTKGEEEFRGHLRRLTKENNback to top mRNA from alignment at H-elongata_contig46617:102..1858- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46617.11761.1 ID=mRNA_H-elongata_contig46617.11761.1|Name=mRNA_H-elongata_contig46617.11761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1757bp|location=Sequence derived from alignment at H-elongata_contig46617:102..1858- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46617:102..1858- >mRNA_H-elongata_contig46617.11761.1 ID=mRNA_H-elongata_contig46617.11761.1|Name=mRNA_H-elongata_contig46617.11761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig46617:102..1858- (Himanthalia elongata Himel1 dioecious)back to top |