mRNA_H-elongata_contig20673.5917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20673.5917.1
Unique NamemRNA_H-elongata_contig20673.5917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20673.5917.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.640e-35
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 RTATKTIPCLKGAKSNVNKHLRDVHELVGSKGATRTKNAQNRQGNIRAAMGASRTFDVGERRVKGLQAAKLVVEKLLPFTFFSTGDTFTE 270
            RT+TKT PC KG+KSNVNKH R+VH+LVG+KGA R +NAQN QGNIRAAMGAS+TF VG +RVK LQAAKLVVEK+LPF+FFS+G TF E
Sbjct:  118 RTSTKTTPCPKGSKSNVNKHFREVHQLVGAKGAVRMENAQNHQGNIRAAMGASKTFGVGGKRVKELQAAKLVVEKMLPFSFFSSGGTFKE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20673.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE2.640e-3575.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20673contigH-elongata_contig20673:2961..4071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.8337433-CDS-H-elongata_contig20673:2960..31451622930155.8337433-CDS-H-elongata_contig20673:2960..3145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20673 2961..3145 +
1691679302.4439971-CDS-H-elongata_contig20673:2960..31451691679302.4439971-CDS-H-elongata_contig20673:2960..3145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20673 2961..3145 +
1622930155.8523207-CDS-H-elongata_contig20673:3985..40701622930155.8523207-CDS-H-elongata_contig20673:3985..4070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20673 3986..4070 +
1691679302.4539125-CDS-H-elongata_contig20673:3985..40701691679302.4539125-CDS-H-elongata_contig20673:3985..4070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20673 3986..4070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20673.5917.1prot_H-elongata_contig20673.5917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20673 2961..4070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20673.5917.1

>prot_H-elongata_contig20673.5917.1 ID=prot_H-elongata_contig20673.5917.1|Name=mRNA_H-elongata_contig20673.5917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
RTATKTIPCLKGAKSNVNKHLRDVHELVGSKGATRTKNAQNRQGNIRAAM
GASRTFDVGERRVKGLQAAKLVVEKLLPFTFFSTGDTFTE
back to top

mRNA from alignment at H-elongata_contig20673:2961..4071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20673.5917.1 ID=mRNA_H-elongata_contig20673.5917.1|Name=mRNA_H-elongata_contig20673.5917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig20673:2961..4071+ (Himanthalia elongata Himel1 dioecious)
CGGACAGCCACGAAGACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGT
CAACAAACACCTCCGCGACGTTCACGAGTTGGTGGGCTCCAAGGGGGCGA
CGAGAACCAAGAACGCGCAGAATAGACAGGGAAACATCAGAGCAGCTATG
GGAGCGAGCCGGACATTCGACGTTGGCGAAAGGAGGTGATTTTTATTTTT
TGTCTTTTTGAGTGAGAGCGTTATTTTTTAGAGAGCGACACCGAGATGGT
TGTGTGGGTTCTGTTTTGTTTTGTTTTTCGTCCCATCTCTGGCGCCGCCT
GCTTACTCCTCTTCGGTGCACACTACACGTTGCGGCGTATGTACACGTAC
ACTTTTCAGCGTACTGTTCACACAGTAGGGGGTACCCACGCCGGGGGGTT
TTCTTCTTTTTATCTTCTTTTGTCCCCACCACCTACCTCCTGCGGTGCCT
GCCTGAGATATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGCG
ACAGTTAAGTCGATGTTGTTGTGATGTAAATGCAAACAAGAGACTGCTGT
ACCTATCTTGAATCTTTATTTTTTTCTTTGCTGAAATACCTAGTAGACCC
GGTGCAAAAGAAGTACTAATGTGTGTGGTGGGTTGTAGAGAACACACGAA
ATTACATAGTAATAGTCTAGTGTAGAATATAAATCTGGTAGAGGACCGGT
GCACAAACAAGAATATCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTTTTTGTATCGTGCATACTATGCACCATCCCCCAC
CCGAATTGGCTGATTTTTCAGGTTGCGCGCCAGCGCACAAGGAAAGTCCT
AACCAAACGCGTGCGTATATTTTTATTTATTATATTCTCGAGGAAGGAAG
CAGAGCTAGCCTCGAGCCTTAGCCTTTGATAGATTGTGGCTCCTCTCATG
TCCGCCCTCTGACCTCTCCCTCCCCTCGGTGTGGGTGTGTTCGCCTTTTC
GATGCCTACTCTCTTTGTTCTCCAGGGTTAAGGGGCTACAGGCGGCGAAG
CTTGTCGTGGAGAAGCTGCTGCCGTTTACCTTCTTCTCAACTGGGGACAC
GTTCACGGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20673:2961..4071+

>mRNA_H-elongata_contig20673.5917.1 ID=mRNA_H-elongata_contig20673.5917.1|Name=mRNA_H-elongata_contig20673.5917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig20673:2961..4071+ (Himanthalia elongata Himel1 dioecious)
CGGACAGCCACGAAGACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGT
CAACAAACACCTCCGCGACGTTCACGAGTTGGTGGGCTCCAAGGGGGCGA
CGAGAACCAAGAACGCGCAGAATAGACAGGGAAACATCAGAGCAGCTATG
GGAGCGAGCCGGACATTCGACGTTGGCGAAAGGAGCGGACAGCCACGAAG
ACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGTCAACAAACACCTCCG
CGACGTTCACGAGTTGGTGGGCTCCAAGGGGGCGACGAGAACCAAGAACG
CGCAGAATAGACAGGGAAACATCAGAGCAGCTATGGGAGCGAGCCGGACA
TTCGACGTTGGCGAAAGGAGGGTTAAGGGGCTACAGGCGGCGAAGCTTGT
CGTGGAGAAGCTGCTGCCGTTTACCTTCTTCTCAACTGGGGACACGTTCA
CGGAGGGTTAAGGGGCTACAGGCGGCGAAGCTTGTCGTGGAGAAGCTGCT
GCCGTTTACCTTCTTCTCAACTGGGGACACGTTCACGGAG
back to top