mRNA_H-elongata_contig206894.5925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206894.5925.1
Unique NamemRNA_H-elongata_contig206894.5925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: D8LJU0_ECTSI (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 8.240e-20
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 GKRVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGM-SAVQQVEDAFGIPVVSIATLAHLME 246
            GKRVL+VDDVIT GTAIR++  ILR+  A PAGVV+A DRQE+TGAES      IG  SAVQQVE+  G+PVVS+  ++HL E
Sbjct:  420 GKRVLVVDDVITAGTAIREAFGILRKEGATPAGVVIALDRQEKTGAES-----VIGTTSAVQQVEEECGVPVVSVVGMSHLTE 497          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A0G4G8I2_VITBC (Orotate phosphoribosyltransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G8I2_VITBC)

HSP 1 Score: 85.1 bits (209), Expect = 2.440e-18
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 GKRVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIG---MSAVQQVEDAFGIPVVSIATLAHLM 243
            G RVL+VDDV+T GTA+R+SM+I++ A    AGVV+A DRQER  AE++GE+   G    SAVQ+V   +G+PV+SI TL HL+
Sbjct:  131 GMRVLIVDDVMTAGTAVRESMDIIKRAGCHLAGVVIALDRQERGKAEAEGEAERGGAAPQSAVQEVAGQYGVPVLSIITLQHLI 214          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A835Z0K1_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.830e-18
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 GKRVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHL 240
            GKRVL+VDDVIT GTAIR++M++L  A AVPAGVV+A DR E+ G           +SAVQQVE  FGIPVVS+  L H+
Sbjct:  421 GKRVLIVDDVITAGTAIREAMDMLTAAGAVPAGVVIALDRMEKGGGSE--------LSAVQQVEKEFGIPVVSVVCLTHI 492          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A4Q3Y1D1_9BACT (Orotate phosphoribosyltransferase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3Y1D1_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-17
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLME 246
            RVL++DDVIT GTAIR+S+EI+R A A PAG+ +A DR+ER    + GE  T+  SAVQ+V+  FGIP VSI +L+ L+E
Sbjct:   60 RVLIIDDVITAGTAIRESIEIIRAAGAQPAGIALALDREERGRDPATGE--TLAESAVQEVQRLFGIPCVSILSLSALIE 137          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A258N308_9GAMM (Orotate phosphoribosyltransferase n=5 Tax=unclassified Thiotrichales TaxID=939858 RepID=A0A258N308_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 2.790e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLM 243
            ++L+VDDVIT GTAIR+S+EI++ A A PAGVV+A DR E+   E          S+VQ+VED FGIPV+ I T+AHL+
Sbjct:  119 KILIVDDVITAGTAIRESIEIIQAAGATPAGVVIALDRMEKGTGEK---------SSVQEVEDRFGIPVIPIVTMAHLI 188          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A522Q927_9BURK (Orotate phosphoribosyltransferase (Fragment) n=1 Tax=Candidimonas sp. TaxID=1912597 RepID=A0A522Q927_9BURK)

HSP 1 Score: 80.9 bits (198), Expect = 5.020e-17
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLM 243
            RV+++DDVIT GT++R+S+ ++R+A A PA V++A DR ER G  +DGE S +  SAVQ V  A+GIPVVSIATL  +M
Sbjct:  125 RVVIIDDVITAGTSVRESVGLIRQAGATPAAVLIALDRMERAG--TDGELSPL--SAVQDVSRAYGIPVVSIATLDDIM 199          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: D3RRZ7_ALLVD (Orotate phosphoribosyltransferase n=4 Tax=Allochromatium TaxID=85072 RepID=D3RRZ7_ALLVD)

HSP 1 Score: 80.9 bits (198), Expect = 5.520e-17
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLM 243
            R+L++DDVIT GT++R+S+EI+R A A PAGVV+A DRQER      GE S     AVQ+VED FG+PV S+ T+A L+
Sbjct:  119 RILIIDDVITAGTSVRESVEIIRAAGATPAGVVIALDRQER----GQGERS-----AVQEVEDQFGLPVQSLLTMADLI 188          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A5Q0EHF8_9GAMM (Orotate phosphoribosyltransferase n=1 Tax=gamma proteobacterium SS-5 TaxID=947516 RepID=A0A5Q0EHF8_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 5.620e-17
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLME 246
            RVL++DDVIT GTAIR+SM+I++  +A PAGVV+A DRQER      G+ S     A+Q+VE  FGIPV+SI TL  L+E
Sbjct:  119 RVLIIDDVITAGTAIRESMDIIQAQQARPAGVVIALDRQER----GQGQRS-----AIQEVEQEFGIPVISIVTLDQLVE 189          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A7C4I4J8_9PROT (Orotate phosphoribosyltransferase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4I4J8_9PROT)

HSP 1 Score: 80.9 bits (198), Expect = 6.860e-17
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLM 243
            RV++VDDVIT GT++R+S+E++R A A PAGV++A DR ER G  S+G  S    SAVQ+VE A+G+PVV+IATL  L+
Sbjct:  122 RVVIVDDVITAGTSVRESVELIRAAGATPAGVLIALDRMERAG--SNGALSP--RSAVQEVEAAYGMPVVAIATLDDLL 196          
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Match: A0A7C1XRW7_9GAMM (Orotate phosphoribosyltransferase n=2 Tax=root TaxID=1 RepID=A0A7C1XRW7_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 7.760e-17
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    7 RVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDGESSTIGMSAVQQVEDAFGIPVVSIATLAHLM 243
            +VL++DDVIT GTAIR+SM+I+ +A A PAGV++A DRQE+   E         +SA+Q+VE  + IPV+SI TL HL+
Sbjct:  119 KVLIIDDVITAGTAIRESMQIIEQANATPAGVIIALDRQEKGTGE---------LSAIQEVEQQYNIPVLSIITLEHLI 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206894.5925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJU0_ECTSI8.240e-2062.65Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectoc... [more]
A0A0G4G8I2_VITBC2.440e-1854.76Orotate phosphoribosyltransferase n=2 Tax=Vitrella... [more]
A0A835Z0K1_9STRA4.830e-1858.75Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribo... [more]
A0A4Q3Y1D1_9BACT1.610e-1756.25Orotate phosphoribosyltransferase (Fragment) n=1 T... [more]
A0A258N308_9GAMM2.790e-1754.43Orotate phosphoribosyltransferase n=5 Tax=unclassi... [more]
A0A522Q927_9BURK5.020e-1755.70Orotate phosphoribosyltransferase (Fragment) n=1 T... [more]
D3RRZ7_ALLVD5.520e-1755.70Orotate phosphoribosyltransferase n=4 Tax=Allochro... [more]
A0A5Q0EHF8_9GAMM5.620e-1756.25Orotate phosphoribosyltransferase n=1 Tax=gamma pr... [more]
A0A7C4I4J8_9PROT6.860e-1756.96Orotate phosphoribosyltransferase n=2 Tax=Betaprot... [more]
A0A7C1XRW7_9GAMM7.760e-1751.90Orotate phosphoribosyltransferase n=2 Tax=root Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206894contigH-elongata_contig206894:29..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LJU0
Preferred nameURA5
KEGG rclassRC00063,RC00409,RC00611
KEGG koko:K00762,ko:K01591,ko:K13421,ko:K15334
KEGG ReactionR00965,R01870,R08231
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00051
GOsGO:0003674,GO:0003824,GO:0004588,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019856,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' UMP biosynthetic process
EggNOG OGsCOG0461@1,KOG1377@2759
Ec32 ortholog descriptionorotidine-5'-phosphate decarboxylase
Ec32 orthologEc-23_000110.1
EC2.1.1.202,2.4.2.10,4.1.1.23
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.550153-CDS-H-elongata_contig206894:28..1511622930156.550153-CDS-H-elongata_contig206894:28..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206894 29..151 +
1691679302.741792-CDS-H-elongata_contig206894:28..1511691679302.741792-CDS-H-elongata_contig206894:28..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206894 29..151 +
1622930156.5641744-CDS-H-elongata_contig206894:574..6971622930156.5641744-CDS-H-elongata_contig206894:574..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206894 575..697 +
1691679302.7580976-CDS-H-elongata_contig206894:574..6971691679302.7580976-CDS-H-elongata_contig206894:574..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206894 575..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206894.5925.1prot_H-elongata_contig206894.5925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206894 29..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206894.5925.1

>prot_H-elongata_contig206894.5925.1 ID=prot_H-elongata_contig206894.5925.1|Name=mRNA_H-elongata_contig206894.5925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
GKRVLLVDDVITGGTAIRQSMEILREAEAVPAGVVVAFDRQERTGAESDG
ESSTIGMSAVQQVEDAFGIPVVSIATLAHLME
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mRNA from alignment at H-elongata_contig206894:29..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206894.5925.1 ID=mRNA_H-elongata_contig206894.5925.1|Name=mRNA_H-elongata_contig206894.5925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at H-elongata_contig206894:29..697+ (Himanthalia elongata Himel1 dioecious)
GGGAAGCGGGTGCTTTTGGTGGACGATGTAATCACTGGCGGGACTGCCAT TCGCCAGTCGATGGAGATACTTCGAGAGGCGGAAGCTGTACCGGCTGGCG TCGTGGTCGCGTTCGACCGACAGGTCCCCGGGGTTTTCGCCCGTTTCGCG ATGCTCAAGTCCTTAGTGGTGTTTCCGAGGGCATCGTGCTTTGTAGAAGT AGTTTAATTGTTTCATGATTTAACGGTATCTCCTCACGAACCACAAGTTT TGTAGGATGAAATCGATCAACCGGAAGATGGAATCGATCCGCCATTATGG TTCCCTCTAGCATAGTGTCACCTGTCGCGAAGCTGTCTCTTCTCGCATGT GCCGTTGCTCTATCGCTTCACCATGCCTCCGCTCGAGGTTGACGAGTGCC GAGTGCGCAAGGAGTCAATATCAGTTTTCCCGGCTAGTCTCTTTCACTCT TTCTTTCGGAACGCGTACGAATCACTCAAACGTCGTACTGTATGCTGTCT TCTGTTTTTTAAGAAATCGTCCAACGCAATCAACGACTTGGCGTAGGAAC GGACGGGCGCGGAATCGGATGGGGAATCATCGACGATTGGCATGTCAGCC GTCCAACAAGTTGAAGATGCTTTCGGAATTCCCGTCGTTAGCATCGCCAC CCTTGCTCACCTCATGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig206894:29..697+

>mRNA_H-elongata_contig206894.5925.1 ID=mRNA_H-elongata_contig206894.5925.1|Name=mRNA_H-elongata_contig206894.5925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig206894:29..697+ (Himanthalia elongata Himel1 dioecious)
GGGAAGCGGGTGCTTTTGGTGGACGATGTAATCACTGGCGGGACTGCCAT
TCGCCAGTCGATGGAGATACTTCGAGAGGCGGAAGCTGTACCGGCTGGCG
TCGTGGTCGCGTTCGACCGACAGGGGAAGCGGGTGCTTTTGGTGGACGAT
GTAATCACTGGCGGGACTGCCATTCGCCAGTCGATGGAGATACTTCGAGA
GGCGGAAGCTGTACCGGCTGGCGTCGTGGTCGCGTTCGACCGACAGGAAC
GGACGGGCGCGGAATCGGATGGGGAATCATCGACGATTGGCATGTCAGCC
GTCCAACAAGTTGAAGATGCTTTCGGAATTCCCGTCGTTAGCATCGCCAC
CCTTGCTCACCTCATGGAAGAACGGACGGGCGCGGAATCGGATGGGGAAT
CATCGACGATTGGCATGTCAGCCGTCCAACAAGTTGAAGATGCTTTCGGA
ATTCCCGTCGTTAGCATCGCCACCCTTGCTCACCTCATGGAA
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