mRNA_H-elongata_contig206527.5907.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.610e-25 Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
YL+F+DLKKAY TVPQEAL AKL FYGVRG L FIR LY+ S+I VR G+ +++ L RGVRQGCPLSPVLF
Sbjct: 648 YLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLF 721
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A196SDD1_BLAHN (Retroelement n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDD1_BLAHN) HSP 1 Score: 86.3 bits (212), Expect = 5.250e-18 Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
Y FID +KAY TVP +AL+ KL YG+ GR FI TLYS S +QVR+ + L RG+RQGCPLSP+LF
Sbjct: 25 YACFIDFQKAYDTVPHQALLHKLRAYGITGRVYHFIETLYSHSMMQVRINGVYSREFPLQRGLRQGCPLSPILF 98
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A196SE83_BLAHN (Retroelement n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SE83_BLAHN) HSP 1 Score: 86.3 bits (212), Expect = 5.290e-18 Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
Y FID +KAY TVP +AL+ KL YG+ GR FI TLYS S +QVR+ + L RG+RQGCPLSP+LF
Sbjct: 593 YACFIDFQKAYDTVPHQALLHKLRAYGITGRVYHFIETLYSHSMMQVRINGVYSREFPLQRGLRQGCPLSPILF 666
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A074REN7_9AGAM (Reverse transcriptase (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074REN7_9AGAM) HSP 1 Score: 80.5 bits (197), Expect = 3.120e-16 Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
+ +F+D KKA+ V EAL LD GVRG+AL FIR LY+ ++I+VR G +++ +LRG RQGCP+SP+LF
Sbjct: 165 FAVFVDFKKAFDKVHHEALYRILDHIGVRGKALEFIRALYTNAKIRVRSGGKLSDSFGMLRGNRQGCPMSPLLF 238
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO) HSP 1 Score: 80.1 bits (196), Expect = 7.740e-16 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 13 FIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGET---VTEPADLLRGVRQGCPLSPVLF 225
FIDL+KAY T+P E L +KL+ G+ G L F++ LY S +QV+ GE +++P + RG+RQGCP SP+LF
Sbjct: 546 FIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILF 619
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM) HSP 1 Score: 80.1 bits (196), Expect = 7.790e-16 Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTE---PADLLRGVRQGCPLSPVLF 225
YL FIDLKKAY TVP AL KL+ GVRG+ L FI+ LY S + R PA L RG+RQGCP+SP+LF
Sbjct: 842 YLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLF 918
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.960e-15 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVG--ETVTEP-ADLLRGVRQGCPLSPVLF 225
+ LLFID+KKAY +VP AL KL GVRG L F++ LY+ S+++VR G + P A L RG+RQGCPLSP LF
Sbjct: 23 IVLLFIDVKKAYDSVPHGALFFKLAKAGVRGPILAFVKALYAGSKMRVRTGYDPAILSPVAHLRRGLRQGCPLSPTLF 100
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A1R1X6G4_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X6G4_9FUNG) HSP 1 Score: 70.5 bits (171), Expect = 3.590e-14 Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVL 222
+L +ID KAY VP AL+ KL G+ G+ L I+ +Y +I VRVG V+ A+ L GVRQGCP SP+L
Sbjct: 26 WLCYIDYSKAYDRVPHMALLHKLRSVGIGGKLLNMIKGMYDAPKIAVRVGNGVSNLAEYLCGVRQGCPASPIL 98
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A3Q3T275_9TELE (Reverse transcriptase domain-containing protein n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3T275_9TELE) HSP 1 Score: 73.6 bits (179), Expect = 1.370e-13 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
V++ F+DL+KA+ VP++ L L YGVRG LG IR+LY SR VR+ + ++ + G+RQGCPLSPVLF
Sbjct: 304 VHMCFVDLEKAFDRVPRDILWEVLQEYGVRGSLLGAIRSLYKWSRSLVRIAGSKSDLFPVHVGLRQGCPLSPVLF 378
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Match: A0A2N5VC78_9BASI (Reverse transcriptase domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VC78_9BASI) HSP 1 Score: 73.6 bits (179), Expect = 1.550e-13 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 4 YLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVGETVTEPADLLRGVRQGCPLSPVLF 225
Y+LFID KKA+ +VP +AL KL GV + F+ Y SR Q+RVGE++++ + G ++GCPLSP+LF
Sbjct: 606 YVLFIDFKKAFPSVPHQALWKKLRHCGVPENIINFLDNSYKNSRFQIRVGESLSDEYKMEVGTKEGCPLSPLLF 679 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206527.5907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig206527.5907.1 >prot_H-elongata_contig206527.5907.1 ID=prot_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp VYLLFIDLKKAYHTVPQEALMAKLDFYGVRGRALGFIRTLYSRSRIQVRVback to top mRNA from alignment at H-elongata_contig206527:656..880+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig206527.5907.1 ID=mRNA_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig206527:656..880+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig206527:656..880+ >mRNA_H-elongata_contig206527.5907.1 ID=mRNA_H-elongata_contig206527.5907.1|Name=mRNA_H-elongata_contig206527.5907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig206527:656..880+ (Himanthalia elongata Himel1 dioecious)back to top |