mRNA_H-elongata_contig20669.5913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20669.5913.1
Unique NamemRNA_H-elongata_contig20669.5913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: D8LJ31_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ31_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 9.180e-34
Identity = 54/75 (72.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   22 LPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
            +PA FESHGMDLRWQGWV+S YG++SF + PMLGRVSDS+GRV MLK+S VG+++GALGSL+ATG+W+FIA+R V
Sbjct:    1 MPAAFESHGMDLRWQGWVASTYGLISFFVGPMLGRVSDSMGRVAMLKMSCVGNIIGALGSLYATGRWTFIASRKV 75          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.010e-33
Identity = 58/79 (73.42%), Postives = 73/79 (92.41%), Query Frame = 1
Query:   10 QIPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
            QIPS+PA FESHGMDLRWQGWV+S YG++SF + PMLGRVSDS+GRV MLK+S VG+M+GALGSL+ATG+W+FIA+R++
Sbjct:   81 QIPSMPAAFESHGMDLRWQGWVASTYGIISFFVGPMLGRVSDSMGRVAMLKMSCVGNMIGALGSLYATGRWTFIASRTL 159          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A835Z3Q7_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.170e-17
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAAR 240
            +PS   +F S+GMDL  QG+V S   + +F+MSP+LGR SDS GRV +LK+SA GS+LGA G+L A  KW+FI AR
Sbjct:   54 LPSFRDLFASYGMDLVQQGYVGSASALSAFVMSPILGRASDSYGRVTLLKLSAAGSILGAAGTLLAPNKWAFILAR 129          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A316FIT4_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=1 Tax=Actinoplanes xinjiangensis TaxID=512350 RepID=A0A316FIT4_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 2.690e-5
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   13 IPSLPAVFESHGMD----LRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIA 234
            +P +PA+  +   D    + W G + S YGV+ F++SP+LGR+SD  GR  +L  S +   +  L    A+G W+ +A
Sbjct:   19 VPIMPALMTAVTADPATAVLWSGVLGSTYGVLQFVVSPLLGRISDRYGRRPVLLASLICLGVDWLAHASASGPWALLA 96          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A2T0K2N5_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=1 Tax=Actinoplanes italicus TaxID=113567 RepID=A0A2T0K2N5_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 5.020e-5
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   13 IPSLPAVFESHGMD----LRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFI 231
            +P LPA+  +   D    + W G + S YG++ F++SP+LGRVSD  GR  +L VS     +  L    A+G W+ +
Sbjct:   19 VPILPALMTAVTTDPAAAVLWSGVLGSTYGLLQFVLSPLLGRVSDRYGRRPVLLVSLTCLGVDWLAHAAASGPWTLL 95          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: W7TQ05_9STRA (Major facilitator superfamily mfs_1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ05_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 5.070e-5
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSM 183
            +P+ P + ++ G+ L+ +G + S++ ++ FL SP+LGR SD +GR  ML+VSAV S+
Sbjct:   30 LPAYPDLTKALGISLQTRGLMVSLFSLLQFLSSPILGRGSDVLGRSFMLRVSAVASL 86          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A7W5ASF0_9ACTN (DHA1 family tetracycline resistance protein-like MFS transporter n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A7W5ASF0_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 6.860e-5
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 IPSLPAVFESHGMDLR----WQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHA 210
            +P LPA+  +   D+     W G + SVYG++ F++SP+LGR+SD  GR  +L VS   + LGA   +HA
Sbjct:   25 VPILPALMTAVAADVTAAAFWSGLLGSVYGLLQFVLSPLLGRLSDRYGRRPVLLVSL--ACLGADWLVHA 92          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A2H0PHM6_9DELT (MFS domain-containing protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PHM6_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 6.880e-5
Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 1
Query:   13 IPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHATGKWSFIAARSV 246
            +P LP    S G+     G V   Y +M FL +P+LGR+SD +GR  +L +S +G+ LG      A   W  I  R +
Sbjct:   33 LPLLPIYGRSFGVSEAQMGLVLGAYSLMQFLFAPLLGRLSDKIGRRPVLCISILGTALGHFVLALAGSFWLLILGRVI 110          
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Match: A0A4R4QYV0_9ACTN (MFS transporter n=1 Tax=Micromonospora sp. KC213 TaxID=2530378 RepID=A0A4R4QYV0_9ACTN)

HSP 1 Score: 48.9 bits (115), Expect = 9.400e-5
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   13 IPSLPAVFESHGMDLR----WQGWVSSVYGVMSFLMSPMLGRVSDSVGRVNMLKVSAVGSMLGALGSLHAT--GKWSFIA 234
            +P +PA+  +   D      W G + SVYG++ F++SPMLGR+SD  GR  +L VS   + LG     HA   G W+ +A
Sbjct:   25 VPIMPALMAAVTKDAAAAVFWSGLLGSVYGLLQFVVSPMLGRLSDRYGRRPVLLVSL--TCLGVDWLAHAVSPGPWTLLA 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20669.5913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LJ31_ECTSI9.180e-3472.00MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC31_9PHAE6.010e-3373.42MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z3Q7_9STRA2.170e-1756.58Major facilitator superfamily domain-containing pr... [more]
A0A316FIT4_9ACTN2.690e-534.62DHA1 family tetracycline resistance protein-like M... [more]
A0A2T0K2N5_9ACTN5.020e-536.36DHA1 family tetracycline resistance protein-like M... [more]
W7TQ05_9STRA5.070e-542.11Major facilitator superfamily mfs_1 n=1 Tax=Nannoc... [more]
A0A7W5ASF0_9ACTN6.860e-541.43DHA1 family tetracycline resistance protein-like M... [more]
A0A2H0PHM6_9DELT6.880e-535.90MFS domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A4R4QYV0_9ACTN9.400e-538.75MFS transporter n=1 Tax=Micromonospora sp. KC213 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20669contigH-elongata_contig20669:2162..2792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-02_004530.1
Exons2
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.533664-CDS-H-elongata_contig20669:2161..22931622930155.533664-CDS-H-elongata_contig20669:2161..2293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20669 2162..2293 -
1691679302.329576-CDS-H-elongata_contig20669:2161..22931691679302.329576-CDS-H-elongata_contig20669:2161..2293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20669 2162..2293 -
1622930155.5502584-CDS-H-elongata_contig20669:2678..27921622930155.5502584-CDS-H-elongata_contig20669:2678..2792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20669 2679..2792 -
1691679302.3418212-CDS-H-elongata_contig20669:2678..27921691679302.3418212-CDS-H-elongata_contig20669:2678..2792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20669 2679..2792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20669.5913.1prot_H-elongata_contig20669.5913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20669 2162..2792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20669.5913.1

>prot_H-elongata_contig20669.5913.1 ID=prot_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MPPQIPSLPAVFESHGMDLRWQGWVSSVYGVMSFLMSPMLGRVSDSVGRV
NMLKVSAVGSMLGALGSLHATGKWSFIAARSV
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mRNA from alignment at H-elongata_contig20669:2162..2792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20669.5913.1 ID=mRNA_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=631bp|location=Sequence derived from alignment at H-elongata_contig20669:2162..2792- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCACAGATCCCTTCTCTGCCCGCGGTGTTCGAGAGCCACGGGAT GGATCTCCGCTGGCAAGGGTGGGTTTCGTCGGTGTACGGCGTTATGAGTT TCTTGATGTCTCCGGTGAGGCTGAAGAGGCAGTACAAGATTCACTCCCTA GAGTGGTCGCGTCATACAAACTCGAGCAGACGTCGATTTCTTTTGCCGTC CTCCTGACGAACAAGCCAGCCCTTCCTTTCCCCTCCCCACCTAATATATT CACTGTGCTGTGCTGTGCTGTGGTATCCAGCCTGACCGCGCAGTCGTATA TTGTTCGATGGCTCCTCTAGCATCTGGCCGCTTTTATGACCTGCGGTTTC GAGCTGTTAGATCTTAACCCTGCGTTGAAAAAAAATATACACTATTTTTT TCCTCCGTCCTGTCCGCCTCGACACATCAGAAAAAGACGCGCGTGGTGCG ACGATCCGCCTTCCCCCCACCCGCCGTCTTGCCCCACGTGCGTCCGCAGA TGCTCGGGCGGGTGAGTGATTCCGTGGGCAGGGTGAATATGCTCAAGGTG TCTGCCGTGGGATCGATGCTCGGCGCGCTGGGATCCCTTCACGCCACCGG CAAGTGGTCGTTTATCGCCGCGAGGTCAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig20669:2162..2792-

>mRNA_H-elongata_contig20669.5913.1 ID=mRNA_H-elongata_contig20669.5913.1|Name=mRNA_H-elongata_contig20669.5913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig20669:2162..2792- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCACAGATCCCTTCTCTGCCCGCGGTGTTCGAGAGCCACGGGAT
GGATCTCCGCTGGCAAGGGTGGGTTTCGTCGGTGTACGGCGTTATGAGTT
TCTTGATGTCTCCGATGCCTCCACAGATCCCTTCTCTGCCCGCGGTGTTC
GAGAGCCACGGGATGGATCTCCGCTGGCAAGGGTGGGTTTCGTCGGTGTA
CGGCGTTATGAGTTTCTTGATGTCTCCGATGCTCGGGCGGGTGAGTGATT
CCGTGGGCAGGGTGAATATGCTCAAGGTGTCTGCCGTGGGATCGATGCTC
GGCGCGCTGGGATCCCTTCACGCCACCGGCAAGTGGTCGTTTATCGCCGC
GAGGTCAGTTATGCTCGGGCGGGTGAGTGATTCCGTGGGCAGGGTGAATA
TGCTCAAGGTGTCTGCCGTGGGATCGATGCTCGGCGCGCTGGGATCCCTT
CACGCCACCGGCAAGTGGTCGTTTATCGCCGCGAGGTCAGTT
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