mRNA_H-elongata_contig20671.5915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20671.5915.1
Unique NamemRNA_H-elongata_contig20671.5915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: D8LJE9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 8.550e-33
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVRR 186
            GEDKRSQIDPIQR G HCIVATPGRISDLLH+HK+HFDLCKYICLDEGDRMLDMGFDEEV++
Sbjct:  336 GEDKRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEVQK 397
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A7S3XUS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS9_HETAK)

HSP 1 Score: 105 bits (263), Expect = 3.700e-25
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVR 183
            GED+R+Q+DP++R G HCIVATPGR+ DLL+S +I  DLCKYICLDEGDRMLD+GFDEEV+
Sbjct:  312 GEDRRAQVDPVKREGVHCIVATPGRLKDLLNSKQILLDLCKYICLDEGDRMLDLGFDEEVQ 372
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A836CIR5_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.090e-24
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVR 183
            GEDKR+Q  PI + G HCIVATPGR+SDLL+S KI+ D+C+YICLDEGDRMLD+GFDEEVR
Sbjct:  251 GEDKRTQFMPILQRGVHCIVATPGRLSDLLNSGKINLDVCRYICLDEGDRMLDLGFDEEVR 311
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A7R9UA62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA62_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.580e-22
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVR 183
            GE KR QI  +QR G HCIVATPGR+ DLL++ KI+ D+CKY+ LDEGDRMLD+GFDEEV+
Sbjct:  304 GESKRDQITAVQRDGVHCIVATPGRLKDLLNARKINLDVCKYLVLDEGDRMLDLGFDEEVQ 364
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A7S2AYX9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AYX9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.530e-22
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   10 KRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVR 183
            KR QI+P+QR G H +VATPGR+ DLL++ K + DLC+Y+CLDEGDRMLD+GFDEEV+
Sbjct:    1 KREQIEPVQRHGVHAVVATPGRLKDLLNTKKFNLDLCRYLCLDEGDRMLDLGFDEEVQ 58
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: W4FU30_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU30_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.260e-21
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEV 180
            G+DKR Q+D I + G H +VATPGR+ D L S K+H DLC+YICLDEGDRMLD+GFDEEV
Sbjct:  295 GQDKREQLDMIFKRGVHIVVATPGRLKDFLQSKKMHLDLCQYICLDEGDRMLDLGFDEEV 354
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A397DCK7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DCK7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.440e-21
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEV 180
            G+DKR Q+D I + G H +VATPGR+ D L S K+H DLC+YICLDEGDRMLD+GFDEEV
Sbjct:  303 GQDKREQLDMIFKRGVHIVVATPGRLKDFLQSKKMHLDLCQYICLDEGDRMLDLGFDEEV 362
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BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: W4FS48_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS48_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-21
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEV 180
            G+DKR Q+D I + G H +VATPGR+ D L S K+H DLC+YICLDEGDRMLD+GFDEEV
Sbjct:  295 GQDKREQLDMIFKRGVHIVVATPGRLKDFLQSKKMHLDLCQYICLDEGDRMLDLGFDEEV 354
[Close]
BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A024TCJ3_9STRA (RNA helicase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCJ3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.510e-20
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEV 180
            G+DKR Q+D I + G H +VATPGR+ D L S K++ DLC+YICLDEGDRMLD+GFDEEV
Sbjct:  292 GQDKREQLDMIFKRGVHIVVATPGRLKDFLQSKKMNLDLCQYICLDEGDRMLDLGFDEEV 351
[Close]
BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Match: A0A7S1XQX1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQX1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.510e-20
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDRMLDMGFDEEVR 183
            GE KR QI  ++R G H +VATPGR+ DLL++ K++ +LCKY+CLDEGDRMLD+GFDEEV+
Sbjct:  314 GESKRDQIMQVEREGVHIVVATPGRLKDLLNARKMNLNLCKYLCLDEGDRMLDLGFDEEVQ 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20671.5915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJE9_ECTSI8.550e-3390.32DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XUS9_HETAK3.700e-2573.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CIR5_9STRA3.090e-2475.41RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7R9UA62_9STRA6.580e-2268.85Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2AYX9_9STRA7.530e-2267.24Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
W4FU30_9STRA1.260e-2168.33Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397DCK7_9STRA1.440e-2168.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4FS48_9STRA1.710e-2168.33Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A024TCJ3_9STRA1.510e-2066.67RNA helicase n=2 Tax=Aphanomyces invadans TaxID=15... [more]
A0A7S1XQX1_9STRA1.510e-2063.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20671contigH-elongata_contig20671:377..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D8LJE9
Preferred nameDDX41
KEGG koko:K13116
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001817,GO:0001819,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008283,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012501,GO:0012505,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032502,GO:0032991,GO:0033036,GO:0034097,GO:0034641,GO:0035456,GO:0035458,GO:0035770,GO:0036464,GO:0042221,GO:0042623,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071013,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsKOG0341@1,KOG0341@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.6447966-CDS-H-elongata_contig20671:376..4401622930155.6447966-CDS-H-elongata_contig20671:376..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 377..440 -
1691679302.3623106-CDS-H-elongata_contig20671:376..4401691679302.3623106-CDS-H-elongata_contig20671:376..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 377..440 -
1622930155.6592908-CDS-H-elongata_contig20671:795..9171622930155.6592908-CDS-H-elongata_contig20671:795..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 796..917 -
1691679302.379642-CDS-H-elongata_contig20671:795..9171691679302.379642-CDS-H-elongata_contig20671:795..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 796..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20671.5915.1prot_H-elongata_contig20671.5915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20671 377..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20671.5915.1

>prot_H-elongata_contig20671.5915.1 ID=prot_H-elongata_contig20671.5915.1|Name=mRNA_H-elongata_contig20671.5915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
GEDKRSQIDPIQRVGCHCIVATPGRISDLLHSHKIHFDLCKYICLDEGDR
MLDMGFDEEVRR
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mRNA from alignment at H-elongata_contig20671:377..917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20671.5915.1 ID=mRNA_H-elongata_contig20671.5915.1|Name=mRNA_H-elongata_contig20671.5915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=541bp|location=Sequence derived from alignment at H-elongata_contig20671:377..917- (Himanthalia elongata Himel1 dioecious)
GGTGAAGACAAGCGCAGCCAGATCGATCCCATCCAGAGGGTGGGGTGCCA
CTGCATCGTGGCCACGCCCGGACGCATCAGCGACCTTTTGCACTCGCACA
AGATCCACTTCGACCTTTGCAAGTGGGTTTTGGTTTCTGTTCGGGCGGCC
ACGGAAAACAGATTATTTTCCCTTCCCTTGTTTGCCTTTCTTGTCTCCGA
TGCCTCTTTGTCATTGAGTTGAGAGTAATGCTTCGAGCATTTCGAGCTAC
TTCTTGTAGCGTCGCTGTGGTACTCCACCCCCCTCCCCAACGTTTTGGGG
TGGTGTGAAAGAGGGATTTTCCTGGTTGCCGAAAGGTTAAATCGACGTAC
GCAGGGTTATCGTGATAGACGCGCGGTCCTTTAGAGTTTGTATGCGGAAT
AAACGTGTTTCTACGATCGATGGCTCAATCAATATAACTCATTGTCTAAT
CTTGTGTGATTTTGTTTGTATGAGCAGGTATATATGCCTGGACGAAGGGG
ACCGAATGCTGGATATGGGTTTCGACGAGGAGGTGAGGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig20671:377..917-

>mRNA_H-elongata_contig20671.5915.1 ID=mRNA_H-elongata_contig20671.5915.1|Name=mRNA_H-elongata_contig20671.5915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig20671:377..917- (Himanthalia elongata Himel1 dioecious)
GGTGAAGACAAGCGCAGCCAGATCGATCCCATCCAGAGGGTGGGGTGCCA
CTGCATCGTGGCCACGCCCGGACGCATCAGCGACCTTTTGCACTCGCACA
AGATCCACTTCGACCTTTGCAAGGTGAAGACAAGCGCAGCCAGATCGATC
CCATCCAGAGGGTGGGGTGCCACTGCATCGTGGCCACGCCCGGACGCATC
AGCGACCTTTTGCACTCGCACAAGATCCACTTCGACCTTTGCAAGTATAT
ATGCCTGGACGAAGGGGACCGAATGCTGGATATGGGTTTCGACGAGGAGG
TGAGGCGTGTATATATGCCTGGACGAAGGGGACCGAATGCTGGATATGGG
TTTCGACGAGGAGGTGAGGCGT
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