mRNA_H-elongata_contig206527.5907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206527.5907.1
Unique NamemRNA_H-elongata_contig206527.5907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.610e-25
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            YL+F+DLKKAY TVPQEAL AKL FYGVRG  L FIR LY+ S+I VR G+ +++   L RGVRQGCPLSPVLF
Sbjct:  648 YLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLF 721          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A196SDD1_BLAHN (Retroelement n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDD1_BLAHN)

HSP 1 Score: 86.3 bits (212), Expect = 5.250e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            Y  FID +KAY TVP +AL+ KL  YG+ GR   FI TLYS S +QVR+    +    L RG+RQGCPLSP+LF
Sbjct:   25 YACFIDFQKAYDTVPHQALLHKLRAYGITGRVYHFIETLYSHSMMQVRINGVYSREFPLQRGLRQGCPLSPILF 98          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A196SE83_BLAHN (Retroelement n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SE83_BLAHN)

HSP 1 Score: 86.3 bits (212), Expect = 5.290e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            Y  FID +KAY TVP +AL+ KL  YG+ GR   FI TLYS S +QVR+    +    L RG+RQGCPLSP+LF
Sbjct:  593 YACFIDFQKAYDTVPHQALLHKLRAYGITGRVYHFIETLYSHSMMQVRINGVYSREFPLQRGLRQGCPLSPILF 666          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A074REN7_9AGAM (Reverse transcriptase (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074REN7_9AGAM)

HSP 1 Score: 80.5 bits (197), Expect = 3.120e-16
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            + +F+D KKA+  V  EAL   LD  GVRG+AL FIR LY+ ++I+VR G  +++   +LRG RQGCP+SP+LF
Sbjct:  165 FAVFVDFKKAFDKVHHEALYRILDHIGVRGKALEFIRALYTNAKIRVRSGGKLSDSFGMLRGNRQGCPMSPLLF 238          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 7.740e-16
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   13 FIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGET---VTEPADLLRGVRQGCPLSPVLF 225
            FIDL+KAY T+P E L +KL+  G+ G  L F++ LY  S +QV+ GE    +++P  + RG+RQGCP SP+LF
Sbjct:  546 FIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILF 619          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 80.1 bits (196), Expect = 7.790e-16
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTE---PADLLRGVRQGCPLSPVLF 225
            YL FIDLKKAY TVP  AL  KL+  GVRG+ L FI+ LY  S +  R          PA L RG+RQGCP+SP+LF
Sbjct:  842 YLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLF 918          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.960e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVG--ETVTEP-ADLLRGVRQGCPLSPVLF 225
            + LLFID+KKAY +VP  AL  KL   GVRG  L F++ LY+ S+++VR G    +  P A L RG+RQGCPLSP LF
Sbjct:   23 IVLLFIDVKKAYDSVPHGALFFKLAKAGVRGPILAFVKALYAGSKMRVRTGYDPAILSPVAHLRRGLRQGCPLSPTLF 100          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A1R1X6G4_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X6G4_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 3.590e-14
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVL 222
            +L +ID  KAY  VP  AL+ KL   G+ G+ L  I+ +Y   +I VRVG  V+  A+ L GVRQGCP SP+L
Sbjct:   26 WLCYIDYSKAYDRVPHMALLHKLRSVGIGGKLLNMIKGMYDAPKIAVRVGNGVSNLAEYLCGVRQGCPASPIL 98          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A3Q3T275_9TELE (Reverse transcriptase domain-containing protein n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3T275_9TELE)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            V++ F+DL+KA+  VP++ L   L  YGVRG  LG IR+LY  SR  VR+  + ++   +  G+RQGCPLSPVLF
Sbjct:  304 VHMCFVDLEKAFDRVPRDILWEVLQEYGVRGSLLGAIRSLYKWSRSLVRIAGSKSDLFPVHVGLRQGCPLSPVLF 378          
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A2N5VC78_9BASI (Reverse transcriptase domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VC78_9BASI)

HSP 1 Score: 73.6 bits (179), Expect = 1.550e-13
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
            Y+LFID KKA+ +VP +AL  KL   GV    + F+   Y  SR Q+RVGE++++   +  G ++GCPLSP+LF
Sbjct:  606 YVLFIDFKKAFPSVPHQALWKKLRHCGVPENIINFLDNSYKNSRFQIRVGESLSDEYKMEVGTKEGCPLSPLLF 679          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE3.610e-2568.92Reverse transcriptase domain-containing protein n=... [more]
A0A196SDD1_BLAHN5.250e-1855.41Retroelement n=1 Tax=Blastocystis sp. subtype 1 (s... [more]
A0A196SE83_BLAHN5.290e-1855.41Retroelement n=2 Tax=Blastocystis sp. subtype 1 (s... [more]
A0A074REN7_9AGAM3.120e-1651.35Reverse transcriptase (Fragment) n=1 Tax=Rhizocton... [more]
A0A7S1SJ55_9CHLO7.740e-1648.65Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A3M2C3P5_9GAMM7.790e-1654.55Reverse transcriptase domain-containing protein n=... [more]
A0A2R5FKX6_9STRA4.960e-1553.85Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A1R1X6G4_9FUNG3.590e-1447.95LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A3Q3T275_9TELE1.370e-1349.33Reverse transcriptase domain-containing protein n=... [more]
A0A2N5VC78_9BASI1.550e-1345.95Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206527contigH-elongata_contig206527:656..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog5297.GMQ_19178T0
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.0710785-CDS-H-elongata_contig206527:655..8801622930155.0710785-CDS-H-elongata_contig206527:655..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206527 656..880 +
1691679302.1595957-CDS-H-elongata_contig206527:655..8801691679302.1595957-CDS-H-elongata_contig206527:655..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206527 656..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206527.5907.1prot_H-elongata_contig206527.5907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206527 656..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206527.5907.1

>prot_H-elongata_contig206527.5907.1 ID=prot_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRV
GETVTEPADLLRGVRQGCPLSPVLF
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mRNA from alignment at H-elongata_contig206527:656..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206527.5907.1 ID=mRNA_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig206527:656..880+ (Himanthalia elongata Himel1 dioecious)
GTGTATCTACTGTTCATCGACCTCAAGAAGGCATACCACACGGTGCCGCA GGAAGCCCTCATGGCGAAACTAGATTTCTACGGGGTGAGGGGACGCGCGC TCGGATTTATCAGAACTCTGTACTCCCGAAGTCGTATCCAGGTACGAGTA GGTGAGACCGTGACGGAACCAGCCGACCTCCTGCGGGGGGTTCGACAAGG GTGTCCCCTGTCGCCTGTTCTGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig206527:656..880+

>mRNA_H-elongata_contig206527.5907.1 ID=mRNA_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig206527:656..880+ (Himanthalia elongata Himel1 dioecious)
GTGTATCTACTGTTCATCGACCTCAAGAAGGCATACCACACGGTGCCGCA
GGAAGCCCTCATGGCGAAACTAGATTTCTACGGGGTGAGGGGACGCGCGC
TCGGATTTATCAGAACTCTGTACTCCCGAAGTCGTATCCAGGTACGAGTA
GGTGAGACCGTGACGGAACCAGCCGACCTCCTGCGGGGGGTTCGACAAGG
GTGTCCCCTGTCGCCTGTTCTGTTCGTGTATCTACTGTTCATCGACCTCA
AGAAGGCATACCACACGGTGCCGCAGGAAGCCCTCATGGCGAAACTAGAT
TTCTACGGGGTGAGGGGACGCGCGCTCGGATTTATCAGAACTCTGTACTC
CCGAAGTCGTATCCAGGTACGAGTAGGTGAGACCGTGACGGAACCAGCCG
ACCTCCTGCGGGGGGTTCGACAAGGGTGTCCCCTGTCGCCTGTTCTGTTC
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