mRNA_H-elongata_contig46418.11733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46418.11733.1
Unique NamemRNA_H-elongata_contig46418.11733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A6H5J694_9PHAE (HORMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J694_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 1.300e-101
Identity = 153/184 (83.15%), Postives = 165/184 (89.67%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNT--QAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDE 552
            V SVLYQRGVYHPD FAREAKY ITTLVTTDE LKKYL+NVI+QLK WLL+ ELQRLVLVIVGTDSG+TLERWTFNVHKEERP L+DGSN   Q  RKS+K I +EIQNVIRQITSSVTFLP+LDEPCSFDLLVYT NDA VP+GWD+SD +CIKDSSEV LRSFSTKIHKVDTVVSYKN+ DE
Sbjct:   31 VNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPALKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDE 214          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A836CIY9_9STRA (DNA-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 3.240e-65
Identity = 109/193 (56.48%), Postives = 143/193 (74.09%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKG--------WLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPV-LQDGS-NTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDEL 555
            + S+LYQRG+Y  +SF+++ KY +T + T D GLK YL+NVI+Q+ G        W+L  E+QRLVLVI G +SGE LERW F+V  E  P  L++ S N  A RKS+K+I  EIQ +IRQIT+SVTFLP+L EPC+FDLLVYT+  A VP  W+ESD + I DSS+VKLRSFSTK+HKVDT+V+++N+ D L
Sbjct:   29 INSILYQRGIYPAESFSKQQKYGLTMMTTEDMGLKAYLDNVIKQMHGKWPSKLCRWMLRDEVQRLVLVISGVESGEALERWAFHVQGEPAPAPLKEASGNAPAPRKSQKDICNEIQAIIRQITASVTFLPLLSEPCAFDLLVYTNKSATVPIQWEESDPRYIADSSQVKLRSFSTKVHKVDTLVAFRNQSDAL 221          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A7S1G3K4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3K4_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.310e-64
Identity = 102/182 (56.04%), Postives = 135/182 (74.18%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDE 552
            + S+LYQRG+Y P+SF+  ++Y ++ LVTTD+GLK YL  V+ QL  WL   E+Q+LV+VI G DSG+ LERW FNV  ++      G     V KS KEI+KEIQ +IRQIT+SV+FLP+LDEPC+FDLLVYTD D  VP  W+ESD + I +S+EV+LRSF+TK+HKVD +V+YK   D+
Sbjct:   31 INSILYQRGIYPPESFSAVSQYGLSMLVTTDDGLKGYLSQVLGQLSSWLSRGEVQKLVVVITGVDSGDVLERWVFNVETDKSITASGGG----VEKSAKEIQKEIQAIIRQITASVSFLPLLDEPCTFDLLVYTDADTDVPRSWEESDPQYISNSTEVRLRSFTTKVHKVDAMVAYKTGDDD 208          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A2R5FZ78_9STRA (Mitotic spindle assembly checkpoint protein MAD2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZ78_9STRA)

HSP 1 Score: 205 bits (521), Expect = 5.470e-64
Identity = 102/182 (56.04%), Postives = 138/182 (75.82%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDE 552
            + S+LYQRG+Y P++F R +KY +  LVT DE L  YLE V++QL+ WL++  +Q+LVLVI G +S E LERW FNV  + + V   G+  +A +K +KEI  EIQ +IRQIT+SVTFLP+L+EPC+FDLLV+TD D +VP  W+ESD + I D+++VKLRSF+TKIHKVDT VSY+N  D+
Sbjct:   28 INSILYQRGIYPPETFKRVSKYGLALLVTEDEFLSNYLEQVLKQLESWLMEGTVQKLVLVITGVESKEVLERWVFNVEAD-KSVTATGNPLEAKQKPRKEIMNEIQAIIRQITASVTFLPLLNEPCTFDLLVHTDCDTEVPQTWEESDPRHIADATDVKLRSFTTKIHKVDTCVSYRNCVDD 208          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A8J5XKU7_DIALT (HORMA domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKU7_DIALT)

HSP 1 Score: 204 bits (520), Expect = 5.630e-64
Identity = 104/181 (57.46%), Postives = 134/181 (74.03%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPD 549
            V S+LYQRG+Y P++F + +KY +T LVTTD GL  YLE V+ QL  WL+D  +Q+LV+VI G +SG+TLERW F+V  ++ P   DG++ +A  + +KE+  EIQ +IRQIT+SVTFLP+LDE C+FDLLVYTD D  VP+ W+ESD K I  S EVKLRSF+TKIHKVD  VSY    D
Sbjct:   26 VNSILYQRGIYPPETFKKVSKYGLTMLVTTDAGLSDYLEQVLSQLSMWLIDRSVQKLVVVIAGQESGKTLERWVFDVRADKLP---DGASVEA--RPEKELTSEIQAIIRQITASVTFLPLLDEACTFDLLVYTDTDVNVPSAWEESDPKYIAKSEEVKLRSFTTKIHKVDAAVSYLAEDD 201          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A6U9WAU7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WAU7_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.400e-64
Identity = 104/198 (52.53%), Postives = 139/198 (70.20%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVL-----------------QDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPD 549
            + S+LYQRG+Y P++F RE+KYD+T L TTD+GL KYL  V+ Q++ WLL+ ++QRLV+V+ G DSGETLERW FNV  ++   +                  DG+  +  RK  KEI  EIQ +IRQIT+SVTFLP+L+EPCSFDLLVYT  DA VP+ W++SD   I +S EVKLRSF+T +HKVD++V+Y+   D
Sbjct:   27 INSILYQRGIYQPETFKRESKYDLTVLTTTDDGLLKYLSQVMAQMESWLLNGDVQRLVVVVSGVDSGETLERWQFNVALDDEAGVAGTDENRAPNPNVNDSNSDGNINKKNRKRLKEIHNEIQAIIRQITASVTFLPLLNEPCSFDLLVYTKKDAAVPSKWEDSDPCYIMNSQEVKLRSFTTSVHKVDSMVAYREAED 224          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A061QUQ8_9CHLO (Mitotic spindle assembly checkpoint protein MAD2 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUQ8_9CHLO)

HSP 1 Score: 202 bits (514), Expect = 6.310e-63
Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDEL 555
            V S+LYQRGVY P+SF  + KY +  ++T+DE L +YL NV++QL  WLL+ +LQRLVLV+    S E LERW FN+  ++  +     N     KSKKEI  EIQ +IRQIT+SVTFLP+LDE CSFDLL+YTD +A VP  W+ESD++ I +++EVKLRSFSTK+HK+D++V+YK   D L
Sbjct:   28 VNSILYQRGVYPPESFEGQKKYGLNMMITSDEKLTEYLNNVLKQLHEWLLNRQLQRLVLVVSSIQSKEVLERWAFNIETDKEVLSARDPNLVKREKSKKEITSEIQAIIRQITASVTFLPLLDESCSFDLLMYTDANADVPQQWEESDARFISNAAEVKLRSFSTKVHKIDSMVTYKMEDDNL 210          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A7S3PXY9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXY9_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.150e-62
Identity = 104/197 (52.79%), Postives = 142/197 (72.08%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVH---KEERPVLQDGS-------NTQAVR----------KSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYK 537
            + S+LYQRG+Y P++F RE+KY +T L TTDEGL KYL N++ Q++ WLLD ++QRLV+V+ G DSGETLERW FNV    KE++    +G+       NT+ +           KS ++I  EIQ +IRQIT+SVTFLP+L+EPCSFDLLVYT+  A VP  W++SD + I +S EVKLRSF+T +HKV+++V+YK
Sbjct:   27 INSILYQRGIYQPETFRRESKYGLTVLTTTDEGLLKYLNNIMSQMESWLLDGDVQRLVVVVTGVDSGETLERWQFNVSVDDKEKQAGKSNGNENDAAGINTKNINLPDGTKGKTGKSVRDIHNEIQAIIRQITASVTFLPLLNEPCSFDLLVYTNQTAVVPQKWEDSDPRYIMNSQEVKLRSFTTSVHKVESMVAYK 223          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A5A8DN77_CAFRO (HORMA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DN77_CAFRO)

HSP 1 Score: 200 bits (508), Expect = 4.970e-62
Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDE 552
            + S+L+QRG+Y P++F + AKY +  LV+TDEGLK YL +V+ Q+ GWLL+ ++Q+LV+VI G DSGETLERW FN+  ++  V    S+ + +    KEI++EI  +IRQIT+SV+FLP+L EPC+FDLLVYTD DA VP  W++SD + IKD  +++LRSF+T++HKV   VSY+   D+
Sbjct:   31 INSILFQRGIYPPETFDKVAKYGLPMLVSTDEGLKSYLSHVLTQISGWLLEGKVQKLVVVITGADSGETLERWVFNISPDKAAVTGGKSSDKPL----KEIQQEIAGIIRQITASVSFLPLLSEPCAFDLLVYTDPDAVVPRAWEDSDPRYIKDGEDMQLRSFTTRVHKVSAAVSYRRGDDD 208          
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Match: A0A7S0LS95_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS95_9EUKA)

HSP 1 Score: 201 bits (510), Expect = 5.770e-62
Identity = 100/180 (55.56%), Postives = 131/180 (72.78%), Query Frame = 1
Query:    7 VRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGWLLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSKKEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESDSKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRP 546
            + S+LYQRG+Y P+SF R +KY +  LVTT+ GL  YL++V+EQLK WL    +Q+LV+ + G  + ETLERW F V  +   V  +G+    V K +KE+  EIQ +IRQIT+SVTFLP+LDEPC+FDLLVYTD+D +VP  W+ESD K I +S EVKLRSF+TK+HKVD  V+YK  P
Sbjct:   62 INSILYQRGIYPPESFKRVSKYGLAMLVTTEPGLVTYLKSVLEQLKEWLAKGNVQKLVIAVTGQSTNETLERWVFEVQTDSAAVGANGT----VDKPEKEVMSEIQAIIRQITASVTFLPLLDEPCTFDLLVYTDDDVEVPKAWEESDPKYIANSDEVKLRSFTTKVHKVDASVTYKADP 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46418.11733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J694_9PHAE1.300e-10183.15HORMA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CIY9_9STRA3.240e-6556.48DNA-binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S1G3K4_9STRA1.310e-6456.04Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5FZ78_9STRA5.470e-6456.04Mitotic spindle assembly checkpoint protein MAD2A ... [more]
A0A8J5XKU7_DIALT5.630e-6457.46HORMA domain-containing protein n=1 Tax=Diacronema... [more]
A0A6U9WAU7_9STRA6.400e-6452.53Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A061QUQ8_9CHLO6.310e-6355.19Mitotic spindle assembly checkpoint protein MAD2 n... [more]
A0A7S3PXY9_9STRA1.150e-6252.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A5A8DN77_CAFRO4.970e-6252.20HORMA domain-containing protein n=3 Tax=Cafeteria ... [more]
A0A7S0LS95_9EUKA5.770e-6255.56Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46418contigH-elongata_contig46418:1049..2639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue8.7e-80
Seed eggNOG ortholog2880.D8LIH5
Preferred nameMAD2L1
KEGG koko:K02537
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,ko05166,map04110,map04111,map04113,map04114,map04914,map05166
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000922,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007346,GO:0008150,GO:0008152,GO:0008356,GO:0009056,GO:0009057,GO:0009405,GO:0009628,GO:0009790,GO:0009792,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010369,GO:0010498,GO:0010564,GO:0010605,GO:0010639,GO:0010941,GO:0010948,GO:0010965,GO:0010997,GO:0012505,GO:0015630,GO:0016043,GO:0017145,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030071,GO:0030154,GO:0030163,GO:0030587,GO:0031145,GO:0031156,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031570,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0032954,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033554,GO:0033597,GO:0034059,GO:0034399,GO:0034599,GO:0035556,GO:0035690,GO:0036293,GO:0040007,GO:0040020,GO:0042078,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043900,GO:0044087,GO:0044092,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044732,GO:0044774,GO:0044779,GO:0044877,GO:0045120,GO:0045595,GO:0045786,GO:0045787,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0046983,GO:0048133,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051233,GO:0051246,GO:0051248,GO:0051276,GO:0051301,GO:0051302,GO:0051312,GO:0051321,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051445,GO:0051447,GO:0051493,GO:0051494,GO:0051603,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060236,GO:0060255,GO:0060548,GO:0060631,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070507,GO:0070887,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0072686,GO:0080090,GO:0090068,GO:0090169,GO:0090224,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090702,GO:0098687,GO:0098722,GO:0098728,GO:0098813,GO:0099080,GO:0099081,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0099512,GO:0099513,GO:0110020,GO:0110029,GO:0140014,GO:1901261,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1901976,GO:1901978,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902115,GO:1902412,GO:1902413,GO:1903046,GO:1903047,GO:1903320,GO:1903321,GO:1903436,GO:1903437,GO:1903499,GO:1903500,GO:1903504,GO:1904666,GO:1904667,GO:1905132,GO:1905133,GO:1905318,GO:1905818,GO:1905819,GO:1990047,GO:1990492,GO:1990498,GO:2000241,GO:2000242,GO:2000431,GO:2000432,GO:2000816,GO:2001251
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG3285@1,KOG3285@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHORMA domain protein
Ec32 orthologEc-18_003640.1
Exons5
Model size558
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46418.11733.1prot_H-elongata_contig46418.11733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46418 1049..2639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.7859476-CDS-H-elongata_contig46418:1048..11931622930768.7859476-CDS-H-elongata_contig46418:1048..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1049..1193 +
1691679561.6822128-CDS-H-elongata_contig46418:1048..11931691679561.6822128-CDS-H-elongata_contig46418:1048..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1049..1193 +
1622930768.805555-CDS-H-elongata_contig46418:1341..14681622930768.805555-CDS-H-elongata_contig46418:1341..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1342..1468 +
1691679561.7072089-CDS-H-elongata_contig46418:1341..14681691679561.7072089-CDS-H-elongata_contig46418:1341..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1342..1468 +
1622930768.8214772-CDS-H-elongata_contig46418:1710..18551622930768.8214772-CDS-H-elongata_contig46418:1710..1855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1711..1855 +
1691679561.7194874-CDS-H-elongata_contig46418:1710..18551691679561.7194874-CDS-H-elongata_contig46418:1710..1855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 1711..1855 +
1622930768.836814-CDS-H-elongata_contig46418:2136..22231622930768.836814-CDS-H-elongata_contig46418:2136..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 2137..2223 +
1691679561.7292798-CDS-H-elongata_contig46418:2136..22231691679561.7292798-CDS-H-elongata_contig46418:2136..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 2137..2223 +
1622930768.858596-CDS-H-elongata_contig46418:2585..26391622930768.858596-CDS-H-elongata_contig46418:2585..2639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 2586..2639 +
1691679561.736769-CDS-H-elongata_contig46418:2585..26391691679561.736769-CDS-H-elongata_contig46418:2585..2639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46418 2586..2639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46418.11733.1

>prot_H-elongata_contig46418.11733.1 ID=prot_H-elongata_contig46418.11733.1|Name=mRNA_H-elongata_contig46418.11733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MGVRSVLYQRGVYHPDSFAREAKYDITTLVTTDEGLKKYLENVIEQLKGW
LLDSELQRLVLVIVGTDSGETLERWTFNVHKEERPVLQDGSNTQAVRKSK
KEIKKEIQNVIRQITSSVTFLPMLDEPCSFDLLVYTDNDAKVPTGWDESD
SKCIKDSSEVKLRSFSTKIHKVDTVVSYKNRPDEL*
back to top

mRNA from alignment at H-elongata_contig46418:1049..2639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46418.11733.1 ID=mRNA_H-elongata_contig46418.11733.1|Name=mRNA_H-elongata_contig46418.11733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1591bp|location=Sequence derived from alignment at H-elongata_contig46418:1049..2639+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGTGCGCAGCGTCTTGTACCAGCGAGGCGTTTACCACCCGGACAG TTTCGCCCGTGAGGCCAAGTATGACATTACGACTCTGGTGACGACGGACG AAGGGCTGAAAAAGTACCTCGAGAACGTCATCGAGCAGCTTAAAGGTGGG TCCGTCGGAGAGCCCATGCACCGATCGCAGTCTGTCGTGCTCGGCCTTGG CGCAAAAAGTCCATCCCTCGCTCCTGTTGTGTTCGTGGCTGATCTTCTTG TTTTTTGCTTACGGTACCTTTCACGCTTGATCGCCTTCGTCAGGATGGTT GTTGGACAGCGAGCTCCAGCGCTTGGTCCTGGTTATCGTCGGAACAGACT CGGGCGAGACCCTCGAGAGGTGGACGTTCAACGTCCATAAGGAGGAGCGA CCGGTTCTCCAAGATGGCAGGTACGGTAAAGCGAACCATGGCAAGTTTGC TTATTTCTTGAATCACCAAAGGCCGGGACGAGGTCGTTGCGTTGCTGAAA AGAATCGTTGAATGCAACGAGAGAGAACGTTACGCGTTTGAGACCCGAGG AACACGCTGCAAATTTGGTCTTCCTAAGGCACCGATGTTATCAAATTTAT ATTCGTTCCCTGGTCCCATTATCTCCTTGTGAACGTCAAAATCCTTTGGG ACGGGTTCTCAGCAACACCCAGGCTGTGCGAAAGTCGAAGAAGGAGATCA AGAAAGAAATCCAGAACGTAATTCGGCAGATCACGTCAAGCGTGACGTTT TTGCCAATGCTTGACGAGCCGTGCTCGTTCGACCTGCTTGTTTACACCGA CAACGACGTGAGTAATCGCATCTTCTGCCATCCGCGCGCGATAAAACGCC ACTAGGCAGTGTGTAATGTCCGTGTCTCGTCGCGTCAGACTATTTTCCTG TCGAAGACGATGTCCCACCTTGATGTTGGTGCAAAGGGATTTCTCTCACG CTTTAAATCGATTACTACATTGATGTGATGCCTGATTAGTCTGGGAGGAA GTCACGTGTCGACGCTTGTTTTTTTACACCATTTGTCGACTCAAGTTTGT CGTCTAATCGAGAATATTTTGGCGCTGTGCGTTATTAGGCTAAAGTACCA ACAGGATGGGATGAATCGGACTCGAAGTGCATCAAGGATTCTTCTGAAGT GAAACTCCGTTCATTTTCCACCAAGGTGCGGGTAGTGCATCATATCGAAT CTCAGTGTCCCTTGTGTGTGTCCCCATTTTTAGTTTAAAATAATTTTACG GGAAACGTCGACTGTCAGGATTGCTCGCAAATTGTACTTATCTTCAGCTT GATTTATCAAGAGTGTGACTCGAAGTTTGATCACCGCATAAGGAGGCATG CGTGAGAGACTGTAAGAAGTACTGCTTTCAATGCGTCGGCGTTCCAAAGA CGGGAATCAGGGATGGTTTCAGCATAAAAATCTCCAAAGCTTTCCCTGCT AAGCTTCCCTCAACCCCGATGGAACTCGATATGTTTTTTTTCATGCCGAT CTAACTAGTTATTATCTTACTCCCGTTCTCGTGGCAGATTCACAAGGTCG ACACGGTCGTTTCCTACAAGAACAGGCCCGACGAACTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig46418:1049..2639+

>mRNA_H-elongata_contig46418.11733.1 ID=mRNA_H-elongata_contig46418.11733.1|Name=mRNA_H-elongata_contig46418.11733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig46418:1049..2639+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGTGCGCAGCGTCTTGTACCAGCGAGGCGTTTACCACCCGGACAG
TTTCGCCCGTGAGGCCAAGTATGACATTACGACTCTGGTGACGACGGACG
AAGGGCTGAAAAAGTACCTCGAGAACGTCATCGAGCAGCTTAAAGATGGG
CGTGCGCAGCGTCTTGTACCAGCGAGGCGTTTACCACCCGGACAGTTTCG
CCCGTGAGGCCAAGTATGACATTACGACTCTGGTGACGACGGACGAAGGG
CTGAAAAAGTACCTCGAGAACGTCATCGAGCAGCTTAAAGGATGGTTGTT
GGACAGCGAGCTCCAGCGCTTGGTCCTGGTTATCGTCGGAACAGACTCGG
GCGAGACCCTCGAGAGGTGGACGTTCAACGTCCATAAGGAGGAGCGACCG
GTTCTCCAAGATGGCAGGATGGTTGTTGGACAGCGAGCTCCAGCGCTTGG
TCCTGGTTATCGTCGGAACAGACTCGGGCGAGACCCTCGAGAGGTGGACG
TTCAACGTCCATAAGGAGGAGCGACCGGTTCTCCAAGATGGCAGCAACAC
CCAGGCTGTGCGAAAGTCGAAGAAGGAGATCAAGAAAGAAATCCAGAACG
TAATTCGGCAGATCACGTCAAGCGTGACGTTTTTGCCAATGCTTGACGAG
CCGTGCTCGTTCGACCTGCTTGTTTACACCGACAACGACCAACACCCAGG
CTGTGCGAAAGTCGAAGAAGGAGATCAAGAAAGAAATCCAGAACGTAATT
CGGCAGATCACGTCAAGCGTGACGTTTTTGCCAATGCTTGACGAGCCGTG
CTCGTTCGACCTGCTTGTTTACACCGACAACGACGCTAAAGTACCAACAG
GATGGGATGAATCGGACTCGAAGTGCATCAAGGATTCTTCTGAAGTGAAA
CTCCGTTCATTTTCCACCAAGGCTAAAGTACCAACAGGATGGGATGAATC
GGACTCGAAGTGCATCAAGGATTCTTCTGAAGTGAAACTCCGTTCATTTT
CCACCAAGATTCACAAGGTCGACACGGTCGTTTCCTACAAGAACAGGCCC
GACGAACTGTAAATTCACAAGGTCGACACGGTCGTTTCCTACAAGAACAG
GCCCGACGAACTGTAA
back to top