mRNA_H-elongata_contig20669.5913.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: D8LJ31_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ31_ECTSI) HSP 1 Score: 119 bits (299), Expect = 9.180e-34 Identity = 54/75 (72.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query: 22 LPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
+PA FESHGMDLRWQGWV+S YG++SF + PMLGRVSDS+GRV MLK+S VG+++GALGSL+ATG+W+FIA+R V
Sbjct: 1 MPAAFESHGMDLRWQGWVASTYGLISFFVGPMLGRVSDSMGRVAMLKMSCVGNIIGALGSLYATGRWTFIASRKV 75
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE) HSP 1 Score: 129 bits (323), Expect = 6.010e-33 Identity = 58/79 (73.42%), Postives = 73/79 (92.41%), Query Frame = 1
Query: 10 QIPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
QIPS+PA FESHGMDLRWQGWV+S YG++SF + PMLGRVSDS+GRV MLK+S VG+M+GALGSL+ATG+W+FIA+R++
Sbjct: 81 QIPSMPAAFESHGMDLRWQGWVASTYGIISFFVGPMLGRVSDSMGRVAMLKMSCVGNMIGALGSLYATGRWTFIASRTL 159
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A835Z3Q7_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.170e-17 Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAAR 240
+PS +F S+GMDL QG+V S + +F+MSP+LGR SDS GRV +LK+SA GS+LGA G+L A KW+FI AR
Sbjct: 54 LPSFRDLFASYGMDLVQQGYVGSASALSAFVMSPILGRASDSYGRVTLLKLSAAGSILGAAGTLLAPNKWAFILAR 129
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A316FIT4_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=1 Tax=Actinoplanes xinjiangensis TaxID=512350 RepID=A0A316FIT4_9ACTN) HSP 1 Score: 50.4 bits (119), Expect = 2.690e-5 Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 13 IPSLPAVFESHGMD----LRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIA 234
+P +PA+ + D + W G + S YGV+ F++SP+LGR+SD GR +L S + + L A+G W+ +A
Sbjct: 19 VPIMPALMTAVTADPATAVLWSGVLGSTYGVLQFVVSPLLGRISDRYGRRPVLLASLICLGVDWLAHASASGPWALLA 96
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A2T0K2N5_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=1 Tax=Actinoplanes italicus TaxID=113567 RepID=A0A2T0K2N5_9ACTN) HSP 1 Score: 49.7 bits (117), Expect = 5.020e-5 Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 13 IPSLPAVFESHGMD----LRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFI 231
+P LPA+ + D + W G + S YG++ F++SP+LGRVSD GR +L VS + L A+G W+ +
Sbjct: 19 VPILPALMTAVTTDPAAAVLWSGVLGSTYGLLQFVLSPLLGRVSDRYGRRPVLLVSLTCLGVDWLAHAAASGPWTLL 95
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: W7TQ05_9STRA (Major facilitator superfamily mfs_1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ05_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 5.070e-5 Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSM 183
+P+ P + ++ G+ L+ +G + S++ ++ FL SP+LGR SD +GR ML+VSAV S+
Sbjct: 30 LPAYPDLTKALGISLQTRGLMVSLFSLLQFLSSPILGRGSDVLGRSFMLRVSAVASL 86
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A7W5ASF0_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A7W5ASF0_9ACTN) HSP 1 Score: 49.3 bits (116), Expect = 6.860e-5 Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 13 IPSLPAVFESHGMDLR----WQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHA 210
+P LPA+ + D+ W G + SVYG++ F++SP+LGR+SD GR +L VS + LGA +HA
Sbjct: 25 VPILPALMTAVAADVTAAAFWSGLLGSVYGLLQFVLSPLLGRLSDRYGRRPVLLVSL--ACLGADWLVHA 92
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A2H0PHM6_9DELT (MFS domain-containing protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PHM6_9DELT) HSP 1 Score: 49.3 bits (116), Expect = 6.880e-5 Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 1
Query: 13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
+P LP S G+ G V Y +M FL +P+LGR+SD +GR +L +S +G+ LG A W I R +
Sbjct: 33 LPLLPIYGRSFGVSEAQMGLVLGAYSLMQFLFAPLLGRLSDKIGRRPVLCISILGTALGHFVLALAGSFWLLILGRVI 110
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A4R4QYV0_9ACTN (MFS transporter n=1 Tax=Micromonospora sp. KC213 TaxID=2530378 RepID=A0A4R4QYV0_9ACTN) HSP 1 Score: 48.9 bits (115), Expect = 9.400e-5 Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 13 IPSLPAVFESHGMDLR----WQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHAT--GKWSFIA 234
+P +PA+ + D W G + SVYG++ F++SPMLGR+SD GR +L VS + LG HA G W+ +A
Sbjct: 25 VPIMPALMAAVTKDAAAAVFWSGLLGSVYGLLQFVVSPMLGRLSDRYGRRPVLLVSL--TCLGVDWLAHAVSPGPWTLLA 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20669.5913.1 >prot_H-elongata_contig20669.5913.1 ID=prot_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp MPPQIPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVback to top mRNA from alignment at H-elongata_contig20669:2162..2792- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20669.5913.1 ID=mRNA_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=631bp|location=Sequence derived from alignment at H-elongata_contig20669:2162..2792- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20669:2162..2792- >mRNA_H-elongata_contig20669.5913.1 ID=mRNA_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig20669:2162..2792- (Himanthalia elongata Himel1 dioecious)back to top |